LOCUS       NZ_CP123917             5594 bp    DNA     circular CON 01-MAY-2024
DEFINITION  Acinetobacter bereziniae strain UCO-553 plasmid unnamed5, complete
            sequence.
ACCESSION   NZ_CP123917
VERSION     NZ_CP123917.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34266403
            Assembly: GCF_029916945.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter bereziniae
  ORGANISM  Acinetobacter bereziniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 5594)
  AUTHORS   Opazo-Capurro,A., Xanthopoulou,K., Gonzalez-Munoz,P.,
            Hormazabal,J.C., Vera,R., Higgins,P.G. and Gonzalez-Rocha,G.
  TITLE     Carbapenem resistance in Acinetobacter bereziniae from Chile is
            mediated by plasmid-encoded NDM-1 carbapenemases
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5594)
  AUTHORS   Opazo-Capurro,A., Xanthopoulou,K., Gonzalez-Munoz,P.,
            Hormazabal,J.C., Vera,R., Higgins,P.G. and Gonzalez-Rocha,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2023) Microbiologia, Universidad de Concepcion,
            Barrio Universitario S/N, Concepcion, Bio-Bio 4070386, Chile
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100X
            Sequencing Technology :: Illumina NextSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029916945.1-RS_2024_05_01
            Annotation Date                   :: 05/01/2024 05:33:52
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,329
            CDSs (total)                      :: 4,226
            Genes (coding)                    :: 4,159
            CDSs (with protein)               :: 4,159
            Genes (RNA)                       :: 103
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 78
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 25 of 67
            Pseudo Genes (incomplete)         :: 47 of 67
            Pseudo Genes (internal stop)      :: 17 of 67
            Pseudo Genes (multiple problems)  :: 16 of 67
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP123917.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5594
                     /organism="Acinetobacter bereziniae"
                     /mol_type="genomic DNA"
                     /strain="UCO-553"
                     /isolation_source="tracheal aspirate"
                     /host="Homo sapiens"
                     /db_xref="taxon:106648"
                     /plasmid="unnamed5"
                     /geo_loc_name="Chile: Santiago"
                     /lat_lon="33.26 S 70.38 W"
                     /collection_date="2021-02-16"
                     /collected_by="Hospital de Urgencia Asistencia Pblica"
     gene            948..1349
                     /locus_tag="QHG52_RS21640"
     CDS             948..1349
                     /locus_tag="QHG52_RS21640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004706792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004706792.1"
                     /translation="MEIDSVTKQKVVRERTFKVRLSESEYQLLDANNPFGSIAKLLRQS
                     AVDKATKIYNSKADDAEKIKSTKIVESSYSKTERNLILELGRIGNNVNQIAKAINTDIA
                     GTGTFDKVKLLHLLISIDQQLRELRPDDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1339..3153
                     /locus_tag="QHG52_RS21645"
