LOCUS       NZ_CP125174             2056 bp    DNA     circular CON 05-APR-2024
DEFINITION  Klebsiella pneumoniae strain 161 plasmid unnamed8, complete
            sequence.
ACCESSION   NZ_CP125174
VERSION     NZ_CP125174.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33790395
            Assembly: GCF_037477785.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Konanov,D.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAR-2023) Laboratory of Mathematical Biology and
            Bioinformatics, Research Institute for Systems Biology and Medicine,
            Nauchniy Proezd, Moscow 117246, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 103x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037477785.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 19:33:28
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,463
            CDSs (total)                      :: 5,343
            Genes (coding)                    :: 5,169
            CDSs (with protein)               :: 5,169
            Genes (RNA)                       :: 120
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 174
            CDSs (without protein)            :: 174
            Pseudo Genes (ambiguous residues) :: 0 of 174
            Pseudo Genes (frameshifted)       :: 73 of 174
            Pseudo Genes (incomplete)         :: 104 of 174
            Pseudo Genes (internal stop)      :: 32 of 174
            Pseudo Genes (multiple problems)  :: 33 of 174
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP125174.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="161"
                     /db_xref="taxon:573"
                     /plasmid="unnamed8"
                     /geo_loc_name="Russia"
                     /collection_date="2022"
     gene            join(1352..2056,1..285)
                     /locus_tag="P4G16_RS27310"
                     /old_locus_tag="P4G16_27305"
     CDS             join(1352..2056,1..285)
                     /locus_tag="P4G16_RS27310"
                     /old_locus_tag="P4G16_27305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_023569045.1"
                     /translation="MKNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIGELGDTLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVKHARWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESE"
                     /name="protein rep"
     gene            838..1029
                     /locus_tag="P4G16_RS27315"
                     /old_locus_tag="P4G16_27310"
     CDS             838..1029
                     /locus_tag="P4G16_RS27315"
                     /old_locus_tag="P4G16_27310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_020324555.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     Typing          complement(14..203)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.906"
                     /coverage="99.0"
                     /evalue="1.72e-88"
ORIGIN
        1 gcggtggccg agaccctgaa atattccacg aagccggccg acatggtcgc cgatcctgaa
       61 tggttcctcg aactgacccg ccagacgcac aagcgccgct ttgtggcgac cggcggcgca
      121 ctcaaagacg tattgaaact cgatcaggaa accgacgccg acatggtgat cggggatgat
      181 atttccgagg gcgacgatga cggttcacgc atcgcgttcg agtggaaaac cgaggtcaga
      241 aaataccgtc gctcaccaac gaaagataaa accgaatcag agtaacgggg tgtcggggct
      301 gcgccctgac catgaggact ttgggcatcc gtcaccttgg tggcggtgta ccaaagtcac
      361 atcttgtccg attgatttta ctccgatgca ggatagggct gccgccgcaa agtgacgtca
      421 ctcgattgct gagttcggat tccgaacctg ggttttcctt ccggtaattt tccggaaggc
      481 gcgcttagta gtttctcccc ttcggtgaga aactgcgcgg tggggcaagc ccacgaaaaa
      541 caaaaactga caccggacaa gatgtgtttt tggagtaccg ccatcacgat gtcggtacca
      601 aaaacgatcc gtcagggctg cgccccgaca ccctgccaac acctcacgcc gccagattaa
      661 aatctgtcag cgttcgccgt tcccgaaatc gtcaaacgct aaatcgcggg gtcccgctgg
      721 cttgccagtg ggttccgatt tagtgattga cgacagcacc cgtagaatac ttacaggggg
      781 tggttgtgat cacgcagtga gcgcaaccac ctgataggcg tttttgaggg ggtaggtatg
      841 atcgtcagac tggataaccg gctgtttgag attctcgatg agatgggtgc gcatgtggat
      901 cgggaaatgt tcatggcggc ctatgcacag cggaaggccg aaaaggaaaa tgatccccgg
      961 catatccgtc agcggaaatt gaccaggttg gctcatgatt tgatgtcaga atcggaccct
     1021 gaattgtgag cctcgcgtgc gcgcgaggga aattggtcag aaaatcgccg gattttcatg
     1081 cgcgcgatcc ttgtatttat acttaaggga taactctggc gttaaaaata agcctcagcc
     1141 cttgtgcctc aagggtttca gcgtgatttg cctgaaaatg actttgaagt tattctgtcg
     1201 ggagtggtcg cgttaaaagc gacccccgca acgacggcca tcgttcgggg gtgtgaccac
     1261 ctgtaggaat tctattttgc gacagacaac acaggtgata cggcaatgat aacacgtcaa
     1321 atgagccatc gcccagtatg ggacggtgcg catgaaaaac cctgaactcc agaacctcac
     1381 ggactattcc ccctcagatg cgccctggga cgctcacaga agcgtttctg acgacgtggg
     1441 agggatttac ctgcttgcgg ccgaatatga gcgctacggg gcgcgtatgg cctcctgcgg
     1501 cggtttactg cgtttcgggt ggtctaccct caaagaaacc ggagaaacgc gcctgaggct
     1561 gcgtgaggcg catttctgcc gtgtccggca ctgtcctgtc tgccagtgga ggcgctccct
     1621 gatgtggcaa gcccgtttct accagtccct gccgcgtatc gtggcggatt accccgattc
     1681 ccgctggatg ttcctgaccc tgaccgtgcg caactgtgcg atcggggagc tgggcgatac
     1741 gctgagccgg atgaacacgg ctttccagcg gctgaaggat cgcaaagagt tcagaccagt
     1801 tcagggatgg atccgcacca cggaagtcac ccgcggcagt gacggcagcg cacacccgca
     1861 cttccacaca ctgatgatgg ttccgcctgg catgcttaac gggaagagtt acgtcaaaca
     1921 tgcgcgctgg gttgagctgt ggcgggagtg ccttcgggtc agctacgatc cgaatgtcga
     1981 tgtccgggca gtgaaacccc ggaagccgaa ggacggcgaa tcgctggcct gcgcgaccgc
     2041 cgaactggtg cgcggc
//
