LOCUS       NZ_CP125164             4431 bp    DNA     circular CON 05-APR-2024
DEFINITION  Klebsiella pneumoniae strain 165 plasmid unnamed5, complete
            sequence.
ACCESSION   NZ_CP125164
VERSION     NZ_CP125164.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33790396
            Assembly: GCF_037477855.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4431)
  AUTHORS   Konanov,D.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-APR-2023) Laboratory of mathematical biology and
            bioinformatics, Research Institute for Systems Biology and Medicine,
            Nauchniy proezd, Moscow 117246, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 54x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037477855.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 19:45:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,818
            CDSs (total)                      :: 5,695
            Genes (coding)                    :: 5,548
            CDSs (with protein)               :: 5,548
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 147
            CDSs (without protein)            :: 147
            Pseudo Genes (ambiguous residues) :: 0 of 147
            Pseudo Genes (frameshifted)       :: 56 of 147
            Pseudo Genes (incomplete)         :: 88 of 147
            Pseudo Genes (internal stop)      :: 28 of 147
            Pseudo Genes (multiple problems)  :: 22 of 147
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP125164.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4431
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="165"
                     /db_xref="taxon:573"
                     /plasmid="unnamed5"
                     /geo_loc_name="Russia"
                     /collection_date="2022"
     gene            complement(826..1236)
                     /locus_tag="P4G12_RS29050"
                     /old_locus_tag="P4G12_29030"
     CDS             complement(826..1236)
                     /locus_tag="P4G12_RS29050"
                     /old_locus_tag="P4G12_29030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_048295909.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKGIKVID
                     TSELIRVFGSLDGVIDDVKSDAESTGINSVGLHDLQHRIALLEAENDGLKGAVKARDEH
                     IDSLRQAMQLLEHKHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(1236..1427)
                     /locus_tag="P4G12_RS29055"
                     /old_locus_tag="P4G12_29035"
     CDS             complement(1236..1427)
                     /locus_tag="P4G12_RS29055"
                     /old_locus_tag="P4G12_29035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000166328.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDAEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1908..2057)
                     /locus_tag="P4G12_RS29060"
                     /old_locus_tag="P4G12_29040"
     CDS             complement(1908..2057)
                     /locus_tag="P4G12_RS29060"
                     /old_locus_tag="P4G12_29040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017880354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_017880354.1"
                     /translation="MPSEYDEQLDSTDTQLPGEYDLFDLMAQVTEENLHAPVDSGPPVG
                     REAL"
                     /name="hypothetical protein"
     gene            2964..3878
                     /locus_tag="P4G12_RS29065"
