LOCUS       NZ_CP122586             1307 bp    DNA     circular CON 31-MAY-2024
DEFINITION  Klebsiella pneumoniae strain NCRE-61 plasmid pNCRE-61-1.3, complete
            sequence.
ACCESSION   NZ_CP122586
VERSION     NZ_CP122586.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34111322
            Assembly: GCF_029853875.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1307)
  AUTHORS   Lin,Y. and Chen,L.
  TITLE     Emergence of OXA-48 producing hypervirulent Klebsiella pneumoniae
            strains in Taiwan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1307)
  AUTHORS   Lin,Y. and Chen,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2023) HMH-CDI, Hackensack-Meridian Health Center
            for Discovery and Innovation, 111 ideation way, Nutley, NJ 07110,
            USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 01-SEP-2022
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology :: Oxford Nanopore MiniION and Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029853875.1-RS_2024_05_31
            Annotation Date                   :: 05/31/2024 07:35:49
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,160
            CDSs (total)                      :: 6,042
            Genes (coding)                    :: 5,882
            CDSs (with protein)               :: 5,882
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 160
            CDSs (without protein)            :: 160
            Pseudo Genes (ambiguous residues) :: 0 of 160
            Pseudo Genes (frameshifted)       :: 66 of 160
            Pseudo Genes (incomplete)         :: 100 of 160
            Pseudo Genes (internal stop)      :: 23 of 160
            Pseudo Genes (multiple problems)  :: 29 of 160
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP122586.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1307
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="NCRE-61"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pNCRE-61-1.3"
                     /geo_loc_name="Taiwan"
     gene            627..1061
                     /locus_tag="QDV36_RS04190"
                     /old_locus_tag="QDV36_04185"
     CDS             627..1061
                     /locus_tag="QDV36_RS04190"
                     /old_locus_tag="QDV36_04185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001271729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_234694422.1"
                     /translation="MRKLARKSPIAHEILYYLVEHMGRTTNAVVCSYTTLCEITGVSRP
                     TVGRAIKLLKDDQWIDTVKIGNANAYCVNERVFWQAGRNQRKYAIFSATVIASATDQES
                     DFQEKAKQKLTYIPIIESSDIPTTGTDELPPPDQGDLSLE"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 gtactccaaa aacacatctt gtcccgtgcg ttttgtcacc gtcacaaagt ggcggtaata
       61 caaaacatat cctgtccctt ccttggcatc tctgaagttg agccagtata cactccgcta
      121 gcgctacgtg actggttcag ggctgcgccc cgaaacccgc aaaggtcaaa accaaaagcg
      181 cctggcaggt ggttgcgctc actgcgtgat cacaaccacc tacgggtagc atgttgggca
      241 tttttgagcg tcaaggtcga gccgcttcgc ggtcgctaaa gcgaaccttg acccccaaaa
      301 atgcccgccg aaaggcggga gctaccttcg atttttgtat ctcaatcaga ccctgattga
      361 gatatagaaa gggggtaatt gtaagttgtt gtttttttat tgtttttatg agggggagtc
      421 tcaccagcta tgagactcgg gagtctcatc agctatgaga ctctgtttta caacccatat
      481 cacgcagtga tagcatcagt ttaataatat gatgatggtt gggtctctat atgaagcaaa
      541 taaagtcacc cggtgagact atcgagtctc atggcggaaa cgaaaatttt aacttcgtgc
      601 agctctctcg gagctactta caccaaatgc gaaaattagc tcgcaaaagc cccatagcgc
      661 atgaaatttt gtattaccta gtcgaacaca tgggtagaac cacaaatgcc gttgtgtgca
      721 gttacacaac gctctgtgaa ataaccggtg taagtaggcc aactgtagga agggctataa
      781 agctcctgaa ggatgatcag tggatagata ccgtaaagat cggcaatgca aatgcctatt
      841 gcgtaaatga gagggtattc tggcaagctg gaagaaatca aagaaaatac gcgatcttct
      901 cagcaacagt tatcgcatct gccaccgatc aggagagcga tttccaagaa aaagccaaac
      961 agaaactgac ctatatccca atcattgaat ctagtgacat tcctacgact ggaactgacg
     1021 aactaccgcc gccagaccaa ggggatcttt cgttggagtg aaagccggtc aagggcgcgt
     1081 tagcggcgcc agcgaaccct tgacgggctg caacgacccc cacacttggc aaaggtggtt
     1141 gtgatcacgc agtgagcgca accacctgtt aagccgcctt tgacgttgac cttcccgaac
     1201 atcaaaacat cctgatagct ccctcgctgc gctcaggcgt aacagcgttc gggtgtcggg
     1261 gccatgccct gaccaagatg ttttggagtg tccgcggcgt gtcggcg
//
