LOCUS       NZ_CP123922             5594 bp    DNA     circular CON 11-FEB-2024
DEFINITION  Acinetobacter bereziniae strain UCO-554 plasmid unnamed4, complete
            sequence.
ACCESSION   NZ_CP123922
VERSION     NZ_CP123922.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34266404
            Assembly: GCF_029916905.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter bereziniae
  ORGANISM  Acinetobacter bereziniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 5594)
  AUTHORS   Opazo-Capurro,A., Xanthopoulou,K., Gonzalez-Munoz,P.,
            Hormazabal,J.C., Vera,R., Higgins,P.G. and Gonzalez-Rocha,G.
  TITLE     Carbapenem resistance in Acinetobacter bereziniae from Chile is
            mediated by plasmid-encoded NDM-1 carbapenemases
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5594)
  AUTHORS   Opazo-Capurro,A., Xanthopoulou,K., Gonzalez-Munoz,P.,
            Hormazabal,J.C., Vera,R., Higgins,P.G. and Gonzalez-Rocha,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2023) Microbiologia, Universidad de Concepcion,
            Barrio Universitario S/N, Concepcion, Bio-Bio 4070386, Chile
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100X
            Sequencing Technology :: Illumina NextSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/11/2024 10:34:24
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,328
            CDSs (total)                      :: 4,225
            Genes (coding)                    :: 4,156
            CDSs (with protein)               :: 4,156
            Genes (RNA)                       :: 103
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 78
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 25 of 69
            Pseudo Genes (incomplete)         :: 49 of 69
            Pseudo Genes (internal stop)      :: 17 of 69
            Pseudo Genes (multiple problems)  :: 16 of 69
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP123922.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5594
                     /organism="Acinetobacter bereziniae"
                     /mol_type="genomic DNA"
                     /strain="UCO-554"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:106648"
                     /plasmid="unnamed4"
                     /geo_loc_name="Chile: Santiago"
                     /lat_lon="33.26 S 70.38 W"
                     /collection_date="2020-10-16"
                     /collected_by="Hospital de Urgencia Asistencia Pblica"
     gene            complement(join(4383..5594,1..603))
                     /locus_tag="QHG51_RS21635"
                     /old_locus_tag="QHG51_21630"
     CDS             complement(join(4383..5594,1..603))
                     /locus_tag="QHG51_RS21635"
                     /old_locus_tag="QHG51_21630"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_004706791.1"
                     /translation="MIVDFFRHGSGLSKGCLDYLLGEDREREHAQVLSGDVDLTAQLID
                     SSPFAKKYTSGCLSFYEHALSDQDKQQIMQNFEECLFPGLDKDQYQILWVQHQDKVNQD
                     TGETRLELNFVIPNVELSTGKRLQPFYAPVDLDRVDLFKQITNAEHQLYDPDDPNNQQL
                     LINKKNLPKDVKDFKDQLHQRIYQAVVDGKVADRQKLVEWLESNEIKVTRQTQKSISIE
                     NPYEGATRPIRLSGEVYEQGFSATGEYRQEVQQRIATYRGTTSERYRANVTDYQRQLEH
                     KSQYHSDRYPAVRREISAEPTEQLTADREAARPVPSLATVQIEPFKANERADTDKRTAS
