LOCUS       NZ_CP123985             2161 bp    DNA     circular CON 01-MAY-2024
DEFINITION  Staphylococcus haemolyticus strain SH9361 plasmid pSH9361-2,
            complete sequence.
ACCESSION   NZ_CP123985
VERSION     NZ_CP123985.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34359877
            Assembly: GCF_029917065.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus haemolyticus
  ORGANISM  Staphylococcus haemolyticus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2161)
  AUTHORS   Liu,Z., Li,X., Zhang,Q. and Zhang,T.
  TITLE     Genomic characterization of Staphylococcus haemolyticus strain
            SH9361
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2161)
  AUTHORS   Liu,Z., Li,X., Zhang,Q. and Zhang,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-APR-2023) Zhuhai hospital, Jinan University, 79
            Kangning Road, Zhuhai, Guangdong 519000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Hifiasm v. 0.13-r308; Canu v. 1.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 191.64x
            Sequencing Technology             :: Illumina NovaSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029917065.1-RS_2024_05_01
            Annotation Date                   :: 05/01/2024 05:00:04
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,478
            CDSs (total)                      :: 2,394
            Genes (coding)                    :: 2,313
            CDSs (with protein)               :: 2,313
            Genes (RNA)                       :: 84
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 34 of 81
            Pseudo Genes (incomplete)         :: 40 of 81
            Pseudo Genes (internal stop)      :: 24 of 81
            Pseudo Genes (multiple problems)  :: 16 of 81
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP123985.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2161
                     /organism="Staphylococcus haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="SH9361"
                     /isolation_source="secretion"
                     /host="Homo sapiens"
                     /db_xref="taxon:1283"
                     /plasmid="pSH9361-2"
                     /geo_loc_name="China: Zhuhai"
                     /lat_lon="22.28 N 113.58 E"
                     /collection_date="2023"
                     /collected_by="Zhuhai People's Hospital"
     gene            complement(61..384)
                     /gene="qacJ"
                     /locus_tag="QHG39_RS12375"
                     /old_locus_tag="QHG39_12375"
     ARG             complement(62..384)
                     /name="qacJ"
                     /gene="qacJ"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="92.52"
                     /coverage="100.0"
     gene            713..1711
                     /locus_tag="QHG39_RS12380"
                     /old_locus_tag="QHG39_12380"
     CDS             713..1711
                     /locus_tag="QHG39_RS12380"
                     /old_locus_tag="QHG39_12380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_274411839.1"
                     /translation="MQYNTTKYIDENQDNETLKDMSKNGTQRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNVLEFKPTDEGYLKLYKTWFCKSKLCPVCNWRRSMKNSYQAQKVI
                     EAVVKEKPKARWLFLTLSTKNAIDGETLQQSLKHLTKAFDRLSRYKKVKQNLIGFMRST
                     EVTVNKNDGSYNQHMHVLLCVENAYFRKKENYITQEEWINLWQKALQVDYKPVANIKAI
                     KPNKKGDKDIQAAIKETSKYSVKSSDYLTGNHEKDAEIVQDLEQGLYRKRMLSYGGLLK
                     QKHKILNLDDAEEGNLIQTSDEEKTTEEEQKAHSITAIWNFEKQNYFLKNL"
                     /name="protein rep"
     Typing          714..1711
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.394"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gttttgggtt tgttaagggt tccgaggctc aatgtcaata aagcaattgg aataaagcaa
       61 ttaatgattt gatccaaaaa cgttaagaag cacaactcca ataataatta agattattga
      121 aaatatacta attaaattga cgctttctct gaaaactaca actgaaacta ttgttgtaag
      181 aactagtcct aatcctgccc aagttgcgta agatacattg agcggtaaat atttcatagt
      241 tacacttaaa gaaaagaaac atatcccgaa tgaaataagt gtgcctaatg ttggccaaag
      301 ttttgtaaac ccttctgctg attttaagaa actagttcct attatttcac ttataattgc
      361 tattgctaaa tataagtaag gcattattat catccttttt tttaaagttt aataatttaa
      421 attttagttt gtgtggaatt aaataaaagt cttgtatttt tcttgtgatt cgcgtggtat
      481 tgatttttgt gatttcaaaa atttgagggg gtttttgaaa cgagttgaaa acgagtttct
      541 tcttgtcttg atactatata gaaataactc gattttataa aaatgctcat tatccttgaa
      601 atgaaagggt ttagagcgtt ttttatgcgt gaaaagaatt tttgacataa aaaaacccca
      661 gtagtatgat taaagcgtct actcaataaa aaactactgg aggtcttttt atatgcaata
      721 taatactaca aaatatatag acgaaaatca agataatgaa acattgaaag atatgtctaa
      781 aaatgggaca caacgcccat ggagagagaa gaaaatcgac aatgtaagtt atgcagatat
      841 actggaaatt ttaaaaatta aaaaggcttt taacgtaaaa caatgtggta acgtcttaga
      901 atttaagccg actgatgaag ggtatttaaa actttataaa acatggtttt gtaagtcgaa
      961 attatgtccg gtttgtaatt ggaggcgttc aatgaaaaac agttatcaag cccaaaaagt
     1021 cattgaagca gtggttaaag aaaaaccaaa agcacgttgg ttatttttaa cactttcaac
     1081 aaaaaatgcg attgacggcg aaactttaca acaaagttta aagcatttaa ctaaagcttt
     1141 tgatagattg agtagatata aaaaagtaaa gcaaaatttg attggtttta tgcgttcaac
     1201 tgaggtaaca gttaataaaa atgacggtag ttataatcaa catatgcacg ttttattgtg
     1261 tgttgaaaat gcttatttta gaaaaaaaga gaattatata acgcaagaag agtggatcaa
     1321 tttatggcaa aaagctcttc aagttgatta caaacctgtt gcaaatatca aagcaattaa
     1381 gccgaataaa aaaggcgata aagatataca agctgcaatt aaagagacat caaaatactc
     1441 ggttaagtcg tctgattatt taacgggaaa ccatgaaaaa gacgcagaaa ttgttcaaga
     1501 tttggaacaa ggtttataca gaaaacgtat gttaagttat ggtggtttac ttaaacaaaa
     1561 acataaaatt ttaaatttag atgatgccga agaaggtaat ttaattcaaa cgagcgatga
     1621 agaaaaaacg accgaagaag aacaaaaagc ccattcaatt acggctattt ggaattttga
     1681 aaaacaaaat tatttcttaa aaaatttgta acgttagctt atcaaagcta gcgttttttt
     1741 atgctttttt gcccctgcag gaactatagc gttcaaccag catggttgcc cagtttttat
     1801 gccaattttt aaatttgcat gtaactgggc agtgtcttaa aaaatcgaca ctggttaagc
     1861 aaaaattttt gttttgtttt tctgattttt aaatttagct catatttgcg ttttaagagc
     1921 tgtaaaatca ttttgggtat aaatatatat aaaacacccc taaatgctct aaaaagtatc
     1981 ttaaaattgc aaatagaggt attctgattt taatttaagt atttaaatgt tttgttttat
     2041 gtattcaaaa tcaaatgacg catttatgcc gagaaaattt attgatgttg agaagaaccc
     2101 ttaactaaac ttgtggacga atgtcggcat agcgtgagct attaagccga ccattcgaca
     2161 a
//