     CDS             1339..3153
                     /locus_tag="QHG52_RS21645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004706791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_004706791.1"
                     /translation="MIVDFFRHGSGLSKGCLDYLLGEDREREHAQVLSGDVDLTAQLID
                     SSPFAKKYTSGCLSFYEHALSDQDKQQIMQNFEECLFPGLDKDQYQILWVQHQDKVNQD
                     TGETRLELNFVIPNVELSTGKRLQPFYAPVDLDRVDLFKQITNAEHQLYDPDDPNNQQL
                     LINKKNLPKDVKDFKDQLHQRIYQAVVDGKVADRQKLVEWLESNEIKVTRQTQKSISIE
                     NPYEGATRPIRLSGEVYEQGFSATGEYRQEVQQRIATYRGTTSERYRANVTDYQRQLEH
                     KSQYHSDRYPAVRREISAEPTEQLTADREAARPVPSLATVQIEPFKANERADTDKRTAS
                     SEQKPTETAYHFEYGNDFGSCYFNYSHYCARFYGQKQVQRDTDTQYDHQRETNASGSPE
                     PIGGQFDVQHMQTAKQQSPTSMYSDQQGRRGLAEQLHGADGVLSDDRIRNTVIENHRRT
                     TAAITATTNSVAAATAEFRRDAKENYPSLISTIKGNGERTDRLSANTKVIIDNTDTISR
                     IGKKYSDLYRADQWQSQGDEPNYNELRGRTGENLNHTTVSLVTSSQSSAEFARNVRTIE
                     ANIVQMKERKKEMEQPQPKRDRGMNFGM"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(3386..5341)
                     /locus_tag="QHG52_RS21650"
     CDS             complement(3386..5341)
                     /locus_tag="QHG52_RS21650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017389689.1"
                     /GO_function="GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl sulfatase dimerization domain-containing
                     protein"
                     /protein_id="WP_004870594.1"
                     /translation="MKVKFLTVSLMFILPFSVFAANGQVEKAVIESNNAYKTKYNLDDM
                     TEFNYAQKGFIAKPTGQIKSEKGNVIWDFDAFNFLNDPAPNTVNPALWRQAKLNNNVGL
                     FKVTDRVWQIRGFDLANMTIIQGDTGWIIVDTLTSKETAEAALKFARQHLGEQKISAII
                     FTHSHIDHFGGALGVLSTEEINARKTPIIAPQGFMEEATSENLMAGSAMIRRATYMYGT
                     FLPKNAEGLVDTGLGKAVAVGKMGILEPTQLITQAEQKMTIDGLDFVFYNVPGSEAPAE
                     LTFSIPSLKLYNGAEILSHTMHNLYTLRGAKVRDALKWVGYLDQAMQHAKASDVLIAQH
                     HWPVWGNDNIQDFIKTQRDVYKFTHDQTVRYMNSGFNGAEIAEKIQLPAALDQKLYAHG
                     YYGTLKHNVKAIYQYYMGWFDAHPSNLDPLPPKAVAKKYIELAGGENNALKNARDAYAQ
                     ADYRWAAEILKHIVLNNPQNQQAKDLLANTYRQLGYAAEASTWRNFFLVGAQELQNNVP
                     LQNTSDPSDLLIHTPTERFLEAMATNLDVENLKNENQCINLVLSDTQENFSLWVENSIM
                     QFKRHDDSKDLASDCPTLTVTKPLYLKMITGQIKGVKVLLSNESKVKGNPLEIGKFFAM
                     FKRPDSTFPIVTRPND"
                     /name="alkyl sulfatase dimerization domain-containing
                     protein"
     Typing          1340..3150
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gtcttgcaac ttagaggggt tttgtcttaa atttggtggt acgcagttat ttgatgttcg
       61 agcatcaagt aacgaagatc ataaggtttg acgaccgtta tgatttcacc tttcggcttg
      121 taccgctttt caaattctat caaattgata aaaaatggca agcattgtat cagtaaaaag
      181 tctttcgtta cctgactctc gttcatccaa taagcaatac atagacagta ttcgagcctt
      241 atcagcttct gtgcatcctt tttaaggaag atatgcggtg catgtggagg gaataagtgt
      301 cactggtgca tcgtagcgat agtgaaagct gagaagcagg agctgaaccg ttacagggga
      361 atcccacaaa agcggagcgt tgagagtagt tgtataggtt ggttaagttg catgttggag
      421 aaatcctcgc agagataccg ccatacttcg acagggagcg cgtggggaga ggtgcagtac