                     SEQKPTETAYHFEYGNDFGSCYFNYSHYCARFYGQKQVQRDTDTQYDHQRETNASGSPE
                     PIGGQFDVQHMQTAKQQSPTSMYSDQQGRRGLAEQLHGADGVLSDDRIRNTVIENHRRT
                     TAAITATTNSVAAATAEFRRDAKENYPSLISTIKGNGERTDRLSANTKVIIDNTDTISR
                     IGKKYSDLYRADQWQSQGDEPNYNELRGRTGENLNHTTVSLVTSSQSSAEFARNVRTIE
                     ANIVQMKERKKEMEQPQPKRDRGMNFGM"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(593..994)
                     /locus_tag="QHG51_RS21640"
                     /old_locus_tag="QHG51_21635"
     CDS             complement(593..994)
                     /locus_tag="QHG51_RS21640"
                     /old_locus_tag="QHG51_21635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004706792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004706792.1"
                     /translation="MEIDSVTKQKVVRERTFKVRLSESEYQLLDANNPFGSIAKLLRQS
                     AVDKATKIYNSKADDAEKIKSTKIVESSYSKTERNLILELGRIGNNVNQIAKAINTDIA
                     GTGTFDKVKLLHLLISIDQQLRELRPDDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2195..4150
                     /locus_tag="QHG51_RS21645"
                     /old_locus_tag="QHG51_21640"
     CDS             2195..4150
                     /locus_tag="QHG51_RS21645"
                     /old_locus_tag="QHG51_21640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017389689.1"
                     /GO_function="GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl sulfatase dimerization domain-containing
                     protein"
                     /protein_id="WP_004870594.1"
                     /translation="MKVKFLTVSLMFILPFSVFAANGQVEKAVIESNNAYKTKYNLDDM
                     TEFNYAQKGFIAKPTGQIKSEKGNVIWDFDAFNFLNDPAPNTVNPALWRQAKLNNNVGL
                     FKVTDRVWQIRGFDLANMTIIQGDTGWIIVDTLTSKETAEAALKFARQHLGEQKISAII
                     FTHSHIDHFGGALGVLSTEEINARKTPIIAPQGFMEEATSENLMAGSAMIRRATYMYGT
                     FLPKNAEGLVDTGLGKAVAVGKMGILEPTQLITQAEQKMTIDGLDFVFYNVPGSEAPAE
                     LTFSIPSLKLYNGAEILSHTMHNLYTLRGAKVRDALKWVGYLDQAMQHAKASDVLIAQH
                     HWPVWGNDNIQDFIKTQRDVYKFTHDQTVRYMNSGFNGAEIAEKIQLPAALDQKLYAHG
                     YYGTLKHNVKAIYQYYMGWFDAHPSNLDPLPPKAVAKKYIELAGGENNALKNARDAYAQ
                     ADYRWAAEILKHIVLNNPQNQQAKDLLANTYRQLGYAAEASTWRNFFLVGAQELQNNVP
                     LQNTSDPSDLLIHTPTERFLEAMATNLDVENLKNENQCINLVLSDTQENFSLWVENSIM
                     QFKRHDDSKDLASDCPTLTVTKPLYLKMITGQIKGVKVLLSNESKVKGNPLEIGKFFAM
                     FKRPDSTFPIVTRPND"
                     /name="alkyl sulfatase dimerization domain-containing
                     protein"
     Typing          complement(2..603)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="90.05"
                     /coverage="100.0"
                     /evalue="2.73e-117"
     Typing          complement(4387..5591)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="80.597"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 aaccaatttt tgccgatcgg caactttgcc atcgactaca gcttggtaaa tcctttggtg
       61 taactgatct ttaaaatcct tcacatcctt gggtaagttc ttcttattga ttaaaagctg
      121 ctgattgttc ggatcatcgg gatcatatag ttgatgttct gcattggtaa tctgcttaaa
      181 cagatccact cgatctaaat ccactggcgc ataaaatggc tgtagccgtt tgcctgtcga
      241 aagctcaacg tttggaatca caaaattcag ctcaagccgt gtctctccag tatcttgatt
