LOCUS       NZ_CP125152             2056 bp    DNA     circular CON 05-APR-2024
DEFINITION  Klebsiella pneumoniae strain 180 plasmid unnamed7, complete
            sequence.
ACCESSION   NZ_CP125152
VERSION     NZ_CP125152.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33790398
            Assembly: GCF_037477765.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Konanov,D.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAR-2023) Laboratory of mathematical biology and
            bioinformatics, Research Institute for Systems Biology and Medicine,
            Nauchniy proezd, Moscow 117246, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 108x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037477765.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 19:20:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,513
            CDSs (total)                      :: 5,386
            Genes (coding)                    :: 5,277
            CDSs (with protein)               :: 5,277
            Genes (RNA)                       :: 127
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 109
            CDSs (without protein)            :: 109
            Pseudo Genes (ambiguous residues) :: 0 of 109
            Pseudo Genes (frameshifted)       :: 38 of 109
            Pseudo Genes (incomplete)         :: 60 of 109
            Pseudo Genes (internal stop)      :: 22 of 109
            Pseudo Genes (multiple problems)  :: 10 of 109
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP125152.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="180"
                     /db_xref="taxon:573"
                     /plasmid="unnamed7"
                     /geo_loc_name="Russia"
                     /collection_date="2022"
     gene            complement(158..1147)
                     /locus_tag="P4G17_RS27555"
                     /old_locus_tag="P4G17_27535"
     CDS             complement(158..1147)
                     /locus_tag="P4G17_RS27555"
                     /old_locus_tag="P4G17_27535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_023569045.1"
                     /translation="MKNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIGELGDTLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVKHARWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESE"
                     /name="protein rep"
     gene            complement(1470..1661)
                     /locus_tag="P4G17_RS27560"
                     /old_locus_tag="P4G17_27540"
     CDS             complement(1470..1661)
                     /locus_tag="P4G17_RS27560"
                     /old_locus_tag="P4G17_27540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_020324555.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     Typing          241..430
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.906"
                     /coverage="99.0"
                     /evalue="1.72e-88"
ORIGIN
        1 gaatccgaac tcagcaatcg agtgacgtca ctttgcggcg gcagccctat cctgcatcgg
       61 agtaaaatca atcggacaag atgtgacttt ggtacaccgc caccaaggtg acggatgccc
      121 aaagtcctca tggtcagggc gcagccccga caccccgtta ctctgattcg gttttatctt
      181 tcgttggtga gcgacggtat tttctgacct cggttttcca ctcgaacgcg atgcgtgaac
      241 cgtcatcgtc gccctcggaa atatcatccc cgatcaccat gtcggcgtcg gtttcctgat
      301 cgagtttcaa tacgtctttg agtgcgccgc cggtcgccac aaagcggcgc ttgtgcgtct
      361 ggcgggtcag ttcgaggaac cattcaggat cggcgaccat gtcggccggc ttcgtggaat
      421 atttcagggt ctcggccacc gcgccgcgca ccagttcggc ggtcgcgcag gccagcgatt
      481 cgccgtcctt cggcttccgg ggtttcactg cccggacatc gacattcgga tcgtagctga
      541 cccgaaggca ctcccgccac agctcaaccc agcgcgcatg tttgacgtaa ctcttcccgt
      601 taagcatgcc aggcggaacc atcatcagtg tgtggaagtg cgggtgtgcg ctgccgtcac
      661 tgccgcgggt gacttccgtg gtgcggatcc atccctgaac tggtctgaac tctttgcgat
      721 ccttcagccg ctggaaagcc gtgttcatcc ggctcagcgt atcgcccagc tccccgatcg
      781 cacagttgcg cacggtcagg gtcaggaaca tccagcggga atcggggtaa tccgccacga
      841 tacgcggcag ggactggtag aaacgggctt gccacatcag ggagcgcctc cactggcaga
      901 caggacagtg ccggacacgg cagaaatgcg cctcacgcag cctcaggcgc gtttctccgg
      961 tttctttgag ggtagaccac ccgaaacgca gtaaaccgcc gcaggaggcc atacgcgccc
     1021 cgtagcgctc atattcggcc gcaagcaggt aaatccctcc cacgtcgtca gaaacgcttc
     1081 tgtgagcgtc ccagggcgca tctgaggggg aatagtccgt gaggttctgg agttcagggt
     1141 ttttcatgcg caccgtccca tactgggcga tggctcattt gacgtgttat cattgccgta
     1201 tcacctgtgt tgtctgtcgc aaaatagaat tcctacaggt ggtcacaccc ccgaacgatg
     1261 gccgtcgttg cgggggtcgc ttttaacgcg accactcccg acagaataac ttcaaagtca
     1321 ttttcaggca aatcacgctg aaacccttga ggcacaaggg ctgaggctta tttttaacgc
     1381 cagagttatc ccttaagtat aaatacaagg atcgcgcgca tgaaaatccg gcgattttct
     1441 gaccaatttc cctcgcgcgc acgcgaggct cacaattcag ggtccgattc tgacatcaaa
     1501 tcatgagcca acctggtcaa tttccgctga cggatatgcc ggggatcatt ttccttttcg
     1561 gccttccgct gtgcataggc cgccatgaac atttcccgat ccacatgcgc acccatctca
     1621 tcgagaatct caaacagccg gttatccagt ctgacgatca tacctacccc ctcaaaaacg
     1681 cctatcaggt ggttgcgctc actgcgtgat cacaaccacc ccctgtaagt attctacggg
     1741 tgctgtcgtc aatcactaaa tcggaaccca ctggcaagcc agcgggaccc cgcgatttag
     1801 cgtttgacga tttcgggaac ggcgaacgct gacagatttt aatctggcgg cgtgaggtgt
     1861 tggcagggtg tcggggcgca gccctgacgg atcgtttttg gtaccgacat cgtgatggcg
     1921 gtactccaaa aacacatctt gtccggtgtc agtttttgtt tttcgtgggc ttgccccacc
     1981 gcgcagtttc tcaccgaagg ggagaaacta ctaagcgcgc cttccggaaa attaccggaa
     2041 ggaaaaccca ggttcg
//
