LOCUS       NZ_CP125200             3511 bp    DNA     circular CON 05-APR-2024
DEFINITION  Klebsiella pneumoniae strain 59 plasmid unnamed7, complete sequence.
ACCESSION   NZ_CP125200
VERSION     NZ_CP125200.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33790391
            Assembly: GCF_037477815.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3511)
  AUTHORS   Konanov,D.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAR-2023) Laboratory of Mathematical Biology and
            Bioinformatics, Research Institute for Systems Biology and Medicine,
            Nauchniy Proezd, Moscow 117246, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 61x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037477815.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 19:35:36
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,798
            CDSs (total)                      :: 5,672
            Genes (coding)                    :: 5,526
            CDSs (with protein)               :: 5,526
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 146
            CDSs (without protein)            :: 146
            Pseudo Genes (ambiguous residues) :: 0 of 146
            Pseudo Genes (frameshifted)       :: 53 of 146
            Pseudo Genes (incomplete)         :: 92 of 146
            Pseudo Genes (internal stop)      :: 23 of 146
            Pseudo Genes (multiple problems)  :: 19 of 146
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP125200.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3511
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="59"
                     /db_xref="taxon:573"
                     /plasmid="unnamed7"
                     /geo_loc_name="Russia"
                     /collection_date="2022"
     gene            complement(740..922)
                     /locus_tag="P4G15_RS28970"
                     /old_locus_tag="P4G15_28940"
     CDS             complement(740..922)
                     /locus_tag="P4G15_RS28970"
                     /old_locus_tag="P4G15_28940"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016265984.1"
                     /translation="MLTFIGVVVVAVIAFKLFMLFFSSSESAVERATRKYMENPTSANY
                     KIMVATRMRNEKKRG"
                     /name="hypothetical protein"
     gene            complement(1317..1532)
                     /locus_tag="P4G15_RS28975"
                     /old_locus_tag="P4G15_28945"
     CDS             complement(1317..1532)
                     /locus_tag="P4G15_RS28975"
                     /old_locus_tag="P4G15_28945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015328239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_015328239.1"
                     /translation="MTELEKQLLSALEQLQQDYSRRLDEWESAFEEWRKMSGLMQRENA
                     ALSERVSGLSRQVQSLSEQLRRLSTG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1539..2036)
                     /locus_tag="P4G15_RS28980"
                     /old_locus_tag="P4G15_28950"
     CDS             complement(1539..2036)
                     /locus_tag="P4G15_RS28980"
                     /old_locus_tag="P4G15_28950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_015328238.1"
                     /translation="MSSLLTASRDFEEKSKAQQQLTEERLKAAFSKHENVVKSELNASA
                     KRINDAISAHEQGMNAAMQSNRLSVLRMVGRTWLTITMVSGLLFASLSGVLWYQGNRIA
                     ANLAEIRQQRDTLSKLHMQTWGVTYLENRNGRFLVLPEGMKAETGRTVDNKTRNAVKLV
                     RE"
                     /name="MbeB family mobilization protein"
     gene            complement(<2077..2775)
                     /locus_tag="P4G15_RS28985"
                     /pseudo=""
     CDS             complement(<2077..2775)
                     /locus_tag="P4G15_RS28985"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2714..3055)
                     /locus_tag="P4G15_RS28990"
                     /old_locus_tag="P4G15_28960"
     CDS             complement(2714..3055)
                     /locus_tag="P4G15_RS28990"
                     /old_locus_tag="P4G15_28960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_071599364.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPTR
                     AGRLPSISPALLRQLAGMGNNLNQIARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGPDDDC"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          complement(3141..3314)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          2..497
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.047"
                     /coverage="97.0"
                     /evalue="4.79e-148"
     Typing          3281..3511
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.397"
                     /coverage="99.0"
                     /evalue="8.61e-96"