      301 caccttatct tggtgctgta cccataaaat ttggtactga tctttatcga gaccagggaa
      361 aaggcattcc tcaaaatttt gcatgatctg ctgtttatcc tggtcagata aagcatgctc
      421 gtaaaaggat aaacaaccac tggtatattt cttggcaaaa ggactgctat caatcagttg
      481 agcggtcaag tcaacatcac cacttaaaac ctgtgcatgt tctcgctctc tatcttcacc
      541 aagcaaataa tctagacaac ctttagataa tcctgaacca tgtctaaaaa aatcaacgat
      601 catctggtcg taactcccga agttgttgat ctatggaaat caacaaatga agtaacttca
      661 ctttgtcaaa agtacctgtc cctgcaatat ccgtattaat cgctttggca atctgattca
      721 cgttattacc tatacgaccc aattctagga ttaaatttct ctctgtcttg ctatatgaag
      781 attcaacaat ctttgttgat ttaatttttt cagcatcatc tgctttggaa ttataaatct
      841 ttgttgcttt atctactgct gactgacgta gcaactttgc gattgaacca aaaggattat
      901 tggcatcgag caattgatat tctgattctg aaagtctgac tttaaacgtc cgttcccgta
      961 ctactttctg tttagttact gaatctattt ccacttgaac aatcccattc ttggtctaac
     1021 cggtttagag gaaaatcttt gatttttctt taaaccggtt ttcgggggta tcgggggtga
     1081 agcccctgat caaggtcaca gcttagcact attaaacgaa gtgaaatagg ggtaactgtg
     1141 tatccttgct tatttaaaaa gggaaagaat tatttatact aaaatttaat caaatgatac
     1201 agtatataaa ccctaataag aactggcata aatcttgtaa aacaatagca ctcaactctt
     1261 tctcaccacc accacagccc tcgctttgct caggcagatg gtgagcgttg agagagtttc
     1321 ggcaatactc tccctaaggg ctgtcattca aaaaataaca catcccctaa gtattgccga
     1381 tttaacctga ttaggctgac ggagccacgc atcggtcgta tccgcaccat gcttcacata
     1441 catggcagac aaggactaaa ggtactgcac ctctccccac gcgctccctg tcgaagtatg
     1501 gcggtatctc tgcgaggatt tctccaacat gcaacttaac caacctatac aactactctc
     1561 aacgctccgc ttttgtggga ttcccctgta acggttcagc tcctgcttct cagctttcac
     1621 tatcgctacg atgcaccagt gacacttatt ccctccacat gcaccgcata tcttccttaa
     1681 aaaggatgca cagaagctga taaggctcga atactgtcta tgtattgctt attggatgaa
     1741 cgagagtcag gtaacgaaag actttttact gatacaatgc ttgccatttt ttatcaattt
     1801 gatagaattt gaaaagcggt acaagccgaa aggtgaaatc ataacggtcg tcaaacctta
     1861 tgatcttcgt tacttgatgc tcgaacatca aataactgcg taccaccaaa tttaagacaa
     1921 aacccctcta agttgcaaga ctcagagggg tttttcttta ggttttaaca aaatttttat
     1981 ttttctctcc tactaactca tgcccaataa ggactgcgta gttttaataa aaacaggtat
     2041 attcttgtaa aatattattt tatgattcca tcataaaaaa tgatggctgt tattataatg
     2101 tttgaattga aaagcttcta ttaattcaac acatatcaaa aatagtatag acaaggaaat
     2161 caacatttat ggatattttg aagaaggaaa gacaatgaaa gttaaatttt taacggtttc
     2221 attgatgttt attttgccat tttctgtttt tgcagcaaat ggacaagtcg aaaaagcggt
     2281 cattgaatca aataatgcgt ataaaacgaa atataattta gacgatatga cagagtttaa
     2341 ttatgcgcaa aaaggcttta ttgccaagcc aacaggtcaa attaaaagtg aaaaaggcaa
     2401 tgtgatctgg gattttgatg cgtttaattt tttaaatgat ccagcaccaa atactgttaa
     2461 tcctgcacta tggcgacaag caaagctcaa caataatgtt ggtctattta aagtgacaga
     2521 tcgagtttgg caaattcgtg gttttgattt ggcaaatatg accattattc agggtgatac
     2581 tggctggatt attgtggata cattaacctc taaagaaacg gctgaagcag cacttaaatt
     2641 tgctaggcag catttaggtg agcaaaaaat ttcagccatt atctttaccc atagccatat
     2701 cgatcatttt ggtggtgcat taggcgttct ttctacagaa gaaattaacg ctagaaaaac
     2761 cccaattatt gcgccacaag gctttatgga agaagcgacc agtgaaaatt tgatggcagg
     2821 ttcagccatg atacgtcgtg cgacctatat gtatggaacc tttttaccaa agaatgctga
     2881 aggattggtg gatacaggtt taggtaaggc tgttgctgtt gggaaaatgg gaatccttga
