LOCUS       NZ_CP123984             2473 bp    DNA     circular CON 01-MAY-2024
DEFINITION  Staphylococcus haemolyticus strain SH9361 plasmid pSH9361-1,
            complete sequence.
ACCESSION   NZ_CP123984
VERSION     NZ_CP123984.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34359877
            Assembly: GCF_029917065.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus haemolyticus
  ORGANISM  Staphylococcus haemolyticus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2473)
  AUTHORS   Liu,Z., Li,X., Zhang,Q. and Zhang,T.
  TITLE     Genomic characterization of Staphylococcus haemolyticus strain
            SH9361
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2473)
  AUTHORS   Liu,Z., Li,X., Zhang,Q. and Zhang,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-APR-2023) Zhuhai hospital, Jinan University, 79
            Kangning Road, Zhuhai, Guangdong 519000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Hifiasm v. 0.13-r308; Canu v. 1.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 191.64x
            Sequencing Technology             :: Illumina NovaSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029917065.1-RS_2024_05_01
            Annotation Date                   :: 05/01/2024 05:00:04
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,478
            CDSs (total)                      :: 2,394
            Genes (coding)                    :: 2,313
            CDSs (with protein)               :: 2,313
            Genes (RNA)                       :: 84
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 34 of 81
            Pseudo Genes (incomplete)         :: 40 of 81
            Pseudo Genes (internal stop)      :: 24 of 81
            Pseudo Genes (multiple problems)  :: 16 of 81
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP123984.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2473
                     /organism="Staphylococcus haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="SH9361"
                     /isolation_source="secretion"
                     /host="Homo sapiens"
                     /db_xref="taxon:1283"
                     /plasmid="pSH9361-1"
                     /geo_loc_name="China: Zhuhai"
                     /lat_lon="22.28 N 113.58 E"
                     /collection_date="2023"
                     /collected_by="Zhuhai People's Hospital"
     gene            join(2390..2473,1..393)
                     /locus_tag="QHG39_RS12360"
                     /old_locus_tag="QHG39_12360"
     CDS             join(2390..2473,1..393)
                     /locus_tag="QHG39_RS12360"
                     /old_locus_tag="QHG39_12360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000664727.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_000664727.1"
                     /translation="MKERYGTVYKGSQRLIDEESGEVIEVDKLYRKQTSGNFVKAYIVQ
                     LISMLDMIGGKKLKIVNYILDNVHLSNNTMIATTREIAKATGTSLQTVITTLKILEEGN
                     IIKRKTGVLMLNPELLMRGDDQKQKYLLLEFGNFEQEANEKQENALSDYYSFKD"
                     /name="replication/maintenance protein RepL"
     gene            1088..1147
                     /gene="ermCL"
                     /locus_tag="QHG39_RS12365"
                     /old_locus_tag="QHG39_12365"
     CDS             1088..1147
                     /gene="ermCL"
                     /locus_tag="QHG39_RS12365"
                     /old_locus_tag="QHG39_12365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002497446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA methylase leader peptide ErmCL"
                     /protein_id="WP_002497446.1"
                     /translation="MGIFSIFVISTVHYQPNKK"
                     /name="ermCL"
     gene            1208..1942
                     /gene="erm(C)"
                     /locus_tag="QHG39_RS12370"
                     /old_locus_tag="QHG39_12370"
     ARG             1209..1939
                     /name="erm(C)"
                     /gene="erm(C)"
                     /gene_name="23S rRNA (adenine(2058)-N(6))-methyltransferase
