LOCUS       NZ_CP125120             3511 bp    DNA     circular CON 05-APR-2024
DEFINITION  Klebsiella pneumoniae strain 192 plasmid unnamed5, complete
            sequence.
ACCESSION   NZ_CP125120
VERSION     NZ_CP125120.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33790403
            Assembly: GCF_037477735.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3511)
  AUTHORS   Konanov,D.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAR-2023) Laboratory of mathematical biology and
            bioinformatics, Research Institute for Systems Biology and Medicine,
            Nauchniy proezd, Moscow 117246, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 85x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037477735.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 19:26:10
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,551
            CDSs (total)                      :: 5,426
            Genes (coding)                    :: 5,301
            CDSs (with protein)               :: 5,301
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 125
            CDSs (without protein)            :: 125
            Pseudo Genes (ambiguous residues) :: 0 of 125
            Pseudo Genes (frameshifted)       :: 43 of 125
            Pseudo Genes (incomplete)         :: 73 of 125
            Pseudo Genes (internal stop)      :: 24 of 125
            Pseudo Genes (multiple problems)  :: 13 of 125
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP125120.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3511
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="192"
                     /db_xref="taxon:573"
                     /plasmid="unnamed5"
                     /geo_loc_name="Russia"
                     /collection_date="2022"
     gene            complement(680..862)
                     /locus_tag="P4G28_RS27735"
                     /old_locus_tag="P4G28_27710"
     CDS             complement(680..862)
                     /locus_tag="P4G28_RS27735"
                     /old_locus_tag="P4G28_27710"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016265984.1"
                     /translation="MLTFIGVVVVAVIAFKLFMLFFSSSESAVERATRKYMENPTSANY
                     KIMVATRMRNEKKRG"
                     /name="hypothetical protein"
     gene            complement(1257..1472)
                     /locus_tag="P4G28_RS27740"
                     /old_locus_tag="P4G28_27715"
     CDS             complement(1257..1472)
                     /locus_tag="P4G28_RS27740"
                     /old_locus_tag="P4G28_27715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015328239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_015328239.1"
                     /translation="MTELEKQLLSALEQLQQDYSRRLDEWESAFEEWRKMSGLMQRENA
                     ALSERVSGLSRQVQSLSEQLRRLSTG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1479..1976)
                     /locus_tag="P4G28_RS27745"
                     /old_locus_tag="P4G28_27720"
     CDS             complement(1479..1976)
                     /locus_tag="P4G28_RS27745"
                     /old_locus_tag="P4G28_27720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_015328238.1"
                     /translation="MSSLLTASRDFEEKSKAQQQLTEERLKAAFSKHENVVKSELNASA
                     KRINDAISAHEQGMNAAMQSNRLSVLRMVGRTWLTITMVSGLLFASLSGVLWYQGNRIA
                     ANLAEIRQQRDTLSKLHMQTWGVTYLENRNGRFLVLPEGMKAETGRTVDNKTRNAVKLV
                     RE"
                     /name="MbeB family mobilization protein"
     gene            complement(<2017..2715)
                     /locus_tag="P4G28_RS27750"
                     /pseudo=""
     CDS             complement(<2017..2715)
                     /locus_tag="P4G28_RS27750"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2654..2995)
                     /locus_tag="P4G28_RS27755"
                     /old_locus_tag="P4G28_27730"
     CDS             complement(2654..2995)
                     /locus_tag="P4G28_RS27755"
                     /old_locus_tag="P4G28_27730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_071599364.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPTR
                     AGRLPSISPALLRQLAGMGNNLNQIARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGPDDDC"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          complement(3081..3254)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          2..437
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.868"
                     /coverage="100.0"
                     /evalue="1.07e-119"
     Typing          3363..3511
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.0"
                     /coverage="85.0"
                     /evalue="5.680000000000003e-57"