     2941 gcctacacaa ctgatcaccc aagcagaaca gaaaatgacc attgatggtt tggattttgt
     3001 gttttataac gtgccgggtt cagaagcgcc agcagagtta accttctcta tcccatcact
     3061 gaaactttat aatggcgcag aaattctttc gcataccatg cataatcttt ataccctccg
     3121 cggtgccaaa gtccgtgatg ccttaaaatg ggtaggctat ttagaccaag caatgcagca
     3181 tgccaaagca tccgatgtat tgattgcaca acatcattgg cctgtctggg gcaatgacaa
     3241 tattcaagat tttattaaaa cccagcgaga tgtttataag ttcacacatg atcagacggt
     3301 gagatatatg aactctggtt ttaatggtgc tgaaattgcc gagaaaattc agcttccagc
     3361 ggcacttgat caaaagctat atgcgcatgg ctattatgga accttaaagc ataatgtaaa
     3421 agcgatatac caatactata tgggatggtt cgatgctcat ccttccaatt tagatccatt
     3481 accgcctaaa gctgttgcaa aaaaatatat tgagttggca ggtggggaga ataatgcatt
     3541 aaaaaatgcg cgggatgcct atgctcaagc tgactataga tgggctgccg agattttaaa
     3601 acatattgtg ttgaataacc ctcaaaacca acaagcaaaa gacttattgg caaatacgta
     3661 tcgtcaattg ggctatgctg ctgaggcttc aacttggcgt aatttctttt tggtgggtgc
     3721 tcaagagcta caaaataatg tacccctaca aaatacatct gatccgagtg atttattgat
     3781 tcacacgcca actgaaagat ttcttgaagc catggcgaca aatttagatg tggaaaattt
     3841 aaaaaatgaa aaccagtgta tcaatctggt tttgtcggat acccaagaga atttttcatt
     3901 atgggttgaa aactcaatca tgcagtttaa gcgtcatgat gacagtaaag atttggcatc
     3961 ggattgccca acattaaccg taaccaagcc cttatatcta aaaatgatta caggtcaaat
     4021 aaaaggggta aaagtcctgc tttctaacga aagtaaagtc aaaggcaatc cattggaaat
     4081 tggaaaattc tttgcaatgt ttaaacgtcc agactcaact tttccaattg tcactcgacc
     4141 aaatgattag gatgaaatga ctgggcttaa agaaccctac caaattaaag tctccgcttt
     4201 tatgtgcaca cattagtgca cataaataca aaattagttt aattatttca ataatttaca
     4261 atcaataaaa aagcctaact tgtctaagtc gggctttttt attgattctt cacgtttcac
     4321 gcctaatatt taatcattgt tccatatttt tgattagcaa cagtcggaat cgagcataaa
     4381 ccctacatgc caaaattcat gccccgatct cgcttaggtt ggggctgctc catttccttt
     4441 ttccgttcct tcatttggac gatattcgct tcaatagttc ggacgtttcg agcaaattct
     4501 gctgagcttt ggctacttgt gacgagactg accgttgtgt ggttgagatt ttctccagta
     4561 cgtcctcgta attcgttgta atttggctca tctccctgac tttgccattg atctgctcgg
     4621 tataggtcgc tgtatttttt tccaattcgt gaaattgtgt ctgtattgtc gataatgact
     4681 tttgtgtttg cactaagtct gtctgtacgc tctccattgc ctttgattgt gctgataagg
     4741 cttggataat tttcttttgc atcacgtcta aactctgctg ttgctgctgc aactgagttt
     4801 gttgttgctg taattgctgc tgttgttctt cgatgatttt caataactgt gtttctaatt
     4861 cggtcatcac ttaatacccc atcggcacca tgaagttgtt ctgccaatcc cctgcgtcct
     4921 tgttgatctg aatacataga cgttgggctt tgctgttttg ctgtctgcat gtgctgaacg
     4981 tcaaactgcc ccccgatcgg ttcaggtgat ccactcgcat ttgtttctcg ttgatggtca
     5041 tattgagtgt ccgtatctcg ttgtacttgc ttttgcccat aaaaccgagc gcaataatga
     5101 gaataattaa aatagcagct cccaaaatca ttgccatatt caaagtggta agctgtttca
     5161 gtaggctttt gttctgaact tgctgttctt ttgtctgtat ctgctcgttc atttgcttta
     5221 aacggctcaa tttggactgt agcaaggctt ggtactggtc gagctgcttc tcgatctgct
     5281 gtgagctgtt ctgtaggttc tgcgctaatt tctcgtctga ctgctggata gcggtcgctg
     5341 tgatattggc tcttgtgctc aagctgtctt tgataatctg tgacgtttgc tcgataccgc
     5401 tcagaagttg ttcctcggta cgttgcaatt cgctgttgta cttcttgtcg atattcgcca
     5461 gtagcgctaa agccttgctc ataaacctct ccacttaaac ggataggacg tgttgcgccc
     5521 tcgtatggat tttcgattga tattgatttt tgggtttgtc gggtgacttt gatttcattc
     5581 gattcaagcc attc
//
