LOCUS       NZ_CP125151             3511 bp    DNA     circular CON 05-APR-2024
DEFINITION  Klebsiella pneumoniae strain 180 plasmid unnamed6, complete
            sequence.
ACCESSION   NZ_CP125151
VERSION     NZ_CP125151.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33790398
            Assembly: GCF_037477765.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3511)
  AUTHORS   Konanov,D.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAR-2023) Laboratory of mathematical biology and
            bioinformatics, Research Institute for Systems Biology and Medicine,
            Nauchniy proezd, Moscow 117246, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 108x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037477765.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 19:20:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,513
            CDSs (total)                      :: 5,386
            Genes (coding)                    :: 5,277
            CDSs (with protein)               :: 5,277
            Genes (RNA)                       :: 127
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 109
            CDSs (without protein)            :: 109
            Pseudo Genes (ambiguous residues) :: 0 of 109
            Pseudo Genes (frameshifted)       :: 38 of 109
            Pseudo Genes (incomplete)         :: 60 of 109
            Pseudo Genes (internal stop)      :: 22 of 109
            Pseudo Genes (multiple problems)  :: 10 of 109
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP125151.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3511
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="180"
                     /db_xref="taxon:573"
                     /plasmid="unnamed6"
                     /geo_loc_name="Russia"
                     /collection_date="2022"
     gene            join(3372..3511,1..76)
                     /locus_tag="P4G17_RS27530"
                     /old_locus_tag="P4G17_27510"
     CDS             join(3372..3511,1..76)
                     /locus_tag="P4G17_RS27530"
                     /old_locus_tag="P4G17_27510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015328239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_015328239.1"
                     /translation="MTELEKQLLSALEQLQQDYSRRLDEWESAFEEWRKMSGLMQRENA
                     ALSERVSGLSRQVQSLSEQLRRLSTG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            471..653
                     /locus_tag="P4G17_RS27535"
                     /old_locus_tag="P4G17_27515"
     CDS             471..653
                     /locus_tag="P4G17_RS27535"
                     /old_locus_tag="P4G17_27515"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016265984.1"
                     /translation="MLTFIGVVVVAVIAFKLFMLFFSSSESAVERATRKYMENPTSANY
                     KIMVATRMRNEKKRG"
                     /name="hypothetical protein"
     gene            1849..2190
                     /locus_tag="P4G17_RS27540"
                     /old_locus_tag="P4G17_27520"
     CDS             1849..2190
                     /locus_tag="P4G17_RS27540"
                     /old_locus_tag="P4G17_27520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_071599364.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPTR
                     AGRLPSISPALLRQLAGMGNNLNQIARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGPDDDC"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2399..>2827
                     /locus_tag="P4G17_RS27545"
                     /old_locus_tag="P4G17_27525"
                     /pseudo=""
     CDS             2399..>2827
                     /locus_tag="P4G17_RS27545"
                     /old_locus_tag="P4G17_27525"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            2868..3365
                     /locus_tag="P4G17_RS27550"
                     /old_locus_tag="P4G17_27530"
     CDS             2868..3365
                     /locus_tag="P4G17_RS27550"
                     /old_locus_tag="P4G17_27530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_015328238.1"
                     /translation="MSSLLTASRDFEEKSKAQQQLTEERLKAAFSKHENVVKSELNASA
                     KRINDAISAHEQGMNAAMQSNRLSVLRMVGRTWLTITMVSGLLFASLSGVLWYQGNRIA
                     ANLAEIRQQRDTLSKLHMQTWGVTYLENRNGRFLVLPEGMKAETGRTVDNKTRNAVKLV
                     RE"
                     /name="MbeB family mobilization protein"
     Typing          1591..1764
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="99.429"
                     /coverage="100.0"
                     /evalue="1.19e-84"
