LOCUS       NZ_CP125199             4052 bp    DNA     circular CON 05-APR-2024
DEFINITION  Klebsiella pneumoniae strain 59 plasmid unnamed6, complete sequence.
ACCESSION   NZ_CP125199
VERSION     NZ_CP125199.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33790391
            Assembly: GCF_037477815.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4052)
  AUTHORS   Konanov,D.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAR-2023) Laboratory of Mathematical Biology and
            Bioinformatics, Research Institute for Systems Biology and Medicine,
            Nauchniy Proezd, Moscow 117246, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 61x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037477815.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 19:35:36
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,798
            CDSs (total)                      :: 5,672
            Genes (coding)                    :: 5,526
            CDSs (with protein)               :: 5,526
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 146
            CDSs (without protein)            :: 146
            Pseudo Genes (ambiguous residues) :: 0 of 146
            Pseudo Genes (frameshifted)       :: 53 of 146
            Pseudo Genes (incomplete)         :: 92 of 146
            Pseudo Genes (internal stop)      :: 23 of 146
            Pseudo Genes (multiple problems)  :: 19 of 146
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP125199.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4052
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="59"
                     /db_xref="taxon:573"
                     /plasmid="unnamed6"
                     /geo_loc_name="Russia"
                     /collection_date="2022"
     gene            811..1269
                     /locus_tag="P4G15_RS28945"
                     /old_locus_tag="P4G15_28915"
     CDS             811..1269
                     /locus_tag="P4G15_RS28945"
                     /old_locus_tag="P4G15_28915"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016245712.1"
                     /translation="MIETTLLAVLTGALSNLTSDAIKGIIGKLASKHPEVEQQASLLET
                     PLPFDEVDKLFSQMQGAIQAAAANGEIQLDGAELKALSGIKFDHQAGTVLINGSQVQAS
                     ILVTGGGQHATGKTIIQGDTTMTSQGTSIKMSGGAQIVMTGGARIIQN"
                     /name="hypothetical protein"
     gene            complement(1777..1989)
                     /locus_tag="P4G15_RS28950"
                     /old_locus_tag="P4G15_28920"
     CDS             complement(1777..1989)
                     /locus_tag="P4G15_RS28950"
                     /old_locus_tag="P4G15_28920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137423.1"
                     /translation="MTELEKQLLTALEQLHQDYSQRLDEWESAFAEWQKMSGLMQRENA
                     ALNERVTRLSQQVANLSRQLQRLSQ"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1993..2478)
                     /locus_tag="P4G15_RS28955"
                     /old_locus_tag="P4G15_28925"
     CDS             complement(1993..2478)
                     /locus_tag="P4G15_RS28955"
                     /old_locus_tag="P4G15_28925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001749519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_180160425.1"
                     /translation="MSSLLALAKDLEQQSKAQQQSTGEMLKAAFSEHEKSVKAELSASA