     Typing          complement(1202..2724)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          complement(2721..3034)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.453"
                     /coverage="99.0"
                     /evalue="9.860000000000001e-59"
ORIGIN
        1 aggactataa agataccagg cgtttccccc tggcggctcc ctcgtgcgct ctcctgttcc
       61 tgcctttcgg tttaccggtg tcattccgct gttatggccg cgtttatctc attccacgcc
      121 tgacactcag ttccgggtag gcagttcgct ccaagctgga ctgtatgcac aaaccccccg
      181 ttcagtccga ctgctgcgcc ttacccggta actatcatct tgagtccaac ccgagaaagc
      241 acgacaaagc gccactggca gcagccactg gtaactggga tatacgagag agagattcag
      301 aggtcttgaa gtatgggcct gactgcggct acactgaaag aacagttttg gtatctgcgg
      361 tctcgtatac ccagttacct ggttaagcag ttccccaaca gacttaacct tcgatcaaac
      421 cacctcccca ggtggttttt tcgttttcag agcaagagat tacgactgaa acgacaggat
      481 cacaagaaga tcattaactc cgagagtagt aactcccacc atgtttgcct atcaacacac
      541 ttaggaaaca ttacttgcgt ttagttatac gacttctagc tctccataac agatcctcat
      601 tttctgctga tggatttcga cggtatcgtt cctccgcttt ccgtactcca tattcaggaa
      661 acaccctgac agcaaccatt tgtataaaga cataacacac caaaagtaaa aataaaaaac
      721 caataaactc aaacatatat caccctcttt tcttctcatt tctcatgcgt gtagccacca
      781 ttattttata gttagcactc gtagggttct ccatatattt acgggtagca cgttcgacgg
      841 cagattcgga tgaactaaaa aaaagcataa ataatttaaa tgcaataacg gcgactacca
      901 ctacaccaat aaatgtaagc atcactctta ctcctgttat caacattaaa cataacatct
      961 cttacccgca ccgcgccgga ggcactcagg gcgtttctga tggctgacgg gcaaaaggtg
     1021 gtggcaagta caccgaaaac caccagaaac gcacctgatt tattttacgc atatgcatca
     1081 cttattcaca tcactgcata gccggtgatt tcggttaaaa aagactctct gtgtgctgaa
     1141 atcgcagaaa atggccatga tccccgtcac gctcaggcca cctgagacgg gcgtttatca
     1201 gtctccatac tccctgtcac catgagataa tgtgcgttgc cgttccggta ccagatctgc
     1261 tgtcttctct ggttcctttt ccgttgtttg cccgtatcgc tgttgctcaa tctcattcag
     1321 cctgtcgata accggcgcag ctgctcgctc aaactctgca cctgcctgct caagcccgac
     1381 acgcgctcgc tcagcgccgc gttctcccgt tgcataagac cagacatctt ccgccattcc
     1441 tcgaaggcgc tctcccactc gtccagcctt ctcgagtagt cctgctgtag ctgctctaac
     1501 gcgctcagca attgtttttc cagttccgtc attctgctct actcccgtac cagcttcacc
     1561 gcgttccgcg tcttgttgtc caccgtccgg cccgtttcgg ctttcatccc ctccggcagc
     1621 accagaaacc gtccgttgcg gttctccaga taggtcacgc cccacgtctg catgtgcagt
     1681 ttcgacagcg tatctctctg ctgcctgatt tccgccaggt tcgccgctat ccggttcccc
     1741 tggtaccaca gcaccccgct caggctggcg aacagcagcc ctgacaccat ggtgatggtc
     1801 agccacgtcc gcccgaccat tcgcagcacg ctcagccggt tcgactgcat cgccgcgttc
     1861 atcccctgtt cgtgggcgct gatggcgtcg ttgattctct tcgcgcttgc gttcagttcc
     1921 gatttgacaa cgttctcgtg cttgctgaat gcggctttca gcctctcttc ggtaagctgc
     1981 tgctgtgctt tcgatttctc ctcgaagtcc ctcgaggccg ttaaaagact gctcataaat
     2041 ggctcccctc agtcggatat ttcgcccccc gtccgggtcg gcaatgctga tactgttttt
     2101 tgtggttctg accacctcaa aaccggccgc tgtgagcgcc cctgtgacgt catcacgcgt
     2161 tttcagctct cctgatgagg ctaacatcag caaaccccgt gtaatcgtct ctgcggcttc
     2221 ctgcttcgtt tctggcagtc ctgaaggcgt gaccagcgcc cgccggttct ccgggtcgtt
     2281 cggatcatgt agccccagcc tgccgttgac cactgtctgc cacgcatcga tgcgcggccg
     2341 gtcggcacga tcgtaatacg gctggaggcg tttccccgtc agtaattcgg tattggggat
     2401 cagaaaattc agctcaagac gacccttgtc tgcgtgttcc acccacagaa tgctgtactg
     2461 gtctttatcg agtccgggca tcagaacccg ctcaaagctg gccatcagtt tttcacgctg
     2521 acccggcggc aggtccgcct ccgcgaatga cagcaccccg gaggtatatt ttttcacata
     2581 cggcgacgca tcaatcagct cccggacttc ttccggcttc ccctgcagga cgctggcacc
     2641 ttcacgctgc cggtctttac ccagaagata atccacagga ccggcgcccc cgccgcgacc
     2701 ccggggatgg aatttaacaa tcatcgtccg gccctttttc cagtacggca tgccgcaacc
     2761 gttccagacc ggcatcgatc gccatcagcg ctgccacgat ctgcacccgg tcatgaccgg
     2821 caccaccggc gttcactttc cgggcgatct ggttcaggtt attgcccatg ccggcaagct
     2881 gacgcagcag cgcgggcgaa atcgagggaa gcctgccggc gcgtgtcggt ttctcatcaa
     2941 ggcaggtctg gcgcatccac gccgccagtt gttttccgtc gcaccgctca agcaaccgcc
     3001 ggtgttcgtc ttccgtcacc cacatcgtga gcatcttgtt gcgtttatct gccagaatcg
     3061 cctcctgata acgccgtgac ggacgggaaa gcctttcccg gtcggcgcgg ggttggacaa
     3121 gccgcaggcg cgtcagtggg gtttcggggc gcagccctga accagtcacg tagcgctagc
     3181 ggagtgtata ctggcttact atgttggcac ggatgaggat gtcagtgaag tgcttcatgt
     3241 ggcaggagaa aaaaggcggc accggcgcgt cagcagaata tgtgatacag gatatattcc
     3301 gcttcctcgc tcactgactc gctacgctcg gtcgttcgac tgcggcgagc ggaaatggct
     3361 tacgaacggg gcggagattt cctggaagat gccaggaaga tacttaacag ggaagcgata
     3421 gggccgcggc gaagccgttt ttccataggc tccgcccccc tgacaagcat cacgaaatct
     3481 gacgctcaaa tcagtggtgg cgaaacccga c
//