     Typing          complement(1103..1624)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.69"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          2181..3511
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gagcgagcgc gtgtcgggct tgagcaggca ggtgcagagt ttgagcgagc agctgcgccg
       61 gttatcgaca ggctgaatga gattgagcaa cagcgatacg ggcaaacaac ggaaaaggaa
      121 ccagagaaga cagcagatct ggtaccggaa cggcaacgca cattatctca tggtgacagg
      181 gagtatggag actgataaac gcccgtctca ggtggcctga gcgtgacggg gatcatggcc
      241 attttctgcg atttcagcac acagagagtc ttttttaacc gaaatcaccg gctatgcagt
      301 gatgtgaata agtgatgcat atgcgtaaaa taaatcaggt gcgtttctgg tggttttcgg
      361 tgtacttgcc accacctttt gcccgtcagc catcagaaac gccctgagtg cctccggcgc
      421 ggtgcgggta agagatgtta tgtttaatgt tgataacagg agtaagagtg atgcttacat
      481 ttattggtgt agtggtagtc gccgttattg catttaaatt atttatgctt ttttttagtt
      541 catccgaatc tgccgtcgaa cgtgctaccc gtaaatatat ggagaaccct acgagtgcta
      601 actataaaat aatggtggct acacgcatga gaaatgagaa gaaaagaggg tgatatatgt
      661 ttgagtttat tggtttttta tttttacttt tggtgtgtta tgtctttata caaatggttg
      721 ctgtcagggt gtttcctgaa tatggagtac ggaaagcgga ggaacgatac cgtcgaaatc
      781 catcagcaga aaatgaggat ctgttatgga gagctagaag tcgtataact aaacgcaagt
      841 aatgtttcct aagtgtgttg ataggcaaac atggtgggag ttactactct cggagttaat
      901 gatcttcttg tgatcctgtc gtttcagtcg taatctcttg ctctgaaaac gaaaaaacca
      961 cctggggagg tggtttgatc gaaggttaag tcagttgggg aactgcttaa ccaggtaact
     1021 gggtatacga gaccgcagat accaaaactg ttctttcagt gtagccgcag tcaggcccat
     1081 acttcaagac ctctgaatct ctctctcgta tatcccagtt accagtggct gctgccagtg
     1141 gcgctttgtc gtgctttctc gggttggact caagatgata gttaccgggt aaggcgcagc
     1201 agtcggactg aacggggggt ttgtgcatac agtccagctt ggagcgaact gcctacccgg
     1261 aactgagtgt caggcgtgga atgagataaa cgcggccata acagcggaat gacaccggta
     1321 aaccgaaagg caggaacagg agagcgcacg agggagccgc cagggggaaa cgcctggtat
     1381 ctttatagtc ctgtcgggtt tcgccaccac tgatttgagc gtcagatttc gtgatgcttg
     1441 tcaggggggc ggagcctatg gaaaaacggc ttcgccgcgg ccctatcgct tccctgttaa
     1501 gtatcttcct ggcatcttcc aggaaatctc cgccccgttc gtaagccatt tccgctcgcc
     1561 gcagtcgaac gaccgagcgt agcgagtcag tgagcgagga agcggaatat atcctgtatc
     1621 acatattctg ctgacgcgcc ggtgccgcct tttttctcct gccacatgaa gcacttcact
     1681 gacatcctca tccgtgcaaa catagtaagc cagtatacac tccgctagcg ctacgtgact
     1741 ggttcagggc tgcgccccga aaccccactg acgcgcctgc ggcttgtcca accccgcgcc
     1801 gaccgggaaa ggctttcccg tccgtcacgg cgttatcagg aggcgattct ggcagataaa
     1861 cgcaacaaga tgctcacgat gtgggtgacg gaagacgaac accggcggtt gcttgagcgg
     1921 tgcgacggaa aacaactggc ggcgtggatg cgccagacct gccttgatga gaaaccgaca
     1981 cgcgccggca ggcttccctc gatttcgccc gcgctgctgc gtcagcttgc cggcatgggc
     2041 aataacctga accagatcgc ccggaaagtg aacgccggtg gtgccggtca tgaccgggtg
     2101 cagatcgtgg cagcgctgat ggcgatcgat gccggtctgg aacggttgcg gcatgccgta
     2161 ctggaaaaag ggccggacga tgattgttaa attccatccc cggggtcgcg gcgggggcgc
     2221 cggtcctgtg gattatcttc tgggtaaaga ccggcagcgt gaaggtgcca gcgtcctgca
     2281 ggggaagccg gaagaagtcc gggagctgat tgatgcgtcg ccgtatgtga aaaaatatac
     2341 ctccggggtg ctgtcattcg cggaggcgga cctgccgccg ggtcagcgtg aaaaactgat
     2401 ggccagcttt gagcgggttc tgatgcccgg actcgataaa gaccagtaca gcattctgtg
     2461 ggtggaacac gcagacaagg gtcgtcttga gctgaatttt ctgatcccca ataccgaatt
     2521 actgacgggg aaacgcctcc agccgtatta cgatcgtgcc gaccggccgc gcatcgatgc
     2581 gtggcagaca gtggtcaacg gcaggctggg gctacatgat ccgaacgacc cggagaaccg
     2641 gcgggcgctg gtcacgcctt caggactgcc agaaacgaag caggaagccg cagagacgat
     2701 tacacggggt ttgctgatgt tagcctcatc aggagagctg aaaacgcgtg atgacgtcac
     2761 aggggcgctc acagcggccg gttttgaggt ggtcagaacc acaaaaaaca gtatcagcat
     2821 tgccgacccg gacggggggc gaaatatccg actgagggga gccatttatg agcagtcttt
     2881 taacggcctc gagggacttc gaggagaaat cgaaagcaca gcagcagctt accgaagaga
     2941 ggctgaaagc cgcattcagc aagcacgaga acgttgtcaa atcggaactg aacgcaagcg
     3001 cgaagagaat caacgacgcc atcagcgccc acgaacaggg gatgaacgcg gcgatgcagt
     3061 cgaaccggct gagcgtgctg cgaatggtcg ggcggacgtg gctgaccatc accatggtgt
     3121 cagggctgct gttcgccagc ctgagcgggg tgctgtggta ccaggggaac cggatagcgg
     3181 cgaacctggc ggaaatcagg cagcagagag atacgctgtc gaaactgcac atgcagacgt
     3241 ggggcgtgac ctatctggag aaccgcaacg gacggtttct ggtgctgccg gaggggatga
     3301 aagccgaaac gggccggacg gtggacaaca agacgcggaa cgcggtgaag ctggtacggg
     3361 agtagagcag aatgacggaa ctggaaaaac aattgctgag cgcgttagag cagctacagc
     3421 aggactactc gagaaggctg gacgagtggg agagcgcctt cgaggaatgg cggaagatgt
     3481 ctggtcttat gcaacgggag aacgcggcgc t
//
