LOCUS       NZ_CP125137             3511 bp    DNA     circular CON 05-APR-2024
DEFINITION  Klebsiella pneumoniae strain 331 plasmid unnamed5, complete
            sequence.
ACCESSION   NZ_CP125137
VERSION     NZ_CP125137.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33790407
            Assembly: GCF_037477825.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3511)
  AUTHORS   Konanov,D.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-APR-2023) Laboratory of mathematical biology and
            bioinformatics, Research Institute for Systems Biology and Medicine,
            Nauchniy proezd, Moscow 117246, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 131x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037477825.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 19:33:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,705
            CDSs (total)                      :: 5,580
            Genes (coding)                    :: 5,441
            CDSs (with protein)               :: 5,441
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 139
            CDSs (without protein)            :: 139
            Pseudo Genes (ambiguous residues) :: 0 of 139
            Pseudo Genes (frameshifted)       :: 58 of 139
            Pseudo Genes (incomplete)         :: 82 of 139
            Pseudo Genes (internal stop)      :: 21 of 139
            Pseudo Genes (multiple problems)  :: 19 of 139
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP125137.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3511
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="331"
                     /db_xref="taxon:573"
                     /plasmid="unnamed5"
                     /geo_loc_name="Russia"
                     /collection_date="2022"
     gene            complement(306..647)
                     /locus_tag="P4G30_RS28510"
                     /old_locus_tag="P4G30_28470"
     CDS             complement(306..647)
                     /locus_tag="P4G30_RS28510"
                     /old_locus_tag="P4G30_28470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_071599364.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPTR
                     AGRLPSISPALLRQLAGMGNNLNQIARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGPDDDC"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            complement(1843..2025)
                     /locus_tag="P4G30_RS28515"
                     /old_locus_tag="P4G30_28475"
     CDS             complement(1843..2025)
                     /locus_tag="P4G30_RS28515"
                     /old_locus_tag="P4G30_28475"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016265984.1"
                     /translation="MLTFIGVVVVAVIAFKLFMLFFSSSESAVERATRKYMENPTSANY
                     KIMVATRMRNEKKRG"
                     /name="hypothetical protein"
     gene            complement(2420..2635)
                     /locus_tag="P4G30_RS28520"
                     /old_locus_tag="P4G30_28480"
     CDS             complement(2420..2635)
                     /locus_tag="P4G30_RS28520"
                     /old_locus_tag="P4G30_28480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015328239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_015328239.1"
                     /translation="MTELEKQLLSALEQLQQDYSRRLDEWESAFEEWRKMSGLMQRENA
                     ALSERVSGLSRQVQSLSEQLRRLSTG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2642..3139)
                     /locus_tag="P4G30_RS28525"
                     /old_locus_tag="P4G30_28485"
     CDS             complement(2642..3139)
                     /locus_tag="P4G30_RS28525"
                     /old_locus_tag="P4G30_28485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_015328238.1"
                     /translation="MSSLLTASRDFEEKSKAQQQLTEERLKAAFSKHENVVKSELNASA
                     KRINDAISAHEQGMNAAMQSNRLSVLRMVGRTWLTITMVSGLLFASLSGVLWYQGNRIA
                     ANLAEIRQQRDTLSKLHMQTWGVTYLENRNGRFLVLPEGMKAETGRTVDNKTRNAVKLV
                     RE"
                     /name="MbeB family mobilization protein"
     Typing          complement(733..906)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          873..1394
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.69"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(3..316)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.048"
                     /coverage="89.0"
                     /evalue="1.08e-61"
     Typing          complement(313..626)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.453"
                     /coverage="99.0"