      481 ctttagtcct tgtctgccat gtatgtgaag catggtgcgg atacgaccga tgcgtggctc
      541 cgtcagccta atcaggttaa atcggcaata cttaggggat gtgttatttt ttgaatgaca
      601 gcccttaggg agagtattgc cgaaactctc tcaacgctca ccatctgcct gagcaaagcg
      661 agggctgtgg tggtggtgag aaagagttga gtgctattgt tttacaagat ttatgccagt
      721 tcttattagg gtttatatac tgtatcattt gattaaattt tagtataaat aattctttcc
      781 ctttttaaat aagcaaggat acacagttac ccctatttca cttcgtttaa tagtgctaag
      841 ctgtgacctt gatcaggggc ttcacccccg atacccccga aaaccggttt aaagaaaaat
      901 caaagatttt cctctaaacc ggttagacca agaatgggat tgttcaagtg gaaatagatt
      961 cagtaactaa acagaaagta gtacgggaac ggacgtttaa agtcagactt tcagaatcag
     1021 aatatcaatt gctcgatgcc aataatcctt ttggttcaat cgcaaagttg ctacgtcagt
     1081 cagcagtaga taaagcaaca aagatttata attccaaagc agatgatgct gaaaaaatta
     1141 aatcaacaaa gattgttgaa tcttcatata gcaagacaga gagaaattta atcctagaat
     1201 tgggtcgtat aggtaataac gtgaatcaga ttgccaaagc gattaatacg gatattgcag
     1261 ggacaggtac ttttgacaaa gtgaagttac ttcatttgtt gatttccata gatcaacaac
     1321 ttcgggagtt acgaccagat gatcgttgat ttttttagac atggttcagg attatctaaa
     1381 ggttgtctag attatttgct tggtgaagat agagagcgag aacatgcaca ggttttaagt
     1441 ggtgatgttg acttgaccgc tcaactgatt gatagcagtc cttttgccaa gaaatatacc
     1501 agtggttgtt tatcctttta cgagcatgct ttatctgacc aggataaaca gcagatcatg
     1561 caaaattttg aggaatgcct tttccctggt ctcgataaag atcagtacca aattttatgg
     1621 gtacagcacc aagataaggt gaatcaagat actggagaga cacggcttga gctgaatttt
     1681 gtgattccaa acgttgagct ttcgacaggc aaacggctac agccatttta tgcgccagtg
     1741 gatttagatc gagtggatct gtttaagcag attaccaatg cagaacatca actatatgat
     1801 cccgatgatc cgaacaatca gcagctttta atcaataaga agaacttacc caaggatgtg
     1861 aaggatttta aagatcagtt acaccaaagg atttaccaag ctgtagtcga tggcaaagtt
     1921 gccgatcggc aaaaattggt tgaatggctt gaatcgaatg aaatcaaagt cacccgacaa
     1981 acccaaaaat caatatcaat cgaaaatcca tacgagggcg caacacgtcc tatccgttta
     2041 agtggagagg tttatgagca aggctttagc gctactggcg aatatcgaca agaagtacaa
     2101 cagcgaattg caacgtaccg aggaacaact tctgagcggt atcgagcaaa cgtcacagat
     2161 tatcaaagac agcttgagca caagagccaa tatcacagcg accgctatcc agcagtcaga
     2221 cgagaaatta gcgcagaacc tacagaacag ctcacagcag atcgagaagc agctcgacca
     2281 gtaccaagcc ttgctacagt ccaaattgag ccgtttaaag caaatgaacg agcagataca
     2341 gacaaaagaa cagcaagttc agaacaaaag cctactgaaa cagcttacca ctttgaatat
     2401 ggcaatgatt ttgggagctg ctattttaat tattctcatt attgcgctcg gttttatggg
     2461 caaaagcaag tacaacgaga tacggacact caatatgacc atcaacgaga aacaaatgcg
     2521 agtggatcac ctgaaccgat cggggggcag tttgacgttc agcacatgca gacagcaaaa
     2581 cagcaaagcc caacgtctat gtattcagat caacaaggac gcaggggatt ggcagaacaa
     2641 cttcatggtg ccgatggggt attaagtgat gaccgaatta gaaacacagt tattgaaaat
     2701 catcgaagaa caacagcagc aattacagca acaacaaact cagttgcagc agcaacagca
     2761 gagtttagac gtgatgcaaa agaaaattat ccaagcctta tcagcacaat caaaggcaat
     2821 ggagagcgta cagacagact tagtgcaaac acaaaagtca ttatcgacaa tacagacaca
     2881 atttcacgaa ttggaaaaaa atacagcgac ctataccgag cagatcaatg gcaaagtcag
     2941 ggagatgagc caaattacaa cgaattacga ggacgtactg gagaaaatct caaccacaca
     3001 acggtcagtc tcgtcacaag tagccaaagc tcagcagaat ttgctcgaaa cgtccgaact
