LOCUS       NZ_CP125119             4431 bp    DNA     circular CON 05-APR-2024
DEFINITION  Klebsiella pneumoniae strain 192 plasmid unnamed4, complete
            sequence.
ACCESSION   NZ_CP125119
VERSION     NZ_CP125119.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33790403
            Assembly: GCF_037477735.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4431)
  AUTHORS   Konanov,D.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAR-2023) Laboratory of mathematical biology and
            bioinformatics, Research Institute for Systems Biology and Medicine,
            Nauchniy proezd, Moscow 117246, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 85x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037477735.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 19:26:10
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,551
            CDSs (total)                      :: 5,426
            Genes (coding)                    :: 5,301
            CDSs (with protein)               :: 5,301
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 125
            CDSs (without protein)            :: 125
            Pseudo Genes (ambiguous residues) :: 0 of 125
            Pseudo Genes (frameshifted)       :: 43 of 125
            Pseudo Genes (incomplete)         :: 73 of 125
            Pseudo Genes (internal stop)      :: 24 of 125
            Pseudo Genes (multiple problems)  :: 13 of 125
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP125119.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4431
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="192"
                     /db_xref="taxon:573"
                     /plasmid="unnamed4"
                     /geo_loc_name="Russia"
                     /collection_date="2022"
     gene            join(4408..4431,1..135)
                     /locus_tag="P4G28_RS27710"
                     /old_locus_tag="P4G28_27685"
     CDS             join(4408..4431,1..135)
                     /locus_tag="P4G28_RS27710"
                     /old_locus_tag="P4G28_27685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001505258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071995248.1"
                     /translation="MHEPPVQSDRCALSGNYRLESNPDRRANAPLATATGKQDVREMYR
                     EFLKWRP"
                     /name="replication initiation protein"
     gene            326..1240
                     /locus_tag="P4G28_RS27715"
                     /old_locus_tag="P4G28_27690"
     CDS             326..1240
                     /locus_tag="P4G28_RS27715"
                     /old_locus_tag="P4G28_27690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001448734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="WP_017880353.1"
                     /translation="MPNTVNYPQIIPFISKGKMDAIKNTFGNTLTDRECYGIYIWSQKA
                     SAAIYPLLQQLEVTLRNSIDKEATNVMGLNWWDGVYTDKTKPKWDDFIFNINKGRDRYK
                     KNYKKNNPSVLSSLIVVPHDDAIAHTDFYTWQAVLSDTFHTQNRKHVNKSLWPRLTYKV
                     LKGLDRKKTEKAARLDFINELNEIRNYRNRLSHNDCIWIKMNSNNLQSAVETVREKINK
                     IEDLIKTINPQIHSTLVKWGVFYHARRICSQREVEHHMGKNIVNCTNPTMSSILATIYS
                     WTDDGKLTSVVNDGKNDLAIHKF"
                     /name="Abi family protein"
     gene            complement(2619..3029)
                     /locus_tag="P4G28_RS27720"
                     /old_locus_tag="P4G28_27695"
     CDS             complement(2619..3029)
                     /locus_tag="P4G28_RS27720"
                     /old_locus_tag="P4G28_27695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_048295909.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKGIKVID
