LOCUS       NZ_CP121787             2356 bp    DNA     circular CON 05-SEP-2023
DEFINITION  Acinetobacter johnsonii strain AYTCM plasmid pAYTCM-11, complete
            sequence.
ACCESSION   NZ_CP121787
VERSION     NZ_CP121787.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34117139
            Assembly: GCF_030867405.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter johnsonii
  ORGANISM  Acinetobacter johnsonii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 2356)
  AUTHORS   Tian,C., Wang,S., Fan,X. and Xia,D.
  TITLE     Acinetobacter johnsonii isolate AYTCM encoding NDM-1, OXA-58 and
            PER-1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2356)
  AUTHORS   Tian,C., Wang,S., Fan,X. and Xia,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2023) Department of Pharmacy, Department of
            Pharmacy, Shaoxing Hospital of Traditional Chinese Medicine
            Affiliated to Zhejiang Chi, Renminzhong Road 641, Yuecheng district,
            Shaoxing, Zhejiang 312000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 150.0x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 08/25/2023 18:02:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,979
            CDSs (total)                      :: 3,866
            Genes (coding)                    :: 3,724
            CDSs (with protein)               :: 3,724
            Genes (RNA)                       :: 113
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 142
            CDSs (without protein)            :: 142
            Pseudo Genes (ambiguous residues) :: 0 of 142
            Pseudo Genes (frameshifted)       :: 57 of 142
            Pseudo Genes (incomplete)         :: 88 of 142
            Pseudo Genes (internal stop)      :: 30 of 142
            Pseudo Genes (multiple problems)  :: 29 of 142
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP121787.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2356
                     /organism="Acinetobacter johnsonii"
                     /mol_type="genomic DNA"
                     /strain="AYTCM"
                     /isolation_source="patient"
                     /db_xref="taxon:40214"
                     /plasmid="pAYTCM-11"
                     /geo_loc_name="China: Zhejiang"
                     /collection_date="2018-03-19"
     gene            complement(<634..1566)
                     /gene="repM"
                     /locus_tag="QBJ73_RS19890"
                     /old_locus_tag="QBJ73_19895"
                     /pseudo=""
     CDS             complement(<634..1566)
                     /gene="repM"
                     /locus_tag="QBJ73_RS19890"
                     /old_locus_tag="QBJ73_19895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017401951.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /name="repM"
     gene            complement(2081..2260)
                     /locus_tag="QBJ73_RS19895"
                     /old_locus_tag="QBJ73_19900"
     CDS             complement(2081..2260)
                     /locus_tag="QBJ73_RS19895"
                     /old_locus_tag="QBJ73_19900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_020847111.1"
                     /translation="MKLSDAEKNNRLSEVFLKKSDREYYDLEITEDHQKLYDQYVSGDL
                     NKQDFEEQLNKLIK"
                     /name="hypothetical protein"
ORIGIN
        1 ggcggttttt cgccatgtgt gaaaatctga tatttcaaaa cttgccgatc ggcaagtttt
       61 agcggtttgg ggggatttat cattttccga cagcagttgg gaatgcacgc ttccgcgttt
      121 ctctccgaga aacaaaaaac cgacctctga aaaagataaa aataagcccc aaaagttggg
      181 gcgttttgaa atcttttcta gaggattaat tttagtatct acctttctta taatctgaat
      241 atatcgaata cattaaaaac gcagttatta tcaataagaa aaaaataatt aaaaaaaaca
      301 tttgaaaacc caagcttagc tataaatcta ttctatttta ttaatgtata aaattacaga
      361 ggcgtgggct tttttatttt tttcttgggg aattaattgc tacttttttg catttacgta
      421 gtcataaaat tgaatctgtt gttttgggtc ttttagtatg atgcgaagcc gttgcataaa
      481 atcatctgga gattcatttt cctgttttaa gtgagcgaat ttcttgtcac gggacatatt
      541 gaacgacaag ctgttcactt gcatatttcg caattcaata aacttaggtt tatcgacctg
      601 ttggggtggt gcagatggga ttttcttaga accaaagccg agctgttcca gtagcgggta
      661 aaacatcctg aatttttttg gctctaaaag catatcggca aggcgtttcg taaagtcttc
      721 ggctgactct ccgatctctg catattcgct accaacttcg ggcagttcag ataatttgtg
      781 tgcgaacaaa tgccgttggg catcggtcat ttcaaaaaag aaattgggtg tgtttggatc
      841 tcgtttaggg tcgatttttt gttctacttt tggctgtgct ttttgtttga atcggaatga
      901 aaaccctgta actgaacgtc ccgttttatg ttgctctacc ttgatagtta tatctgtatt
      961 ttcattgatt tgcttgattg atgggtctaa tacacggact ttaaaattat taaaacggct
     1021 gtattctgaa tctaaaacac ctagtttttt tctaaaatcc tgaatatcaa taacgggagt
     1081 tttccctgta ctacgccatg cgataagtaa ttcgtaaagg cgtatagcat aaccagtatt
     1141 taaaccgcta atctgatcta tttcatagct agtaaattgt gcttccagcc tagtaattaa
     1201 tgggataata gctgatgaaa atattaattt aactacagct tctttttcta cataaatgat
     1261 ttcactgacc caacgtgcct tatggttttg aatatttcct ttttcactta ggctttggta
     1321 actgaatcta cgctcgaata ggtcatcaca agcatcttta agggctttgt aagccccatt
     1381 tctatgtacg ttaaactgat ttatatagct ttctgcatgg acagttaaag ggtcattagc
     1441 gttaatccct tttcctgatt ctctagcctc aataatggct aaaagtatta atcgttgctc
     1501 taccaaatct aagttataac tggcgttaat tagggcatta tcttttacaa ctaattcagt
     1561 tctcattcta agcctacagc ttcagttttt gtagttaatg cctacaatat attaccatgt
     1621 agtcatatgc aaactaagtg taggcattaa attgtaaact tgcaaactaa gtgtaggcat
     1681 gttgcaaact aagtgtaggc atataaactc tgaaatgcac gtatatcaat gctttcagag
     1741 tgcctaaaag catttaaaag cttttttatt attaaaagcc aaaaaaaatc aaaaaccgca
     1801 tttaaaactg ccctatgttt tcgcttcgct caaactctat tgaatctcgc tgcgctcgat
     1861 tcctgggagc agttttttca aagacaggct aagacgctaa aaacaagaat ggattcgctt
     1921 cgctcataaa gctttatgct cgcttcgctc gtcatggagc cagtggctac agtcgctttg
     1981 ctctgtaaat ctcgttatga agtaacaggg agcttgtaat cagggaaaag gcagggggcg
     2041 aatttttata acgctcagtc gctcgtagac actcgctcgg ttacttaatc aatttgttta
     2101 gttgttcttc aaaatcttgc ttgtttaaat cacctgaaac gtactgatca taaagttttt
     2161 gatgatcttc agtgatttct aaatcgtaat attctcgatc tgatttcttt aaaaacacct
     2221 ctgacaaacg attatttttt tcggcatcac tcaatttcat ggtctaaatg ctcctatttt
     2281 gcgtttattg gcgtttttag ccctgtttag ctagatttcc ctgtttttga gaaaagagcg
     2341 cttaaatgcg attcta
//