     Typing          complement(1142..2664)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          complement(2661..2974)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.453"
                     /coverage="99.0"
                     /evalue="9.860000000000001e-59"
ORIGIN
        1 tgcctttcgg tttaccggtg tcattccgct gttatggccg cgtttatctc attccacgcc
       61 tgacactcag ttccgggtag gcagttcgct ccaagctgga ctgtatgcac aaaccccccg
      121 ttcagtccga ctgctgcgcc ttacccggta actatcatct tgagtccaac ccgagaaagc
      181 acgacaaagc gccactggca gcagccactg gtaactggga tatacgagag agagattcag
      241 aggtcttgaa gtatgggcct gactgcggct acactgaaag aacagttttg gtatctgcgg
      301 tctcgtatac ccagttacct ggttaagcag ttccccaact gacttaacct tcgatcaaac
      361 cacctcccca ggtggttttt tcgttttcag agcaagagat tacgactgaa acgacaggat
      421 cacaagaaga tcattaactc cgagagtagt aactcccacc atgtttgcct atcaacacac
      481 ttaggaaaca ttacttgcgt ttagttatac gacttctagc tctccataac agatcctcat
      541 tttctgctga tggatttcga cggtatcgtt cctccgcttt ccgtactcca tattcaggaa
      601 acaccctgac agcaaccatt tgtataaaga cataacacac caaaagtaaa aataaaaaac
      661 caataaactc aaacatatat caccctcttt tcttctcatt tctcatgcgt gtagccacca
      721 ttattttata gttagcactc gtagggttct ccatatattt acgggtagca cgttcgacgg
      781 cagattcgga tgaactaaaa aaaagcataa ataatttaaa tgcaataacg gcgactacca
      841 ctacaccaat aaatgtaagc atcactctta ctcctgttat caacattaaa cataacatct
      901 cttacccgca ccgcgccgga ggcactcagg gcgtttctga tggctgacgg gcaaaaggtg
      961 gtggcaagta caccgaaaac caccagaaac gcacctgatt tattttacgc atatgcatca
     1021 cttattcaca tcactgcata gccggtgatt tcggttaaaa aagactctct gtgtgctgaa
     1081 atcgcagaaa atggccatga tccccgtcac gctcaggcca cctgagacgg gcgtttatca
     1141 gtctccatac tccctgtcac catgagataa tgtgcgttgc cgttccggta ccagatctgc
     1201 tgtcttctct ggttcctttt ccgttgtttg cccgtatcgc tgttgctcaa tctcattcag
     1261 cctgtcgata accggcgcag ctgctcgctc aaactctgca cctgcctgct caagcccgac
     1321 acgcgctcgc tcagcgccgc gttctcccgt tgcataagac cagacatctt ccgccattcc
     1381 tcgaaggcgc tctcccactc gtccagcctt ctcgagtagt cctgctgtag ctgctctaac
     1441 gcgctcagca attgtttttc cagttccgtc attctgctct actcccgtac cagcttcacc
     1501 gcgttccgcg tcttgttgtc caccgtccgg cccgtttcgg ctttcatccc ctccggcagc
     1561 accagaaacc gtccgttgcg gttctccaga taggtcacgc cccacgtctg catgtgcagt
     1621 ttcgacagcg tatctctctg ctgcctgatt tccgccaggt tcgccgctat ccggttcccc
     1681 tggtaccaca gcaccccgct caggctggcg aacagcagcc ctgacaccat ggtgatggtc
     1741 agccacgtcc gcccgaccat tcgcagcacg ctcagccggt tcgactgcat cgccgcgttc
     1801 atcccctgtt cgtgggcgct gatggcgtcg ttgattctct tcgcgcttgc gttcagttcc
     1861 gatttgacaa cgttctcgtg cttgctgaat gcggctttca gcctctcttc ggtaagctgc
     1921 tgctgtgctt tcgatttctc ctcgaagtcc ctcgaggccg ttaaaagact gctcataaat
     1981 ggctcccctc agtcggatat ttcgcccccc gtccgggtcg gcaatgctga tactgttttt
     2041 tgtggttctg accacctcaa aaccggccgc tgtgagcgcc cctgtgacgt catcacgcgt
     2101 tttcagctct cctgatgagg ctaacatcag caaaccccgt gtaatcgtct ctgcggcttc
     2161 ctgcttcgtt tctggcagtc ctgaaggcgt gaccagcgcc cgccggttct ccgggtcgtt
     2221 cggatcatgt agccccagcc tgccgttgac cactgtctgc cacgcatcga tgcgcggccg
     2281 gtcggcacga tcgtaatacg gctggaggcg tttccccgtc agtaattcgg tattggggat
     2341 cagaaaattc agctcaagac gacccttgtc tgcgtgttcc acccacagaa tgctgtactg
     2401 gtctttatcg agtccgggca tcagaacccg ctcaaagctg gccatcagtt tttcacgctg
     2461 acccggcggc aggtccgcct ccgcgaatga cagcaccccg gaggtatatt ttttcacata
     2521 cggcgacgca tcaatcagct cccggacttc ttccggcttc ccctgcagga cgctggcacc
     2581 ttcacgctgc cggtctttac ccagaagata atccacagga ccggcgcccc cgccgcgacc
     2641 ccggggatgg aatttaacaa tcatcgtccg gccctttttc cagtacggca tgccgcaacc
     2701 gttccagacc ggcatcgatc gccatcagcg ctgccacgat ctgcacccgg tcatgaccgg
     2761 caccaccggc gttcactttc cgggcgatct ggttcaggtt attgcccatg ccggcaagct
     2821 gacgcagcag cgcgggcgaa atcgagggaa gcctgccggc gcgtgtcggt ttctcatcaa
     2881 ggcaggtctg gcgcatccac gccgccagtt gttttccgtc gcaccgctca agcaaccgcc
     2941 ggtgttcgtc ttccgtcacc cacatcgtga gcatcttgtt gcgtttatct gccagaatcg
     3001 cctcctgata acgccgtgac ggacgggaaa gcctttcccg gtcggcgcgg ggttggacaa
     3061 gccgcaggcg cgtcagtggg gtttcggggc gcagccctga accagtcacg tagcgctagc
     3121 ggagtgtata ctggcttact atgttggcac ggatgaggat gtcagtgaag tgcttcatgt
     3181 ggcaggagaa aaaaggcggc accggcgcgt cagcagaata tgtgatacag gatatattcc
     3241 gcttcctcgc tcactgactc gctacgctcg gtcgttcgac tgcggcgagc ggaaatggct
     3301 tacgaacggg gcggagattt cctggaagat gccaggaaga tacttaacag ggaagcgata
     3361 gggccgcggc gaagccgttt ttccataggc tccgcccccc tgacaagcat cacgaaatct
     3421 gacgctcaaa tcagtggtgg cgaaacccga caggactata aagataccag gcgtttcccc
     3481 ctggcggctc cctcgtgcgc tctcctgttc c
//