                     TSELIRVFGSLDGVIDDVKSDAESTGINSVGLHDLQHRIALLEAENDGLKGAVKARDEH
                     IDSLRQAMQLLEHKHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(3029..3220)
                     /locus_tag="P4G28_RS27725"
                     /old_locus_tag="P4G28_27700"
     CDS             complement(3029..3220)
                     /locus_tag="P4G28_RS27725"
                     /old_locus_tag="P4G28_27700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000166328.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDAEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(3701..3850)
                     /locus_tag="P4G28_RS27730"
                     /old_locus_tag="P4G28_27705"
     CDS             complement(3701..3850)
                     /locus_tag="P4G28_RS27730"
                     /old_locus_tag="P4G28_27705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017880354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_017880354.1"
                     /translation="MPSEYDEQLDSTDTQLPGEYDLFDLMAQVTEENLHAPVDSGPPVG
                     REAL"
                     /name="hypothetical protein"
     Typing          complement(3844..4058)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="83.105"
                     /coverage="100.0"
                     /evalue="7.539999999999999e-48"
     Typing          2..256
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="81.091"
                     /coverage="91.0"
                     /evalue="1.5399999999999998e-48"
     Typing          4006..4431
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.658"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 gaccgctgcg ccttatccgg taactatcgt cttgagtcca acccggatag acgtgcaaat
       61 gcgccactgg caacggccac tggtaagcag gatgtgcgag agatgtatcg agagttcttg
      121 aagtggaggc cttagtgagg ctacactgga aggacagatt tggtgacatg tctcgcacaa
      181 gactgttacc acggttcaga aacttgccgg ttaatgaacc ttcgaaaaac caccttgccg
      241 ggtggttttt tcgtttcata ctctacaact atgctgagcc atatggcaac atcaattcat
      301 acctacatat gaagaagcga tgcccatgcc taacaccgtt aattatccgc aaataatccc
      361 gttcatatcg aaagggaaaa tggatgctat aaaaaacact ttcggtaata ccttaacaga
      421 cagggaatgc tacgggatat atatatggtc gcaaaaagcg tctgctgcaa tataccctct
      481 cctacagcag ttagaggtaa cgcttaggaa ctcaatagat aaagaagcaa caaatgttat
      541 gggtctgaac tggtgggatg gagtctatac agataaaacc aaacctaaat gggatgattt
      601 tattttcaac ataaacaaag gccgagatag atataagaag aattataaaa aaaacaaccc
      661 atctgtactc agctctttga ttgtcgttcc gcatgatgac gctatagctc atactgactt
      721 ttacacatgg caagcggtcc taagtgacac atttcacacg caaaatagaa aacacgtaaa
      781 taaatctctc tggccaaggc ttacttacaa ggtgctaaaa ggtctagaca gaaaaaaaac
      841 agagaaagca gcaaggcttg attttatcaa cgaactaaat gagataagaa attacagaaa
      901 cagattatcg cacaatgact gtatatggat aaaaatgaac tccaataact tacagtccgc
      961 agtggaaaca gttagagaaa aaataaataa aattgaagac ttaataaaaa caattaaccc
     1021 tcaaatacat tcaaccctgg ttaaatgggg agttttctac catgcgagaa gaatttgctc
     1081 tcaaagagag gttgagcatc atatggggaa aaacatagta aactgcacca acccaactat
     1141 gagctctatt ttagcaacca tttactcatg gacggacgat ggaaagctaa ccagcgtcgt
     1201 gaatgacggt aaaaacgacc ttgcgataca taagttctag aaggagaaaa ggcccgacat
     1261 gctaagcatg tcgagccttt tccaagtctt ttgccaatat caccttacgg cggagcgtgg
     1321 cctttattcc attataaata atgcataaaa gcgaaagctc taggcttcat taaaaatgat
     1381 tctacatcac ttactcaaaa aagagcaaga ctttatgtca caagggatca cacgagcagc
     1441 cgtaaatgac ttaacttgat gaaaaaaaac gtttttaatc taactaaact tacctgcctg
     1501 gctttaataa agagcttaaa aatggtacaa tcaaccatcc aagcaattgt tttataaagt