                     /evalue="9.860000000000001e-59"
     Typing          complement(2305..3509)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 tcagctcaag acgacccttg tctgcgtgtt ccacccacag aatgctgtac tggtctttat
       61 cgagtccggg catcagaacc cgctcaaagc tggccatcag tttttcacgc tgacccggcg
      121 gcaggtccgc ctccgcgaat gacagcaccc cggaggtata ttttttcaca tacggcgacg
      181 catcaatcag ctcccggact tcttccggct tcccctgcag gacgctggca ccttcacgct
      241 gccggtcttt acccagaaga taatccacag gaccggcgcc cccgccgcga ccccggggat
      301 ggaatttaac aatcatcgtc cggccctttt tccagtacgg catgccgcaa ccgttccaga
      361 ccggcatcga tcgccatcag cgctgccacg atctgcaccc ggtcatgacc ggcaccaccg
      421 gcgttcactt tccgggcgat ctggttcagg ttattgccca tgccggcaag ctgacgcagc
      481 agcgcgggcg aaatcgaggg aagcctgccg gcgcgtgtcg gtttctcatc aaggcaggtc
      541 tggcgcatcc acgccgccag ttgttttccg tcgcaccgct caagcaaccg ccggtgttcg
      601 tcttccgtca cccacatcgt gagcatcttg ttgcgtttat ctgccagaat cgcctcctga
      661 taacgccgtg acggacggga aagcctttcc cggtcggcgc ggggttggac aagccgcagg
      721 cgcgtcagtg gggtttcggg gcgcagccct gaaccagtca cgtagcgcta gcggagtgta
      781 tactggctta ctatgttggc acggatgagg atgtcagtga agtgcttcat gtggcaggag
      841 aaaaaaggcg gcaccggcgc gtcagcagaa tatgtgatac aggatatatt ccgcttcctc
      901 gctcactgac tcgctacgct cggtcgttcg actgcggcga gcggaaatgg cttacgaacg
      961 gggcggagat ttcctggaag atgccaggaa gatacttaac agggaagcga tagggccgcg
     1021 gcgaagccgt ttttccatag gctccgcccc cctgacaagc atcacgaaat ctgacgctca
     1081 aatcagtggt ggcgaaaccc gacaggacta taaagatacc aggcgtttcc ccctggcggc
     1141 tccctcgtgc gctctcctgt tcctgccttt cggtttaccg gtgtcattcc gctgttatgg
     1201 ccgcgtttat ctcattccac gcctgacact cagttccggg taggcagttc gctccaagct
     1261 ggactgtatg cacaaacccc ccgttcagtc cgactgctgc gccttacccg gtaactatca
     1321 tcttgagtcc aacccgagaa agcacgacaa agcgccactg gcagcagcca ctggtaactg
     1381 ggatatacga gagagagatt cagaggtctt gaagtatggg cctgactgcg gctacactga
     1441 aagaacagtt ttggtatctg cggtctcgta tacccagtta cctggttaag cagttcccca
     1501 acagacttaa ccttcgatca aaccacctcc ccaggtggtt ttttcgtttt cagagcaaga
     1561 gattacgact gaaacgacag gatcacaaga agatcattaa ctccgagagt agtaactccc
     1621 accatgtttg cctatcaaca cacttaggaa acattacttg cgtttagtta tacgacttct
     1681 agctctccat aacagatcct cattttctgc tgatggattt cgacggtatc gttcctccgc
     1741 tttccgtact ccatattcag gaaacaccct gacagcaacc atttgtataa agacataaca
     1801 caccaaaagt aaaaataaaa aaccaataaa ctcaaacata tatcaccctc ttttcttctc
     1861 atttctcatg cgtgtagcca ccattatttt atagttagca ctcgtagggt tctccatata
     1921 tttacgggta gcacgttcga cggcagattc ggatgaacta aaaaaaagca taaataattt
     1981 aaatgcaata acggcgacta ccactacacc aataaatgta agcatcactc ttactcctgt
     2041 tatcaacatt aaacataaca tctcttaccc gcaccgcgcc ggaggcactc agggcgtttc
     2101 tgatggctga cgggcaaaag gtggtggcaa gtacaccgaa aaccaccaga aacgcacctg
     2161 atttatttta cgcatatgca tcacttattc acatcactgc atagccggtg atttcggtta
     2221 aaaaagactc tctgtgtgct gaaatcgcag aaaatggcca tgatccccgt cacgctcagg
     2281 ccacctgaga cgggcgttta tcagtctcca tactccctgt caccatgaga taatgtgcgt
     2341 tgccgttccg gtaccagatc tgctgtcttc tctggttcct tttccgttgt ttgcccgtat
     2401 cgctgttgct caatctcatt cagcctgtcg ataaccggcg cagctgctcg ctcaaactct
     2461 gcacctgcct gctcaagccc gacacgcgct cgctcagcgc cgcgttctcc cgttgcataa
     2521 gaccagacat cttccgccat tcctcgaagg cgctctccca ctcgtccagc cttctcgagt
     2581 agtcctgctg tagctgctct aacgcgctca gcaattgttt ttccagttcc gtcattctgc
     2641 tctactcccg taccagcttc accgcgttcc gcgtcttgtt gtccaccgtc cggcccgttt
     2701 cggctttcat cccctccggc agcaccagaa accgtccgtt gcggttctcc agataggtca
     2761 cgccccacgt ctgcatgtgc agtttcgaca gcgtatctct ctgctgcctg atttccgcca
     2821 ggttcgccgc tatccggttc ccctggtacc acagcacccc gctcaggctg gcgaacagca
     2881 gccctgacac catggtgatg gtcagccacg tccgcccgac cattcgcagc acgctcagcc
     2941 ggttcgactg catcgccgcg ttcatcccct gttcgtgggc gctgatggcg tcgttgattc
     3001 tcttcgcgct tgcgttcagt tccgatttga caacgttctc gtgcttgctg aatgcggctt
     3061 tcagcctctc ttcggtaagc tgctgctgtg ctttcgattt ctcctcgaag tccctcgagg
     3121 ccgttaaaag actgctcata aatggctccc ctcagtcgga tatttcgccc cccgtccggg
     3181 tcggcaatgc tgatactgtt ttttgtggtt ctgaccacct caaaaccggc cgctgtgagc
     3241 gcccctgtga cgtcatcacg cgttttcagc tctcctgatg aggctaacat cagcaaaccc
     3301 cgtgtaatcg tctctgcggc ttcctgcttc gtttctggca gtcctgaagg cgtgaccagc
     3361 gcccgccggt tctccgggtc gttcggatca tgtagcccca gcctgccgtt gaccactgtc
     3421 tgccacgcat cgatgcgcgg ccggtcggca cgatcgtaat acggctggag gcgtttcccc
     3481 gtcagtaatt cggtattggg gatcagaaaa t
//
