LOCUS       NZ_CP125165             3511 bp    DNA     circular CON 05-APR-2024
DEFINITION  Klebsiella pneumoniae strain 165 plasmid unnamed6, complete
            sequence.
ACCESSION   NZ_CP125165
VERSION     NZ_CP125165.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33790396
            Assembly: GCF_037477855.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3511)
  AUTHORS   Konanov,D.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-APR-2023) Laboratory of mathematical biology and
            bioinformatics, Research Institute for Systems Biology and Medicine,
            Nauchniy proezd, Moscow 117246, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 54x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037477855.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 19:45:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,818
            CDSs (total)                      :: 5,695
            Genes (coding)                    :: 5,548
            CDSs (with protein)               :: 5,548
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 147
            CDSs (without protein)            :: 147
            Pseudo Genes (ambiguous residues) :: 0 of 147
            Pseudo Genes (frameshifted)       :: 56 of 147
            Pseudo Genes (incomplete)         :: 88 of 147
            Pseudo Genes (internal stop)      :: 28 of 147
            Pseudo Genes (multiple problems)  :: 22 of 147
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP125165.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3511
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="165"
                     /db_xref="taxon:573"
                     /plasmid="unnamed6"
                     /geo_loc_name="Russia"
                     /collection_date="2022"
     gene            join(3104..3511,1..90)
                     /locus_tag="P4G12_RS29070"
                     /old_locus_tag="P4G12_29050"
     CDS             join(3104..3511,1..90)
                     /locus_tag="P4G12_RS29070"
                     /old_locus_tag="P4G12_29050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_015328238.1"
                     /translation="MSSLLTASRDFEEKSKAQQQLTEERLKAAFSKHENVVKSELNASA
                     KRINDAISAHEQGMNAAMQSNRLSVLRMVGRTWLTITMVSGLLFASLSGVLWYQGNRIA
                     ANLAEIRQQRDTLSKLHMQTWGVTYLENRNGRFLVLPEGMKAETGRTVDNKTRNAVKLV
                     RE"
                     /name="MbeB family mobilization protein"
     gene            97..312
                     /locus_tag="P4G12_RS29075"
                     /old_locus_tag="P4G12_29055"
     CDS             97..312
                     /locus_tag="P4G12_RS29075"
                     /old_locus_tag="P4G12_29055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015328239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_015328239.1"
                     /translation="MTELEKQLLSALEQLQQDYSRRLDEWESAFEEWRKMSGLMQRENA
                     ALSERVSGLSRQVQSLSEQLRRLSTG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            707..889
                     /locus_tag="P4G12_RS29080"
                     /old_locus_tag="P4G12_29060"
     CDS             707..889
                     /locus_tag="P4G12_RS29080"
                     /old_locus_tag="P4G12_29060"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016265984.1"
                     /translation="MLTFIGVVVVAVIAFKLFMLFFSSSESAVERATRKYMENPTSANY
                     KIMVATRMRNEKKRG"
                     /name="hypothetical protein"
     gene            2085..2426
                     /locus_tag="P4G12_RS29085"
                     /old_locus_tag="P4G12_29065"
     CDS             2085..2426
                     /locus_tag="P4G12_RS29085"
                     /old_locus_tag="P4G12_29065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_071599364.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPTR
                     AGRLPSISPALLRQLAGMGNNLNQIARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGPDDDC"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2635..>3063
                     /locus_tag="P4G12_RS29090"
                     /old_locus_tag="P4G12_29070"
                     /pseudo=""
     CDS             2635..>3063
                     /locus_tag="P4G12_RS29090"
                     /old_locus_tag="P4G12_29070"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     Typing          1827..2000
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          complement(1339..1860)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.69"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          4..428