                     /old_locus_tag="P4G12_29045"
     CDS             2964..3878
                     /locus_tag="P4G12_RS29065"
                     /old_locus_tag="P4G12_29045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001448734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="WP_017880353.1"
                     /translation="MPNTVNYPQIIPFISKGKMDAIKNTFGNTLTDRECYGIYIWSQKA
                     SAAIYPLLQQLEVTLRNSIDKEATNVMGLNWWDGVYTDKTKPKWDDFIFNINKGRDRYK
                     KNYKKNNPSVLSSLIVVPHDDAIAHTDFYTWQAVLSDTFHTQNRKHVNKSLWPRLTYKV
                     LKGLDRKKTEKAARLDFINELNEIRNYRNRLSHNDCIWIKMNSNNLQSAVETVREKINK
                     IEDLIKTINPQIHSTLVKWGVFYHARRICSQREVEHHMGKNIVNCTNPTMSSILATIYS
                     WTDDGKLTSVVNDGKNDLAIHKF"
                     /name="Abi family protein"
     Typing          complement(2051..2265)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="83.105"
                     /coverage="100.0"
                     /evalue="7.539999999999999e-48"
     Typing          2213..2724
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.076"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 tttaaaacca aacattttag ctactcaaaa cggtaatttt aacgaagtcc tccccccccc
       61 cccctcaata caaacccgaa tattaagcta tttaccataa catcccttgc gtgcaccgcc
      121 tgagaggccc tcagggcgtt tctgacggga aaccggcaaa acagacaaca aaccacccga
      181 aaacccgcca gaaacgcgca ggctctgttt ttacggcatg catgagtatg cgcgcaagtg
      241 catagcgcgg aaattcacgc cattcagccg gggtaagtcc tgtttccggc gttcttctcc
      301 tccgaaaacg gtgaacgggg acgcaattta ttgcgtggcc gtgaagcgtt gccggcgcag
      361 ccggaaaacc ggttttcagc acgttcagga atcgggttcg tcgacggccg gcaatcacgt
      421 tatggcaagt cgccggacga ctcaccacac gattcaccgg cgattcgact cgtgacttga
      481 ctctagagtc accacggtca aaaaaacgcc aaatcgacga ttcggctcta gagtcaagtc
      541 gtcataagtt actgatagtg tggagtgagt cgtcgatgac tctatgacga gtcgtcggca
      601 agtcgtacac gaatcaccga cgacttggat tgaccttaca gaaggtaata ctgcgtaatt
      661 taataacaac caactaactg atattaatga gttatctgca aaaatttaat tttgcgtggg
      721 gtgtggatat ttttagtgtg aggagcgttc agagatctga cgatttttgg gaaggttcac
      781 gaacgccccg gcatggccgg agaggaaaac tcaagcatgg cgggatcagg attttttcca
      841 gaatttccac cacggggaat ggggtggtga agaaggttcg tgcttgtgct ccagaagctg
      901 catagcctga cgaagggaat caatatgctc atctcgagcc ttaacagccc ctttaagacc
      961 atcgttttca gcttcaagta aagcgattct atgttgtaaa tcatgtaaac caacgctgtt
     1021 aatacctgta gattctgcgt cactttttac atcatcgatt acaccatcaa gagaaccaaa
     1081 cactctaata agctctgatg tatcaataac tttaataccc ttcccgtgct ttacaacaga
     1141 ggtgtaactt aacttaccac tgttaatcat cttgtaaata gtagggcgac taaccttaac
     1201 aagccgtgct gcttcactaa tagacactct ggccatcagt taccatcctg taatgcatcc
     1261 agtctcgagg acagtgtacg gaaaagatgc tccgcatcat cgtggagttt ctcacaaagg
     1321 tcggcctcag catcgagatc aagctcgtta agcttctcca gcaggagcag agactgattc
     1381 tggatgaatt tagccatgtt cagcgcagtt ttctgttgtt tcgtcataag ggacctcaga
     1441 gcatcagtgc tcagtgtaaa accggtaagg gggtcggatg tacgaatggt tcagagaacg
     1501 gatctgaggt aatcctgtag ttattttgta gtttatctgt agtcatcgca ctaaaaatca
     1561 ggattaagtc atcagctttt gtagtctttc tgtagtttac ctgtagtccg gaaaaataat
     1621 ccgttcatgc gagcatgaac gaggtcgtta atgacgtttt tttgtcaccg acgcccctta
     1681 acctccgcag atcacccggc cagaatgata attgtttggc ccttaaatgg tcatacacct
