LOCUS       NZ_CP125189             3511 bp    DNA     circular CON 09-APR-2024
DEFINITION  Klebsiella pneumoniae strain 70 plasmid unnamed2, complete sequence.
ACCESSION   NZ_CP125189
VERSION     NZ_CP125189.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33790392
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3511)
  AUTHORS   Konanov,D.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-APR-2023) Laboratory of mathematical biology and
            bioinformatics, Research Institute for Systems Biology and Medicine,
            Nauchniy proezd, Moscow 117246, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 183x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038010555.1-RS_2024_04_08
            Annotation Date                   :: 04/08/2024 16:08:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5
            CDSs (total)                      :: 5
            Genes (coding)                    :: 4
            CDSs (with protein)               :: 4
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP125189.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3511
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="70"
                     /db_xref="taxon:573"
                     /plasmid="unnamed2"
                     /geo_loc_name="Russia"
                     /collection_date="2022"
     gene            join(3486..3511,1..181)
                     /locus_tag="P4G29_RS00005"
                     /old_locus_tag="P4G29_28800"
     CDS             join(3486..3511,1..181)
                     /locus_tag="P4G29_RS00005"
                     /old_locus_tag="P4G29_28800"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_064408406.1"
                     /translation="MLITGVRVMLTFIGVVVVAVIAFKLFMLFFSSSESAVERATRKYM
                     ENPTSANYKIMVATRMRNEKKRG"
                     /name="hypothetical protein"
     gene            1377..1718
                     /locus_tag="P4G29_RS00010"
                     /old_locus_tag="P4G29_28805"
     CDS             1377..1718
                     /locus_tag="P4G29_RS00010"
                     /old_locus_tag="P4G29_28805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_071599364.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPTR
                     AGRLPSISPALLRQLAGMGNNLNQIARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGPDDDC"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1927..>2355
                     /locus_tag="P4G29_RS00015"
                     /old_locus_tag="P4G29_28810"
                     /pseudo=""
     CDS             1927..>2355
                     /locus_tag="P4G29_RS00015"
                     /old_locus_tag="P4G29_28810"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            2396..2893
                     /locus_tag="P4G29_RS00020"
                     /old_locus_tag="P4G29_28815"
     CDS             2396..2893
                     /locus_tag="P4G29_RS00020"
                     /old_locus_tag="P4G29_28815"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_015328238.1"
                     /translation="MSSLLTASRDFEEKSKAQQQLTEERLKAAFSKHENVVKSELNASA
                     KRINDAISAHEQGMNAAMQSNRLSVLRMVGRTWLTITMVSGLLFASLSGVLWYQGNRIA
                     ANLAEIRQQRDTLSKLHMQTWGVTYLENRNGRFLVLPEGMKAETGRTVDNKTRNAVKLV
                     RE"
                     /name="MbeB family mobilization protein"
     gene            2900..3115
                     /locus_tag="P4G29_RS00025"
                     /old_locus_tag="P4G29_28820"
     CDS             2900..3115
                     /locus_tag="P4G29_RS00025"
                     /old_locus_tag="P4G29_28820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015328239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_015328239.1"
                     /translation="MTELEKQLLSALEQLQQDYSRRLDEWESAFEEWRKMSGLMQRENA
                     ALSERVSGLSRQVQSLSEQLRRLSTG"
                     /name="MbeD family mobilization/exclusion protein"
     Typing          1119..1292
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          complement(631..1152)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.69"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          1709..3231
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gcttacattt attggtgtag tggtagtcgc cgttattgca tttaaattat ttatgctttt