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="99.0"
                     /evalue="6.99e-80"
     Typing          2417..3510
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 tttctggtgc tgccggaggg gatgaaagcc gaaacgggcc ggacggtgga caacaagacg
       61 cggaacgcgg tgaagctggt acgggagtag agcagaatga cggaactgga aaaacaattg
      121 ctgagcgcgt tagagcagct acagcaggac tactcgagaa ggctggacga gtgggagagc
      181 gccttcgagg aatggcggaa gatgtctggt cttatgcaac gggagaacgc ggcgctgagc
      241 gagcgcgtgt cgggcttgag caggcaggtg cagagtttga gcgagcagct gcgccggtta
      301 tcgacaggct gaatgagatt gagcaacagc gatacgggca aacaacggaa aaggaaccag
      361 agaagacagc agatctggta ccggaacggc aacgcacatt atctcatggt gacagggagt
      421 atggagactg ataaacgccc gtctcaggtg gcctgagcgt gacggggatc atggccattt
      481 tctgcgattt cagcacacag agagtctttt ttaaccgaaa tcaccggcta tgcagtgatg
      541 tgaataagtg atgcatatgc gtaaaataaa tcaggtgcgt ttctggtggt tttcggtgta
      601 cttgccacca ccttttgccc gtcagccatc agaaacgccc tgagtgcctc cggcgcggtg
      661 cgggtaagag atgttatgtt taatgttgat aacaggagta agagtgatgc ttacatttat
      721 tggtgtagtg gtagtcgccg ttattgcatt taaattattt atgctttttt ttagttcatc
      781 cgaatctgcc gtcgaacgtg ctacccgtaa atatatggag aaccctacga gtgctaacta
      841 taaaataatg gtggctacac gcatgagaaa tgagaagaaa agagggtgat atatgtttga
      901 gtttattggt tttttatttt tacttttggt gtgttatgtc tttatacaaa tggttgctgt
      961 cagggtgttt cctgaatatg gagtacggaa agcggaggaa cgataccgtc gaaatccatc
     1021 agcagaaaat gaggatctgt tatggagagc tagaagtcgt ataactaaac gcaagtaatg
     1081 tttcctaagt gtgttgatag gcaaacatgg tgggagttac tactctcgga gttaatgatc
     1141 ttcttgtgat cctgtcgttt cagtcgtaat ctcttgctct gaaaacgaaa aaaccacctg
     1201 gggaggtggt ttgatcgaag gttaagtcag ttggggaact gcttaaccag gtaactgggt
     1261 atacgagacc gcagatacca aaactgttct ttcagtgtag ccgcagtcag gcccatactt
     1321 caagacctct gaatctctct ctcgtatatc ccagttacca gtggctgctg ccagtggcgc
     1381 tttgtcgtgc tttctcgggt tggactcaag atgatagtta ccgggtaagg cgcagcagtc
     1441 ggactgaacg gggggtttgt gcatacagtc cagcttggag cgaactgcct acccggaact
     1501 gagtgtcagg cgtggaatga gataaacgcg gccataacag cggaatgaca ccggtaaacc
     1561 gaaaggcagg aacaggagag cgcacgaggg agccgccagg gggaaacgcc tggtatcttt
     1621 atagtcctgt cgggtttcgc caccactgat ttgagcgtca gatttcgtga tgcttgtcag
     1681 gggggcggag cctatggaaa aacggcttcg ccgcggccct atcgcttccc tgttaagtat
     1741 cttcctggca tcttccagga aatctccgcc ccgttcgtaa gccatttccg ctcgccgcag
     1801 tcgaacgacc gagcgtagcg agtcagtgag cgaggaagcg gaatatatcc tgtatcacat
     1861 attctgctga cgcgccggtg ccgccttttt tctcctgcca catgaagcac ttcactgaca
     1921 tcctcatccg tgccaacata gtaagccagt atacactccg ctagcgctac gtgactggtt
     1981 cagggctgcg ccccgaaacc ccactgacgc gcctgcggct tgtccaaccc cgcgccgacc
     2041 gggaaaggct ttcccgtccg tcacggcgtt atcaggaggc gattctggca gataaacgca
     2101 acaagatgct cacgatgtgg gtgacggaag acgaacaccg gcggttgctt gagcggtgcg
     2161 acggaaaaca actggcggcg tggatgcgcc agacctgcct tgatgagaaa ccgacacgcg
     2221 ccggcaggct tccctcgatt tcgcccgcgc tgctgcgtca gcttgccggc atgggcaata
     2281 acctgaacca gatcgcccgg aaagtgaacg ccggtggtgc cggtcatgac cgggtgcaga
     2341 tcgtggcagc gctgatggcg atcgatgccg gtctggaacg gttgcggcat gccgtactgg
     2401 aaaaagggcc ggacgatgat tgttaaattc catccccggg gtcgcggcgg gggcgccggt
     2461 cctgtggatt atcttctggg taaagaccgg cagcgtgaag gtgccagcgt cctgcagggg
     2521 aagccggaag aagtccggga gctgattgat gcgtcgccgt atgtgaaaaa atatacctcc
     2581 ggggtgctgt cattcgcgga ggcggacctg ccgccgggtc agcgtgaaaa actgatggcc
     2641 agctttgagc gggttctgat gcccggactc gataaagacc agtacagcat tctgtgggtg
     2701 gaacacgcag acaagggtcg tcttgagctg aattttctga tccccaatac cgaattactg
     2761 acggggaaac gcctccagcc gtattacgat cgtgccgacc ggccgcgcat cgatgcgtgg
     2821 cagacagtgg tcaacggcag gctggggcta catgatccga acgacccgga gaaccggcgg
     2881 gcgctggtca cgccttcagg actgccagaa acgaagcagg aagccgcaga gacgattaca
     2941 cggggtttgc tgatgttagc ctcatcagga gagctgaaaa cgcgtgatga cgtcacaggg
     3001 gcgctcacag cggccggttt tgaggtggtc agaaccacaa aaaacagtat cagcattgcc
     3061 gacccggacg gggggcgaaa tatccgactg aggggagcca tttatgagca gtcttttaac
     3121 ggcctcgagg gacttcgagg agaaatcgaa agcacagcag cagcttaccg aagagaggct
     3181 gaaagccgca ttcagcaagc acgagaacgt tgtcaaatcg gaactgaacg caagcgcgaa
     3241 gagaatcaac gacgccatca gcgcccacga acaggggatg aacgcggcga tgcagtcgaa
     3301 ccggctgagc gtgctgcgaa tggtcgggcg gacgtggctg accatcacca tggtgtcagg
     3361 gctgctgttc gccagcctga gcggggtgct gtggtaccag gggaaccgga tagcggcgaa
     3421 cctggcggaa atcaggcagc agagagatac gctgtcgaaa ctgcacatgc agacgtgggg
     3481 cgtgacctat ctggagaacc gcaacggacg g
//