     3061 attgaagcga atatcgtcca aatgaaggaa cggaaaaagg aaatggagca gccccaacct
     3121 aagcgagatc ggggcatgaa ttttggcatg tagggtttat gctcgattcc gactgttgct
     3181 aatcaaaaat atggaacaat gattaaatat taggcgtgaa acgtgaagaa tcaataaaaa
     3241 agcccgactt agacaagtta ggctttttta ttgattgtaa attattgaaa taattaaact
     3301 aattttgtat ttatgtgcac taatgtgtgc acataaaagc ggagacttta atttggtagg
     3361 gttctttaag cccagtcatt tcatcctaat catttggtcg agtgacaatt ggaaaagttg
     3421 agtctggacg tttaaacatt gcaaagaatt ttccaatttc caatggattg cctttgactt
     3481 tactttcgtt agaaagcagg acttttaccc cttttatttg acctgtaatc atttttagat
     3541 ataagggctt ggttacggtt aatgttgggc aatccgatgc caaatcttta ctgtcatcat
     3601 gacgcttaaa ctgcatgatt gagttttcaa cccataatga aaaattctct tgggtatccg
     3661 acaaaaccag attgatacac tggttttcat tttttaaatt ttccacatct aaatttgtcg
     3721 ccatggcttc aagaaatctt tcagttggcg tgtgaatcaa taaatcactc ggatcagatg
     3781 tattttgtag gggtacatta ttttgtagct cttgagcacc caccaaaaag aaattacgcc
     3841 aagttgaagc ctcagcagca tagcccaatt gacgatacgt atttgccaat aagtcttttg
     3901 cttgttggtt ttgagggtta ttcaacacaa tatgttttaa aatctcggca gcccatctat
     3961 agtcagcttg agcataggca tcccgcgcat tttttaatgc attattctcc ccacctgcca
     4021 actcaatata tttttttgca acagctttag gcggtaatgg atctaaattg gaaggatgag
     4081 catcgaacca tcccatatag tattggtata tcgcttttac attatgcttt aaggttccat
     4141 aatagccatg cgcatatagc ttttgatcaa gtgccgctgg aagctgaatt ttctcggcaa
     4201 tttcagcacc attaaaacca gagttcatat atctcaccgt ctgatcatgt gtgaacttat
     4261 aaacatctcg ctgggtttta ataaaatctt gaatattgtc attgccccag acaggccaat
     4321 gatgttgtgc aatcaataca tcggatgctt tggcatgctg cattgcttgg tctaaatagc
     4381 ctacccattt taaggcatca cggactttgg caccgcggag ggtataaaga ttatgcatgg
     4441 tatgcgaaag aatttctgcg ccattataaa gtttcagtga tgggatagag aaggttaact
     4501 ctgctggcgc ttctgaaccc ggcacgttat aaaacacaaa atccaaacca tcaatggtca
     4561 ttttctgttc tgcttgggtg atcagttgtg taggctcaag gattcccatt ttcccaacag
     4621 caacagcctt acctaaacct gtatccacca atccttcagc attctttggt aaaaaggttc
     4681 catacatata ggtcgcacga cgtatcatgg ctgaacctgc catcaaattt tcactggtcg
     4741 cttcttccat aaagccttgt ggcgcaataa ttggggtttt tctagcgtta atttcttctg
     4801 tagaaagaac gcctaatgca ccaccaaaat gatcgatatg gctatgggta aagataatgg
     4861 ctgaaatttt ttgctcacct aaatgctgcc tagcaaattt aagtgctgct tcagccgttt
     4921 ctttagaggt taatgtatcc acaataatcc agccagtatc accctgaata atggtcatat
     4981 ttgccaaatc aaaaccacga atttgccaaa ctcgatctgt cactttaaat agaccaacat
     5041 tattgttgag ctttgcttgt cgccatagtg caggattaac agtatttggt gctggatcat
     5101 ttaaaaaatt aaacgcatca aaatcccaga tcacattgcc tttttcactt ttaatttgac
     5161 ctgttggctt ggcaataaag cctttttgcg cataattaaa ctctgtcata tcgtctaaat
     5221 tatatttcgt tttatacgca ttatttgatt caatgaccgc tttttcgact tgtccatttg
     5281 ctgcaaaaac agaaaatggc aaaataaaca tcaatgaaac cgttaaaaat ttaactttca
     5341 ttgtctttcc ttcttcaaaa tatccataaa tgttgatttc cttgtctata ctatttttga
     5401 tatgtgttga attaatagaa gcttttcaat tcaaacatta taataacagc catcattttt
     5461 tatgatggaa tcataaaata atattttaca agaatatacc tgtttttatt aaaactacgc
     5521 agtccttatt gggcatgagt tagtaggaga gaaaaataaa aattttgtta aaacctaaag
     5581 aaaaacccct ctga
//
