LOCUS       NZ_CP125173             4167 bp    DNA     circular CON 05-APR-2024
DEFINITION  Klebsiella pneumoniae strain 161 plasmid unnamed7, complete
            sequence.
ACCESSION   NZ_CP125173
VERSION     NZ_CP125173.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33790395
            Assembly: GCF_037477785.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4167)
  AUTHORS   Konanov,D.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAR-2023) Laboratory of Mathematical Biology and
            Bioinformatics, Research Institute for Systems Biology and Medicine,
            Nauchniy Proezd, Moscow 117246, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 103x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037477785.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 19:33:28
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,463
            CDSs (total)                      :: 5,343
            Genes (coding)                    :: 5,169
            CDSs (with protein)               :: 5,169
            Genes (RNA)                       :: 120
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 174
            CDSs (without protein)            :: 174
            Pseudo Genes (ambiguous residues) :: 0 of 174
            Pseudo Genes (frameshifted)       :: 73 of 174
            Pseudo Genes (incomplete)         :: 104 of 174
            Pseudo Genes (internal stop)      :: 32 of 174
            Pseudo Genes (multiple problems)  :: 33 of 174
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP125173.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4167
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="161"
                     /db_xref="taxon:573"
                     /plasmid="unnamed7"
                     /geo_loc_name="Russia"
                     /collection_date="2022"
     gene            complement(join(3672..4167,1..620))
                     /locus_tag="P4G16_RS27280"
                     /old_locus_tag="P4G16_27275"
     CDS             complement(join(3672..4167,1..620))
                     /locus_tag="P4G16_RS27280"
                     /old_locus_tag="P4G16_27275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405083.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0016887 - ATP hydrolysis activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="WP_012579087.1"
                     /translation="MIKEISLKNFKCFNELYLKQLKTLNIIAGKNNYGKTSILDAIFCF
                     YDVKNPAVLLNIQAFRKEMAEINKNKPFWVSYFHDMDTSQKMSIVIRDERSEVTQTYET
                     ETNQRLESSLSLNVDTVLSNQNIPRQTIGSQATVNSLKINVTETPNAKNRVSNKLFSMQ
                     LKEDGVEIKSEIKNERDGINYKFKTATIITTSRKINKEATITNVSSLLTQKRKKDILEN
                     LKKIDDRIVDIAISAIGNNKEIYLDIGFSELNEISMLGEGISRALSFISSVLVQENSII
                     LIDEIENGIHYSVIKDIIKSLISSAKQNNNQIFATTHSQDVIRAINEIDSKNEDIAYIR
                     LGREKNSLKPTAVQFNMDDFSYSVENDWEVR"
                     /name="ATP-binding protein"
     gene            complement(965..1078)
                     /locus_tag="P4G16_RS27285"
                     /old_locus_tag="P4G16_27280"
                     /pseudo=""
     CDS             complement(965..1078)
                     /locus_tag="P4G16_RS27285"
                     /old_locus_tag="P4G16_27280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            1494..1685
                     /locus_tag="P4G16_RS27290"
                     /old_locus_tag="P4G16_27285"
     CDS             1494..1685
                     /locus_tag="P4G16_RS27290"
                     /old_locus_tag="P4G16_27285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1685..2086