                     KRISDAISAHEQGMTAAMQSNRLSVLRMVGRTWLTITLVSVLLIAMSGSILWWQGQQIT
                     GNYQTIRAQERTQAMLSEKNHGVQLSLCGEKKLSCVKVNAKAGAYGEEGNWMVLERK"
                     /name="MbeB family mobilization protein"
     gene            complement(<2516..3193)
                     /locus_tag="P4G15_RS28960"
                     /pseudo=""
     CDS             complement(<2516..3193)
                     /locus_tag="P4G15_RS28960"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(3156..3497)
                     /locus_tag="P4G15_RS28965"
                     /old_locus_tag="P4G15_28935"
     CDS             complement(3156..3497)
                     /locus_tag="P4G15_RS28965"
                     /old_locus_tag="P4G15_28935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_057172823.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGRQLAAWMRQSCLDEKPAR
                     ACRLPSISPALLRQLAGMGNNLNQIARKVNAVGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGGDDDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          complement(3585..3764)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.407"
                     /coverage="83.0"
                     /evalue="1.57e-69"
     Typing          2..393
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="81.971"
                     /coverage="99.0"
                     /evalue="8.73e-86"
     Typing          complement(1662..3166)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="94.024"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gcgtttgtct cattccacgc ctgacactca gttccgggta ggcagttcgc tccaagctgg
       61 actgtatgca cgatcccccc gttcagtccg actaccacgc tcttttcggt aactatcgtc
      121 ttgagtccaa cccgaaaagg cacgacaaat cgccattggc agtagccact ggtaaacagg
      181 atgtgcgaga gatgtattca gagttcttga agtggtggcc ttactgcggc tacactggaa
      241 ggacagcttt ggtgacatgt ctcgcacaag actgttacca cggttagtaa atctgccagg
      301 attaactaac cttcgaaaaa ccacctgcca gggtggtttt ttcgtttaca gagcaaaaga
      361 ctacgctcag aaagagatta tctcaagaag atcatctctt tctcttactc aagtcaaagc
      421 aaaaaaacac cactccatca caaactcagg ttatagtcgg tatgcaacta ataacactgt
      481 aatttctgtg caaaatcgag gttatgcata tgcaaatcaa catcaactgc aagagtatcc
      541 caacatcttt cgatgttgtc tgctcgaatt gtgaatggac cggcgtggct acattagatt
      601 atccggaaaa cgtaaaaacc ctatctgtcg gaggagaaat aaatttcact cataatgacg
      661 agacgccaaa atgtccacaa tgtagcgttg gatatatata tggtaaaagt ggcacttata
      721 aacgtaatag tgcaactaac catatggaca gaatcggaga ttataaagag taaataatac
      781 gcatcacagc aatctaacga gggaaatata atgattgaaa ccacactact tgccgttctc
      841 actggcgcat taagcaatct tacttctgat gcaatcaaag gcatcatagg gaagttagca
      901 agtaaacatc ctgaagttga acaacaagcc tcactgcttg aaacaccatt accttttgac
      961 gaagttgata aattattttc tcagatgcag ggggccattc aggctgcagc agccaatggt
     1021 gaaattcagc tagatggagc tgaattaaaa gcattgagcg gaataaaatt tgatcaccaa
     1081 gccggaactg ttttgataaa tggatctcaa gtacaagcgt caattttagt cactggtgga
     1141 ggtcaacatg ctactggaaa aacgatcata caaggtgata cgacaatgac tagccagggt
     1201 acaagtataa aaatgtcagg tggtgctcaa atagtaatga ctggtggagc ccgaatcatt
     1261 cagaactaat atgatttacc ataacatctc ttgcccgcac cgctccggac atgttcgtca
     1321 caaacggggc ggcagtcagg taaaaccggc aacaaaccac ccgatacacc gccccgttcg
     1381 tgacagataa attttacccg gctgcatggt catgcagcca gatgcatacg gtctgatttc
