LOCUS       NZ_CP124434             2089 bp    DNA     circular CON 10-JUN-2024
DEFINITION  Escherichia coli strain AVS0051 plasmid pAVS0051-E, complete
            sequence.
ACCESSION   NZ_CP124434
VERSION     NZ_CP124434.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34360971
            Assembly: GCF_030038915.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2089)
  AUTHORS   Biggel,M.
  TITLE     Genomic characteristics of ESBL-producing Escherichia coli ST131
            isolated from the water ecosystem in a defined region in Switzerland
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2089)
  AUTHORS   Biggel,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-APR-2023) Institute for Food Safety and Hygiene,
            University of Zurich, Winterthurerstrasse 272, Zurich 8057,
            Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x, 100x
            Sequencing Technology :: Illumina MiniSeq, Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030038915.1-RS_2024_06_10
            Annotation Date                   :: 06/10/2024 05:14:51
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,115
            CDSs (total)                      :: 5,006
            Genes (coding)                    :: 4,785
            CDSs (with protein)               :: 4,785
            Genes (RNA)                       :: 109
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 221
            CDSs (without protein)            :: 221
            Pseudo Genes (ambiguous residues) :: 0 of 221
            Pseudo Genes (frameshifted)       :: 88 of 221
            Pseudo Genes (incomplete)         :: 158 of 221
            Pseudo Genes (internal stop)      :: 43 of 221
            Pseudo Genes (multiple problems)  :: 58 of 221
            Pseudo Genes (short protein)      :: 1 of 221
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP124434.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="AVS0051"
                     /isolation_source="environmental: river/lake"
                     /db_xref="taxon:562"
                     /plasmid="pAVS0051-E"
                     /geo_loc_name="Switzerland: Kanton Zug"
                     /collection_date="2020-08-05"
                     /collected_by="Amt fuer Verbraucherschutz, Kanton Zug"
     gene            complement(569..835)
                     /locus_tag="QJP74_RS25500"
                     /old_locus_tag="QJP74_25500"
     CDS             complement(569..835)
                     /locus_tag="QJP74_RS25500"
                     /old_locus_tag="QJP74_25500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     gene            complement(839..1804)
                     /locus_tag="QJP74_RS25505"
                     /old_locus_tag="QJP74_25505"
     CDS             complement(839..1804)
                     /locus_tag="QJP74_RS25505"
                     /old_locus_tag="QJP74_25505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001287824.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     Typing          complement(1180..1411)
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 aattgcgcaa aaaataacca caattttaac cccccaaaac aagcaccccc gaacggctta
       61 ccccaacctt ttccacacac ccgatcacca aaacagggga taaaaacaaa accctgtctt
      121 acaggtggat ggcctcactt cgtgaaacca tccaccccgc ataagttttt taatcggtgg
      181 tgtcgtcaat cactaaatcg gaaccccaaa ggggaccccc acgatttagc atttgacgag
      241 attaactctc ggagatggca tcatgctttt aacggacttt aaaaaacggt gaacggatgc
      301 ggattttaat ccgtgtctgt gaggcgttga gcaacgagca aagcgaggcg gtagaaagag
      361 agccagcggc aggctcagga cgataatccg gggaaaatgt accactcgca gagtgttaac
      421 atttgacatc ggattgtcta tcctgcattg gtgtcgagtt ggcaaggctg aggataatgc
      481 tgaggataat gcaggataga cagagcacta gagattgcat gcaatctcgt acctatcacc
      541 tcagcctgcc gctggctctt ttccagaact aagaatgcgt tcttaaaaat ccaaacttga
      601 taccgtttaa atctattttc acaaaaagag tttttaccct ctcgtttgtt ttctgaatat
      661 ataaaattaa ttcatcctca aaaccttcgt gcggatgaaa accaaatgtg ccaaaactta
      721 atccatcaat aagcaaaata aggtttttaa acctgtcagg aatcaccgct tcacttctta
      781 aaaaaaataa accaatagtc ttatttccat tcaggtattc aatattaata ttcatacgtt
      841 aatccgattt atccttctca ggggcgcgtt tgtaacgccg tttacctgaa tcccagacaa
      901 acgccgtccg cttcccgtca tcagtgccat cccctacatc gtcggcaatg acaagatcct
      961 cattggtttc tcgatccaac tggaggacgt tttttagcgc cccaccggtc gagataaaac
     1021 ggcgcttgtg aagctgccgc gtcagctcaa gaaaccactc aggatcgttt gccatatctt
     1081 ccggtttaac ggagtatttc agcgtttcag caaccgcgct ttgcagttgc tcggcaacgt
     1141 tggccacaac ctcacctgtc ttagttttta ctgcccgaat atcgatattc ggctcatagt
     1201 tcacccgcaa gcaatcgcgc cagagttcta cccaacgttc gtgcttaacg tagttcttcc
     1261 ctttaaacca agaaggttgc accatcagca gacagtgaaa atgcggatgt gcgctgccat
     1321 ccttacctcg cgtcacctcc gtagccctga tccacccctg aacaggtgat agctcctttc
     1381 gcttttccat tcgcttaaac gccgcattca ttgctgtaag gactgttcca agttcaccta
     1441 tctcgcagtt cctgacagtt aacgtcagaa acaaccatcg ggaagacggg taatccacaa
     1501 cgattttcgg tagagcctga taaaaacggg cttgccacat gagggttctt ctccactggc
     1561 agacagggca atgacggaca cggcaaaatt gcgcactacg aagccgtagg cgcgtttctc
     1621 cggtttccat gatggtagac caaccaaaac gtaacaaacc gctacaggag gccatacgga
     1681 gtgcatagcg ctcgaattca gcagcagtct ggtagatacc cccgacagaa tcggtaagcg
     1741 tgcgctgggt atcccaaact gcatcacggg ggctgtagtc cgaaaggaat ttatcttctg
     1801 acattaagcc tgctccgatc tgggcaggct gtgatttgat gtggtatatt catcacgtac
     1861 ctgtgcattg cgagccagta catgtcacca gagtttgccg ctgaggtgac acattcgaaa
     1921 tgttggggag tgttgacgca ctccccaacg ccgattaaaa acgcctcaat tctgctccat
     1981 tttctttgac ctgtcaaaac ccactcaaag cctcgtcatt actgggctaa accactattt
     2041 catacccgcc atttatccct taagtataaa tacaaggatc acgcgcgag
//