                     /locus_tag="P4G16_RS27295"
                     /old_locus_tag="P4G16_27290"
     CDS             1685..2086
                     /locus_tag="P4G16_RS27295"
                     /old_locus_tag="P4G16_27290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_012579088.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSGQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(2432..2674)
                     /locus_tag="P4G16_RS27300"
                     /old_locus_tag="P4G16_27295"
     CDS             complement(2432..2674)
                     /locus_tag="P4G16_RS27300"
                     /old_locus_tag="P4G16_27295"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_098963735.1"
                     /translation="MHSAEIHTIQPGEVLFPAFFSSENGERGRNLLRGREALPAQPENR
                     FSAPSGIGFVDGRQSRYGKSPDDSPHDSPAIRIVN"
                     /name="hypothetical protein"
     gene            complement(3040..3672)
                     /locus_tag="P4G16_RS27305"
                     /old_locus_tag="P4G16_27300"
     CDS             complement(3040..3672)
                     /locus_tag="P4G16_RS27305"
                     /old_locus_tag="P4G16_27300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000804504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3226 domain-containing protein"
                     /protein_id="WP_012579086.1"
                     /translation="MKDINNSKKIIFVEGDDDFHFLCNLLEIQGITDVFVEKINGKSKL
                     KQALRAFKNIDSFDEKESIFIILDADTSFSDTERSIIATLRELQISSPSSHNEIAMNGN
                     TKISFFIMPGKDKQGAIEDLIIEHASTRALYEYIIEFFEKIKNNKDDISASDKEYTYPT
                     NEKKAKVQVYLSCNRESDSRIGISMKNGIINTADNCFDEIKDFISKI"
                     /name="DUF3226 domain-containing protein"
     Typing          complement(966..1373)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.399"
                     /coverage="99.0"
                     /evalue="5.92e-171"
ORIGIN
        1 acatttgtaa ttgttgcctc tttgtttatc tttctggatg ttgttattat tgttgctgtc
       61 ttaaatttat aattaatccc atccctttcg ttttttattt cggattttat ttctacgcca
      121 tcttctttca attgcataga gaaaagctta ttggaaaccc tgtttttcgc attgggtgtc
      181 tcggtcacat ttatttttaa agagtttact gtggcctgag aaccgatagt ttgacgaggt
      241 atgttttggt tagatagtac ggtgtcaacg tttagagaca aacttgattc taatctctga
      301 tttgtttctg tttcatatgt ttgtgttact tcagagcgtt catctcgaat gactatggac
      361 atcttttgtg atgtgtccat atcatgaaag taactaaccc aaaatggctt gtttttgttt
      421 atttctgcca tttcttttct gaatgcttga atgtttaaca aaacagccgg gttttttaca
      481 tcataaaaac aaaaaatagc atccagtata gatgttttcc cgtagttgtt tttcccagct
      541 atgatattta aagtctttaa ttgctttaga tatagctcat tgaagcattt gaagttcttt
      601 aaacttattt cctttatcat gatagcctct gttcgtgttt ttgttatatg ccatacgatt
      661 tgttagtacc ttaataaaat gtacagcttt cattgtgatt agctagactt tatgtcaaag
      721 attaactttg attgcttgtg ttttaatcga ttttttttac tttcttcttg agattatctg
      781 gcagcagccg taagcttccg gctgtgaacg aaaaaaaccg ccttggcggg cggttttttc
      841 gaaaggttca gtagagttgg cgctctatga accgaggtaa ctggcttaaa gggagcgcag
      901 tcaccaaaac tgttcgttta gtttagcttt aactggcgta taacttcaag actaactccc
      961 taaatcagtt accagtggct gctgccagtg gcgctttgtc gtgtctttcc gggttggact
     1021 caagacgata gttaccggat taggcgcagc agtcggactg aacggggggt tcgtgcatac
     1081 agtccagctt ggagcgaact gcctacccgg aactgagtgt caggcgtgga atgagacaaa
     1141 cgcggccata acagcggaat gacaccggta aaccgaaagg caggaacagg agagcgcacg
     1201 agggagccat cagggggaaa cgcctggtat ctttatagtc ctgtcgggtt tcgccaccac
     1261 tgatttgagc gtcagattcc gtgatgctcg tcaggggggc ggagcctatg gaaaaacggc