       61 ttttagttca tccgaatctg ccgtcgaacg tgctacccgt aaatatatgg agaaccctac
      121 gagtgctaac tataaaataa tggtggctac acgcatgaga aatgagaaga aaagagggtg
      181 atatatgttt gagtttattg gttttttatt tttacttttg gtgtgttatg tctttataca
      241 aatggttgct gtcagggtgt ttcctgaata tggagtacgg aaagcggagg aacgataccg
      301 tcgaaatcca tcagcagaaa atgaggatct gttatggaga gctagaagtc gtataactaa
      361 acgcaagtaa tgtttcctaa gtgtgttgat aggcaaacat ggtgggagtt actactctcg
      421 gagttaatga tcttcttgtg atcctgtcgt ttcagtcgta atctcttgct ctgaaaacga
      481 aaaaaccacc tggggaggtg gtttgatcga aggttaagtc agttggggaa ctgcttaacc
      541 aggtaactgg gtatacgaga ccgcagatac caaaactgtt ctttcagtgt agccgcagtc
      601 aggcccatac ttcaagacct ctgaatctct ctctcgtata tcccagttac cagtggctgc
      661 tgccagtggc gctttgtcgt gctttctcgg gttggactca agatgatagt taccgggtaa
      721 ggcgcagcag tcggactgaa cggggggttt gtgcatacag tccagcttgg agcgaactgc
      781 ctacccggaa ctgagtgtca ggcgtggaat gagataaacg cggccataac agcggaatga
      841 caccggtaaa ccgaaaggca ggaacaggag agcgcacgag ggagccgcca gggggaaacg
      901 cctggtatct ttatagtcct gtcgggtttc gccaccactg atttgagcgt cagatttcgt
      961 gatgcttgtc aggggggcgg agcctatgga aaaacggctt cgccgcggcc ctatcgcttc
     1021 cctgttaagt atcttcctgg catcttccag gaaatctccg ccccgttcgt aagccatttc
     1081 cgctcgccgc agtcgaacga ccgagcgtag cgagtcagtg agcgaggaag cggaatatat
     1141 cctgtatcac atattctgct gacgcgccgg tgccgccttt tttctcctgc cacatgaagc
     1201 acttcactga catcctcatc cgtgccaaca tagtaagcca gtatacactc cgctagcgct
     1261 acgtgactgg ttcagggctg cgccccgaaa ccccactgac gcgcctgcgg cttgtccaac
     1321 cccgcgccga ccgggaaagg ctttcccgtc cgtcacggcg ttatcaggag gcgattctgg
     1381 cagataaacg caacaagatg ctcacgatgt gggtgacgga agacgaacac cggcggttgc
     1441 ttgagcggtg cgacggaaaa caactggcgg cgtggatgcg ccagacctgc cttgatgaga
     1501 aaccgacacg cgccggcagg cttccctcga tttcgcccgc gctgctgcgt cagcttgccg
     1561 gcatgggcaa taacctgaac cagatcgccc ggaaagtgaa cgccggtggt gccggtcatg
     1621 accgggtgca gatcgtggca gcgctgatgg cgatcgatgc cggtctggaa cggttgcggc
     1681 atgccgtact ggaaaaaggg ccggacgatg attgttaaat tccatccccg gggtcgcggc
     1741 gggggcgccg gtcctgtgga ttatcttctg ggtaaagacc ggcagcgtga aggtgccagc
     1801 gtcctgcagg ggaagccgga agaagtccgg gagctgattg atgcgtcgcc gtatgtgaaa
     1861 aaatatacct ccggggtgct gtcattcgcg gaggcggacc tgccgccggg tcagcgtgaa
     1921 aaactgatgg ccagctttga gcgggttctg atgcccggac tcgataaaga ccagtacagc
     1981 attctgtggg tggaacacgc agacaagggt cgtcttgagc tgaattttct gatccccaat
     2041 accgaattac tgacggggaa acgcctccag ccgtattacg atcgtgccga ccggccgcgc
     2101 atcgatgcgt ggcagacagt ggtcaacggc aggctggggc tacatgatcc gaacgacccg
     2161 gagaaccggc gggcgctggt cacgccttca ggactgccag aaacgaagca ggaagccgca
     2221 gagacgatta cacggggttt gctgatgtta gcctcatcag gagagctgaa aacgcgtgat
     2281 gacgtcacag gggcgctcac agcggccggt tttgaggtgg tcagaaccac aaaaaacagt
     2341 atcagcattg ccgacccgga cggggggcga aatatccgac tgaggggagc catttatgag
     2401 cagtctttta acggcctcga gggacttcga ggagaaatcg aaagcacagc agcagcttac
     2461 cgaagagagg ctgaaagccg cattcagcaa gcacgagaac gttgtcaaat cggaactgaa
     2521 cgcaagcgcg aagagaatca acgacgccat cagcgcccac gaacagggga tgaacgcggc
     2581 gatgcagtcg aaccggctga gcgtgctgcg aatggtcggg cggacgtggc tgaccatcac
     2641 catggtgtca gggctgctgt tcgccagcct gagcggggtg ctgtggtacc aggggaaccg
     2701 gatagcggcg aacctggcgg aaatcaggca gcagagagat acgctgtcga aactgcacat
     2761 gcagacgtgg ggcgtgacct atctggagaa ccgcaacgga cggtttctgg tgctgccgga
     2821 ggggatgaaa gccgaaacgg gccggacggt ggacaacaag acgcggaacg cggtgaagct
     2881 ggtacgggag tagagcagaa tgacggaact ggaaaaacaa ttgctgagcg cgttagagca
     2941 gctacagcag gactactcga gaaggctgga cgagtgggag agcgccttcg aggaatggcg
     3001 gaagatgtct ggtcttatgc aacgggagaa cgcggcgctg agcgagcgcg tgtcgggctt
     3061 gagcaggcag gtgcagagtt tgagcgagca gctgcgccgg ttatcgacag gctgaatgag
     3121 attgagcaac agcgatacgg gcaaacaacg gaaaaggaac cagagaagac agcagatctg
     3181 gtaccggaac ggcaacgcac attatctcat ggtgacaggg agtatggaga ctgataaacg
     3241 cccgtctcag gtggcctgag cgtgacgggg atcatggcca ttttctgcga tttcagcaca
     3301 cagagagtct tttttaaccg aaatcaccgg ctatgcagtg atgtgaataa gtgatgcata
     3361 tgcgtaaaat aaatcaggtg cgtttctggt ggttttcggt gtacttgcca ccaccttttg
     3421 cccgtcagcc atcagaaacg ccctgagtgc ctccggcgcg gtgcgggtaa gagatgttat
     3481 gtttaatgtt gataacagga gtaagagtga t
//