                     Erm(C)"
                     /tool="amrfinderplus"
                     /drug_class="LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN"
                     /identity="100.0"
                     /coverage="100.0"
     ARG             1209..1942
                     /name="ErmC"
                     /gene="ErmC"
                     /gene_name="Erm 23S ribosomal RNA methyltransferase"
                     /tool="rgi"
                     /drug_class="macrolide antibiotic; lincosamide antibiotic;
                     streptogramin antibiotic; streptogramin A antibiotic;
                     streptogramin B antibiotic"
                     /identity="99.59"
                     /coverage="100.0"
     Typing          2..403
                     /name="rep_cluster_1947"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.506"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttataccgta aacaaacgtc tggtaacttc gtaaaggcat atatagtgca attaataagt
       61 atgttagata tgattggcgg aaaaaaactt aaaatcgtta actatatcct agataatgtc
      121 cacttaagta acaatacaat gatagctaca acaagagaaa tagcaaaagc tacaggaaca
      181 agtctacaaa cagtaataac aacacttaaa atcttagaag aaggaaatat tataaaaaga
      241 aaaactggag tattaatgtt aaaccctgaa ctactaatga gaggcgacga ccaaaaacaa
      301 aaatacctct tactcgaatt tgggaacttt gagcaagagg caaatgaaaa acaagaaaat
      361 gcattatctg attattattc tttcaaggac tagtataaca taaaatcgtc tacaaataga
      421 caaaaaacct gcacgcttaa tgtagatcaa aagcttaacg caaatgaaat agattgacct
      481 cccaataaca ccacgtagtt attgggaggt caatctatga aatgcgatta agctttttct
      541 aattcacata agcgtgcagg tttaaagtac ataaaaaata taatgaaaaa aagcatcatt
      601 atactaacgt tataccaaca ttatactctc attatactaa ttgcttattc caatttccta
      661 ttggttggaa ccaacaggcg ttagtgtgtt gttgagttgg tactttcatg ggattaatcc
      721 catgaaaccc ccaaccaact cgccaaagct ttggctaaca cacacgccat tccaaccaat
      781 agttttctcg gcataaagcc atgctctgac gcttaaatgc actaatgcct taaaaaaaca
      841 ttaaagtcta acatactaga cttatttact tcgtaattaa gtcgttaaac cgtgtgctct
      901 acgaccaaaa gtataaaacc tttaagaact ttcttttttc ttgtaaaaaa agaaactaga
      961 taaatctctc atatctttta ttcaataatc gcatcagatt gcagtataaa tttaacgatc
     1021 actcatcatg ttcatattta tcagagctcg tgctataatt atactaattt tataaggagg
     1081 aaaaaatatg ggcattttta gtatttttgt aatcagcaca gttcattatc aaccaaacaa
     1141 aaaataagtg gttataatga atcgttaata agcaaaattc attataacca aattaaagag
     1201 ggttataatg aacgagaaaa atataaaaca cagtcaaaac tttattactt caaaacataa
     1261 tatagataaa ataatgacaa atataagatt aaatgaacat gataatatct ttgaaatcgg
     1321 ctcaggaaaa gggcatttta cccttgaatt agtacagagg tgtaatttcg taactgccat
     1381 tgaaatagac cataaattat gcaaaactac agaaaataaa cttgttgatc acgataattt
     1441 ccaagtttta aacaaggata tattgcagtt taaatttcct aaaaaccaat cctataaaat
     1501 atttggtaat ataccttata acataagtac ggatataata cgcaaaattg tttttgatag
     1561 tatagctgat gagatttatt taatcgtgga atacgggttt gctaaaagat tattaaatac
     1621 aaaacgctca ttggcattat ttttaatggc agaagttgat atttctatat taagtatggt
     1681 tccaagagaa tattttcatc ctaaacctaa agtgaatagc tcacttatca gattaaatag
     1741 aaaaaaatca agaatatcac acaaagataa acagaagtat aattatttcg ttatgaaatg
     1801 ggttaacaaa gaatacaaga aaatatttac aaaaaatcaa tttaacaatt ccttaaaaca
     1861 tgcaggaatt gacgatttaa acaatattag ctttgaacaa ttcttatctc ttttcaatag
     1921 ctataaatta tttaataagt aagttaaggg atgcagttta tgcatccctt aacttgtttt
     1981 tcgtgtacct attttttgtg aatcgattat gtcttttgcg cattcacttc ttttctatat
     2041 aaatatgagc gaagcgaata agcgtcggaa aagcagcaaa aagtttcctt tttgctgttg
     2101 gagcatgggg gttcaggggg tgcagtatct gacgtcaatg ccgagcgaaa gcgagccgaa
     2161 gggtagcatt tacgttagat aaccccctga tatgctccga cgctttatat agaaaagaag
     2221 attcaactag gtaaaatctt aatataggtt gagatgataa ggtttataag gaatttgttt
     2281 gttctaattt ttcactcatt ttgttctaat ttcttttaac aaatgttctt ttttttttag
     2341 aacagttatg atatagttag aatagtttaa aataaggagt gagaaaaaga tgaaagaaag
     2401 atatggaaca gtctataaag gctctcagag gctcatagac gaagaaagtg gagaagtcat
     2461 agaggtagac aag
//