     1321 cgctgtgcgg cctttccttc tttcctccat gcgattactc ggttttctcg agcgtttcta
     1381 cgcatgctcc tgccgctcgc cgcagccgaa cggcaggagc gtagcgactg agtgagcgag
     1441 gaagcggaaa agaggagatc cctacactga ccactgacgc tctgaggcct cttatgacga
     1501 aacaacagaa aacagcgctg aacatggcta aattcatcca gaatcagtct ctgctcctgc
     1561 tggagaagct taacgagctt gatctcgatg tcgaggccga cctttgtgag aaactccacg
     1621 atgatgcgga gcatcttttc cgtacactgt cctcgagact ggatgcatta caggatggta
     1681 actgatggcc agagtgtcta ttagtgaggc tgcccgactg acgggtaaga gtagaacaac
     1741 actgcacagg ttaattaaag caggtgacct gtccacctgt agcggtgagc gcaatgcaaa
     1801 aatggtagat acttcagagc ttttacgtgt ctttggcccc tttgagcaac cgaagggtga
     1861 acaccattct ggacaggtct ctggacagcg tgatacagcc tctgctgacc agagtgaaca
     1921 ggtgatccgt catctgaaac aggagattga acacctgaac accttacttt tgtccaagga
     1981 ttcgcacatt gacagcctga aacaggccat gctccttctt gaaaatcacc aggcaaaatt
     2041 aactgaatcc ccggcgccat ggtggaaatt ctggaaaaaa tcctgacccc gtcatgcttc
     2101 agttttcctc tccggccatc ccagggagtt cctgaacctt cccaaaaatc gtcagatctc
     2161 tgaacgctcc tcaccactaa aaatacccac accccacgca aaattaaaat tttgcagatt
     2221 ccttatttac aacaatgggt taatgaaaaa taaatgtgcg gtgatgtgtt acaaagtgca
     2281 gatccaagtc gtggacgact ctatggcgaa tcgctgacga attgcccacg attcatatgt
     2341 gaatcacgct ttattatcat attgttatga tgaatcgact cttgattcaa ttcatcactt
     2401 tgggtgtttt ttgctcatgg tgactcttga ttcaattcac gattcgaatc gccggtgaat
     2461 cgtgtggtga gtcgtccggc gacttgccat aacgtgattg ccggccgtcg acgaacccga
     2521 ttcctgaagg tgctgaaaac cggttttccg gctgcgccgg caacgcttca cggccacgca
     2581 ataaattgcg tccccgttca ccgttttcgg aggagaagaa cgccggaaac aggacttccc
     2641 ctggctgaat ggtgtgaatt tccgcgctat gcacttgcgc gcatactcat gcatgccgta
     2701 aaaacagagc ctgcgcgttt ctggcgggtt ttcgggtggt ttgttgcctg ttttaccggt
     2761 ttcccgtcag aaacgtcctg agtccgtttt agcggtgcgt acaattatga ttttatgtta
     2821 aattgtttta agtgaataga gagaatataa cttaagggag catcttgtgc tgggtctttt
     2881 acattagatc tgcacaatca ttgttttggc atctggtgat gtctttagga cgtttgagat
     2941 tgctgataac taaagtgtat gatgctttct atacgttatc cggcgtttaa taacaccctg
     3001 gtgataagcc agcccgtgaa gggctggctt gatttggatt tatatttttg aaataaaatc
     3061 ttttatttca tcaaagcaat tgtctgctgt gtttattatt ccatttttca tggatattcc
     3121 tattcttgag tcggattctc tattgcagct aagatagact tgtaccttag cttttttttc
     3181 gtttgttgga taagtgtact ctttgtcact cgctgagatg tcatctttat tatttttaat
     3241 tttttcgaaa aattctatta tgtattcata taacgctcga gtgcttgcgt gttcaattat
     3301 cagatcttca atggcacctt gcttgtcttt tcctggcatt ataaagaaag aaatttttgt
     3361 attgccattc atagctatct cgttatgcga gctgggggag gagatttgta gttctcgcaa
     3421 tgtggcaatt attgatcttt ctgtgtcaga aaatgatgtg tcagcatcta atataataaa
     3481 aatactttct ttttcatcga aagaatcaat gtttttgaat gctctaagtg cttgttttaa
     3541 ttttgatttt ccatttattt tttcgacaaa aacatcggta atgccttgta tttcaagtag
     3601 gttgcataga aaatgaaaat catcatcacc ctcaacgaaa atgatctttt tgctattatt
     3661 tatgtctttc attatcttac ctcccagtcg ttctcaactg agtaggagaa atcatccata
     3721 ttgaattgta cggctgttgg ttttagggag ttcttttctc ttcctagtct aatataagcg
     3781 atatcttcat ttttgctatc tatttcgttt attgctcgta tcacatcttg actatgagtt
     3841 gttgcaaata tttgattgtt gttttgtttt gcagatgaaa ttaatgattt tattatgtct
     3901 ttaattactg agtaatgtat tccgttctcg atttcatcaa taagaataat tgagttttcc
     3961 tgtaccagca ctgagctgat aaaagataat gctcgactga taccctcgcc aagcattgat
     4021 atttcattta gctcactaaa tccaatgtct aaatatattt ccttattgtt acctatcgca
     4081 gatattgcta tatctacaat tctgtcatct atttttttta agttttctag tatgtctttt
     4141 ttcctttttt gtgttagtag gctagat
//