     1561 caattagcgt tccatcagac aaaaaataat ggagagaaag gagaatgaaa acaatgaaaa
     1621 cgttctttaa ggttaaaaat cttttaaaat caatgagata cttaaagcgc ttcctgtcac
     1681 tgaatgcgac agtgaaacgc gagtgcgcgg tggtgtgtaa caccttcgct gtcgcattca
     1741 gtgacaggca ctagtttatc acaaaaaacg ataaaagtca atataaccaa cactttaaaa
     1801 ccaaacattt tagctactca aaacggtaat tttaacgaag tcctcccccc ccccccctca
     1861 atacaaaccc gaatattaag ctatttacca taacatccct tgcgtgcacc gcctgagagg
     1921 ccctcagggc gtttctgacg ggaaaccggc aaaacagaca acaaaccacc cgaaaacccg
     1981 ccagaaacgc gcaggctctg tttttacggc atgcatgagt atgcgcgcaa gtgcatagcg
     2041 cggaaattca cgccattcag ccggggtaag tcctgtttcc ggcgttcttc tcctccgaaa
     2101 acggtgaacg gggacgcaat ttattgcgtg gccgtgaagc gttgccggcg cagccggaaa
     2161 accggttttc agcacgttca ggaatcgggt tcgtcgacgg ccggcaatca cgttatggca
     2221 agtcgccgga cgactcacca cacgattcac cggcgattcg actcgtgact tgactctaga
     2281 gtcaccacgg tcaaaaaaac gccaaatcga cgattcggct ctagagtcaa gtcgtcataa
     2341 gttactgata gtgtggagtg agtcgtcgat gactctatga cgagtcgtcg gcaagtcgta
     2401 cacgaatcac cgacgacttg gattgacctt acagaaggta atactgcgta atttaataac
     2461 aaccaactaa ctgatattaa tgagttatct gcaaaaattt aattttgcgt ggggtgtgga
     2521 tatttttagt gtgaggagcg ttcagagatc tgacgatttt tgggaaggtt cacgaacgcc
     2581 ccggcatggc cggagaggaa aactcaagca tggcgggatc aggatttttt ccagaatttc
     2641 caccacgggg aatggggtgg tgaagaaggt tcgtgcttgt gctccagaag ctgcatagcc
     2701 tgacgaaggg aatcaatatg ctcatctcga gccttaacag cccctttaag accatcgttt
     2761 tcagcttcaa gtaaagcgat tctatgttgt aaatcatgta aaccaacgct gttaatacct
     2821 gtagattctg cgtcactttt tacatcatcg attacaccat caagagaacc aaacactcta
     2881 ataagctctg atgtatcaat aactttaata cccttcccgt gctttacaac agaggtgtaa
     2941 cttaacttac cactgttaat catcttgtaa atagtagggc gactaacctt aacaagccgt
     3001 gctgcttcac taatagacac tctggccatc agttaccatc ctgtaatgca tccagtctcg
     3061 aggacagtgt acggaaaaga tgctccgcat catcgtggag tttctcacaa aggtcggcct
     3121 cagcatcgag atcaagctcg ttaagcttct ccagcaggag cagagactga ttctggatga
     3181 atttagccat gttcagcgca gttttctgtt gtttcgtcat aagggacctc agagcatcag
     3241 tgctcagtgt aaaaccggta agggggtcgg atgtacgaat ggttcagaga acggatctga
     3301 ggtaatcctg tagttatttt gtagtttatc tgtagtcatc gcactaaaaa tcaggattaa
     3361 gtcatcagct tttgtagtct ttctgtagtt tacctgtagt ccggaaaaat aatccgttca
     3421 tgcgagcatg aacgaggtcg ttaatgacgt ttttttgtca ccgacgcccc ttaacctccg
     3481 cagatcaccc ggccagaatg ataattgttt ggcccttaaa tggtcataca cctaacgcag
     3541 ccgcgatttt catcgcaact gcatgaatca aaaggtaaaa attgaaacct ccgtttattt
     3601 atgtaatacg caacgtatta caatcacctg taaccacatg aaaataaaga aataaaatgt
     3661 aataccggcg tattaccacg tacgcgggca agcgaaaaag ctataacgct tcccggccga
     3721 caggtggccc ggaatccaca ggggcgtgca ggttctcttc agtaacctgc gccattaaat
     3781 caaaaaggtc atattcgccg ggaagctgcg tatcagtcga atccagttgt tcatcatatt
     3841 cagatggcat ggggtgatat ccagtagctg agaggttgtt agcgggtttc ggggcgcagc
     3901 cctgaaccag tcaagtagca ctagcggagt gtatacgggc tcaatatgct acggtggagt
     3961 aacacgttat gaaagcgcgt catgtgacag aggaaagtgc agcggcgggg cgtacgggag
     4021 aaaatggaag cccggggata tgacgcctcc tcgctcactc agtcgctgcc gctcctgccg
     4081 ttcggctgcg gcgggcgtta cctgcacacg gataagagca aagacatacg gcatgacaag
     4141 cggggcagca aaagaatgcg ccgctgccgt ttttccatag gctccgcccc cctgacaagc
     4201 atcacagaat cggacgctca aatcagtggt ggcgaaaccc gacaggacta taaagatatc
     4261 aggcgtttcc ccctgatggc tccctcgtgc gctctcctgt tcctgccttt cggtttaccg
     4321 gtgtcattcc gctgttatgg ccgcgtttgt ctcattccac gcctgacact cagttccggg
     4381 taggcagttc gctccaagct ggactgtatg cacgaacccc ccgttcagtc c
//