     1741 aacgcagccg cgattttcat cgcaactgca tgaatcaaaa ggtaaaaatt gaaacctccg
     1801 tttatttatg taatacgcaa cgtattacaa tcacctgtaa ccacatgaaa ataaagaaat
     1861 aaaatgtaat accggcgtat taccacgtac gcgggcaagc gaaaaagcta taacgcttcc
     1921 cggccgacag gtggcccgga atccacaggg gcgtgcaggt tctcttcagt aacctgcgcc
     1981 attaaatcaa aaaggtcata ttcgccggga agctgcgtat cagtcgaatc cagttgttca
     2041 tcatattcag atggcatggg gtgatatcca gtagctgaga ggttgttagc gggtttcggg
     2101 gcgcagccct gaaccagtca agtagcacta gcggagtgta tacgggctca atatgctacg
     2161 gtggagtaac acgttatgaa agcgcgtcat gtgacagagg aaagtgcagc ggcggggcgt
     2221 acgggagaaa atggaagccc ggggatatga cgcctcctcg ctcactcagt cgctgccgct
     2281 cctgccgttc ggctgcggcg ggcgttacct gcacacggat aagagcaaag acatacggca
     2341 tgacaagcgg ggcagcaaaa gaatgcgccg ctgccgtttt tccataggct ccgcccccct
     2401 gacaagcatc acagaatcgg acgctcaaat cagtggtggc gaaacccgac aggactataa
     2461 agatatcagg cgtttccccc tgatggctcc ctcgtgcgct ctcctgttcc tgcctttcgg
     2521 tttaccggtg tcattccgct gttatggccg cgtttgtctc attccacgcc tgacactcag
     2581 ttccgggtag gcagttcgct ccaagctgga ctgtatgcac gaaccccccg ttcagtccga
     2641 ccgctgcgcc ttatccggta actatcgtct tgagtccaac ccggatagac gtgcaaatgc
     2701 gccactggca acggccactg gtaagcagga tgtgcgagag atgtatcgag agttcttgaa
     2761 gtggaggcct tagtgaggct acactggaag gacagatttg gtgacatgtc tcgcacaaga
     2821 ctgttaccac ggttcagaaa cttgccggtt aatgaacctt cgaaaaacca ccttgccggg
     2881 tggttttttc gtttcatact ctacaactat gctgagccat atggcaacat caattcatac
     2941 ctacatatga agaagcgatg cccatgccta acaccgttaa ttatccgcaa ataatcccgt
     3001 tcatatcgaa agggaaaatg gatgctataa aaaacacttt cggtaatacc ttaacagaca
     3061 gggaatgcta cgggatatat atatggtcgc aaaaagcgtc tgctgcaata taccctctcc
     3121 tacagcagtt agaggtaacg cttaggaact caatagataa agaagcaaca aatgttatgg
     3181 gtctgaactg gtgggatgga gtctatacag ataaaaccaa acctaaatgg gatgatttta
     3241 ttttcaacat aaacaaaggc cgagatagat ataagaagaa ttataaaaaa aacaacccat
     3301 ctgtactcag ctctttgatt gtcgttccgc atgatgacgc tatagctcat actgactttt
     3361 acacatggca agcggtccta agtgacacat ttcacacgca aaatagaaaa cacgtaaata
     3421 aatctctctg gccaaggctt acttacaagg tgctaaaagg tctagacaga aaaaaaacag
     3481 agaaagcagc aaggcttgat tttatcaacg aactaaatga gataagaaat tacagaaaca
     3541 gattatcgca caatgactgt atatggataa aaatgaactc caataactta cagtccgcag
     3601 tggaaacagt tagagaaaaa ataaataaaa ttgaagactt aataaaaaca attaaccctc
     3661 aaatacattc aaccctggtt aaatggggag ttttctacca tgcgagaaga atttgctctc
     3721 aaagagaggt tgagcatcat atggggaaaa acatagtaaa ctgcaccaac ccaactatga
     3781 gctctatttt agcaaccatt tactcatgga cggacgatgg aaagctaacc agcgtcgtga
     3841 atgacggtaa aaacgacctt gcgatacata agttctagaa ggagaaaagg cccgacatgc
     3901 taagcatgtc gagccttttc caagtctttt gccaatatca ccttacggcg gagcgtggcc
     3961 tttattccat tataaataat gcataaaagc gaaagctcta ggcttcatta aaaatgattc
     4021 tacatcactt actcaaaaaa gagcaagact ttatgtcaca agggatcaca cgagcagccg
     4081 taaatgactt aacttgatga aaaaaaacgt ttttaatcta actaaactta cctgcctggc
     4141 tttaataaag agcttaaaaa tggtacaatc aaccatccaa gcaattgttt tataaagtca
     4201 attagcgttc catcagacaa aaaataatgg agagaaagga gaatgaaaac aatgaaaacg
     4261 ttctttaagg ttaaaaatct tttaaaatca atgagatact taaagcgctt cctgtcactg
     4321 aatgcgacag tgaaacgcga gtgcgcggtg gtgtgtaaca ccttcgctgt cgcattcagt
     4381 gacaggcact agtttatcac aaaaaacgat aaaagtcaat ataaccaaca c
//