     1441 aggccagaat ctggatgaac gccttaaaaa caggaaaatg cttctccagc cagtcccaga
     1501 tctccagcgc catgtacagg cagttcagca ccgtctcaat cacgttaaac agtctcataa
     1561 tccctccgtt gtatacgccg tgatgttttc atcacgaccg tatttagcgg gaaatttatg
     1621 agcccttctt cgtggggttt gtcactggtg aagcctgtca gcccagcgtc ggaccgttat
     1681 agctccgctg acgggaacgg gcttccgcca gctctttttc gtgctgtcgc tgctcgtatg
     1741 cccgttcggc ggccaccgcc atttcatgcc gctgcactac tggctcaaac gctgtaactg
     1801 cctgctcaag ttcgccacct gctgactcaa gcgcgtgacg cgctcgttca gcgccgcgtt
     1861 ctcccgttgc ataagaccag acatcttctg ccattccgcg aaggcgctct cccactcgtc
     1921 cagcctttgc gagtagtcct gatgtagctg ctctaatgcg gtcagcaact gtttttccag
     1981 ttccgtcatg ggctatttcc tctccagtac catccagttc ccttcctccc cgtaagctcc
     2041 cgctttcgcg ttcactttga cgcaggacag tttcttctcc ccgcagagcg acagctgaac
     2101 gccgtggttt ttctccgaca acatggcctg cgtccgctcc tgcgcccgga tagtctggta
     2161 attcccggtg atctgctgcc cctgccacca cagaatgctc ccgctcatgg cgatcagcag
     2221 taccgagacc agggtgatgg tcagccacgt ccggccgacc atacgcagca cgctcaggcg
     2281 gttcgactgc atcgccgcgg tcataccctg ctcgtgggcg ctgatggcgt cgctgattct
     2341 cttcgcgctt gcgctcagtt ccgcttttac agatttctcg tgctcgctga atgcggcttt
     2401 cagcatctcg ccggtactct gctgctgcgc tttcgattgc tgctccaagt ccttcgccag
     2461 cgctaaaaga ctgctcataa atggctccct tcagtcggat gtttcgcccc ccgtccgggt
     2521 cggcaatgct gatactgttt tttgtagtgc ggaccacctc aaaacctgcc gctgtgagcg
     2581 cacctgtgac gtcctcgcga gttttgagct ccccggatga ggctaaggcc agcaacccac
     2641 gtgtaatcgc ctgagcggct tccagcttcg tttccggcag tgcggacggc gtaaccagta
     2701 accgccggtt ctccggggcg tttggatcat gcagtcccag tctgccgttc accacggtct
     2761 gccaggcatc gatgcgcggc cggtcggcgc gatcgtaata cggctgcagg cgtttcccgg
     2821 tcagcagttc agtgttgggg atcaggaaat tcagctccag ccgccccttg tcggtgtgct
     2881 ccacccacag aatgctgtac tggtctttat cgagcccggg catcagaacc cgctcaaagc
     2941 tggccatgat ctgctcccgc tgcccgggca gcagttcagc ctccgcgaac gacagcacgc
     3001 cggaggtgta ctttttcgca tacggcgagg catcgataag ctcccggact tcctccggtt
     3061 ttccctgcag cacggtcgcc ccctcgcgct gccggtcttt tcccagcagg taatccaccg
     3121 gaccggcacc accaccgcgc ccccggggat gaaatttaac gatcatcatc cccccctttt
     3181 tccagcaccg catgccgcag ccgctccagt cccgcgtcta ttgccatcag ggcggccaca
     3241 atctgcaccc gatcatgacc ggcaccaacg gcattcactt tccgggcgat ctggttcagg
     3301 ttgttaccca taccggcaag ctggcgcagc agcgccggcg atattgacgg cagtctgcag
     3361 gcacgcgccg gcttctcatc gaggcaggac tgacgcatcc acgccgccag ctgcctgccg
     3421 tcgcaccgct cgagcagccg ccggtgttcg tcttccgtca cccacatcgt gagcatcttg
     3481 ttgcgtttgt ctgccagagt agcctcctga taacaccggg acgggcggga aatgtttccc
     3541 ggtcggcacg gtgttggaca agccgcaggc gcgtcagtgg cttttagcgg gtttcggggc
     3601 gcagccctga accagtcacg tagcgctagc ggagtgtata ctggctaaat atgttacggc
     3661 ggagtggtaa tgtatgaaag tgcttcatgt gggaagggga aaatgtggct gacgggcgta
     3721 agtgcaacat gctggtaaag gtgaaatgac gcctcctcgc tcactcagtc gctgcgctcc
     3781 tgccgtgaga ctgcggcggg cgttaccagc tcacagatga cgggatacgc aagcagcgct
     3841 caaatcagga gaagccggga agaggatgcg gcgttgccgt ttttccatag gctccgcccc
     3901 cctgacgagt atcataaaat ctgacgctca aatcagtggt ggcgaaaccc gacaggacta
     3961 taaagatccc aggcgtttcc ccctggtagc tccctcgtgc gctctcctgt tcctgccatt
     4021 cggtttaccg gtgtcattcc gctgttatgg cc
//
