LOCUS       NZ_CP121614             2063 bp    DNA     circular CON 17-MAY-2024
DEFINITION  Acinetobacter baumannii strain JAB117 plasmid pJAB117-3, complete
            sequence.
ACCESSION   NZ_CP121614
VERSION     NZ_CP121614.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27010226
            Assembly: GCF_029714045.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2063)
  AUTHORS   Alghorbi,M.F., Bawazeer,R., Okdah,L., Alswaji,A., Alzayer,M.A.,
            Alrashidi,E., Alshahrani,A.S., Al Johani,S.M., NGHA Surveillance
            Group,N.S.G., Balkhy,H. and Doumith,M.
  TITLE     Antimicrobial resistance and genomic characterisation of
            Acinetobacter baumannii clinical isolates from a nation
            representative surveillance in Saudi Arabia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2063)
  AUTHORS   Alghorbi,M.F., Bawazeer,R., Okdah,L., Alswaji,A., Alzayer,M.A.,
            Alrashidi,E., Alshahrani,A.S., Al Johani,S.M., NGHA Surveillance
            Group,N.S.G., Balkhy,H. and Doumith,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-APR-2023) Infectious Diseases Research, King Abdullah
            International Medical Research Center (KAIMRC), KAIMRC, P.O Box
            22490, Riyadh 11426, Saudi Arabia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: EToKi v. 1.2
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 68x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029714045.1-RS_2024_05_17
            Annotation Date                   :: 05/17/2024 04:53:48
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,865
            CDSs (total)                      :: 3,770
            Genes (coding)                    :: 3,656
            CDSs (with protein)               :: 3,656
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 114
            CDSs (without protein)            :: 114
            Pseudo Genes (ambiguous residues) :: 0 of 114
            Pseudo Genes (frameshifted)       :: 57 of 114
            Pseudo Genes (incomplete)         :: 47 of 114
            Pseudo Genes (internal stop)      :: 18 of 114
            Pseudo Genes (multiple problems)  :: 8 of 114
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP121614.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2063
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="JAB117"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pJAB117-3"
                     /geo_loc_name="Saudi Arabia:Jeddah"
                     /lat_lon="21.4858 N 39.1925 E"
                     /collection_date="2018"
                     /collected_by="KAIMRC AMR WGS_Based Surveillance Program"
ORIGIN
        1 ggttgcacca aatgcaccgg tgcttgatcc gatcaatgca acagacccag tgagcggtca
       61 ggcagagcct ggttcaaccg tgactgtgac ttatcctgat ggcaccactg caacagtggt
      121 agcaggcaca gatggcagct ggtcagtacc aaacccaggt aacctggtgg atggcgatac
      181 agtgactgca acagcaactg accctgcagg caacacttca ttgccaggta caggcacagt
      241 ttcagcagac atcacagcac ctgtggttgc gctggatgac gtgttgacga atgacagcac
      301 accagcactt actggtacag tgaacgaccc gacagcaact gtagttgtca atgtggatgg
      361 cgttgactat ccggcagtga acaatggtga cggcacctgg acgcttgcag acaatacact
      421 tcctgcgtta actgatggtc cacacaccat taccgtgact gcaacagatg cagcaggtaa
      481 cgtaggtaac gatactgcag tggtgaccat tgatacggtt gcaccaaatg caccggtgct
      541 tgatccgatc aatgcaacag acccagtgag cggtcaggca gagcctggtt caaccgtgac
      601 tgtgacttat cctgatggca caactgcaac agtggtagca ggcacagatg gcagctggtc
      661 agtaccaaac ccaggtaacc tggtggatgg cgatacagtg actgcaacag caactgaccc
      721 tgcaggcaac acttcattgc caggtacagg cacagtttca gcagacatca cagcacctgt
      781 ggttgcgctg gatgacgtgt tgacgaatga cagcacacca gcacttactg gtacagtgaa
      841 cgatccgaca gcaactgtag ttgtcaatgt ggatggcgtt gactatccgg cagtgaacaa
      901 tggtgacggc acctggacgc ttgcagacaa tacacttcca acactcgcag acggtccaca
      961 caccattacc gtgactgcaa cagatgcagc aggtaacgta ggtaacgata ctgcagtggt
     1021 gaccattgat acggttgcac caaatgcacc ggtgcttgat ccgatcaatg caacagaccc
     1081 agtgagcggt caggcagagc ctggttcaac cgtgactgtg acttatcctg atggcacaac
     1141 tgcaacagtg gtagcaggca cagatggcag ctggtcagta ccaaacccag gtaacctggt
     1201 ggatggcgat acagtgactg caacagcaac tgaccctgca ggcaacactt cattgccagg
     1261 tacaggcaca gtttcagcag acatcacagc acctgtggtt gcgctggatg acgtgttgac
     1321 gaatgacagc acaccagcac ttactggtac agtgaacgac ccgacagcaa ctgtagttgt
     1381 caatgtggat ggcgttgact atccggcagt gaacaatggt gacggcacct ggacgcttgc
     1441 agacaataca cttccaacac tcgcagacgg tccacacacc attaccgtga ctgcaacaga
     1501 tgcagcaggt aacgtaggta acgatactgc agtggtgacc attgatacgg ttgcaccaaa
     1561 tgcaccggtg cttgatccga tcaatgcaac agacccagtg agcggtcagg cagagcctgg
     1621 ttcaaccgtg actgtgactt atcctgatgg caccactgca acagtggtag caggcacaga
     1681 tggcagctgg tcagtaccaa acccaggtaa cctggtggat ggcgatacag tgactgcaac
     1741 agcaactgac cctgcaggca acacttcatt gccaggtaca ggcacagttt cagcagacat
     1801 cacagcacct gtggttgcgc tggatgacgt gttgacgaat gacagcacac cagcacttac
     1861 tggtacagtg aacgacccga cagccactgt agttgtcaat gtggatggcg ttgactatcc
     1921 ggcagtgaac aatggtgacg gcacctggac gcttgcagac aatacacttc caacactcgc
     1981 agacggtcca cacaccatta ccgtgactgc aacagatgca gcaggtaacg taggtaacga
     2041 tactgcagtg gtgaccattg ata
//
