LOCUS       NZ_CP121496             3230 bp    DNA     circular CON 11-APR-2024
DEFINITION  Staphylococcus epidermidis strain 24FSE04 plasmid unnamed1, complete
            sequence.
ACCESSION   NZ_CP121496
VERSION     NZ_CP121496.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33711672
            Assembly: GCF_029691875.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus epidermidis
  ORGANISM  Staphylococcus epidermidis
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 3230)
  AUTHORS   Pitton,M.
  TITLE     S. epidermidis isolates collected from patients with left
            ventricular assist device
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3230)
  AUTHORS   Pitton,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2023) Intensive Care Medicine, Inselspital, Bern
            University Hospital, Freiburgstrasse 18, Bern 3010, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 10-DEC-2021
            Assembly Method                   :: Flye v. 2.8.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 277x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029691875.1-RS_2024_04_11
            Annotation Date                   :: 04/11/2024 17:07:52
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,452
            CDSs (total)                      :: 2,368
            Genes (coding)                    :: 2,292
            CDSs (with protein)               :: 2,292
            Genes (RNA)                       :: 84
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 50 of 76
            Pseudo Genes (incomplete)         :: 30 of 76
            Pseudo Genes (internal stop)      :: 25 of 76
            Pseudo Genes (multiple problems)  :: 22 of 76
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP121496.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3230
                     /organism="Staphylococcus epidermidis"
                     /mol_type="genomic DNA"
                     /strain="24FSE04"
                     /isolation_source="Forehead"
                     /host="Homo sapiens"
                     /db_xref="taxon:1282"
                     /plasmid="unnamed1"
                     /geo_loc_name="Switzerland: Bern"
                     /lat_lon="46.9473 N 7.4247 E"
                     /collection_date="2020-10-06"
                     /collected_by="Inselspital"
     gene            1702..2238
                     /locus_tag="QA611_RS00005"
     CDS             1702..2238
                     /locus_tag="QA611_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001829875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_001829875.1"
                     /translation="MISNKLKSARLAKELTQSEVAKKLYVTRQTVSRWEQGKTLPNIYV
                     IQELSDLYDISLDELVVNTALENKEAKSMKNVNPFALFGAILFNVFLFSLIVIFFGGFL
                     LLSLFISLAMLFSPLILAIFVLTGVQEFNVIQLVMTVIFVVIGLLSIPLLKKVSVFLFK
                     FFKRYLKFNHKAIFY"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(2404..2973)
                     /locus_tag="QA611_RS00010"
     CDS             complement(2404..2973)
                     /locus_tag="QA611_RS00010"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_049418315.1"
                     /translation="MKKMLRISIFIIVVSIFIVFKYSYQIEGILEEYPNILKAFVALFT
                     LLTTVISLVIAYKSYDNSVKQQEKDKEEKNKQFEENSDRIINSLKSDLAKYTRKINVFR
                     LGYTNSDVEFSELAKELSIKSNLEEIEKLTSQVRSSKSTELAKMDEVNIVNLHTASDSA
                     LFLFDIYENTSRENDGFCCKLENHII"
                     /name="hypothetical protein"
ORIGIN
        1 attaaagaaa ggaggaagac ttatgagtac taagaaaaag attaaagtta ctttggcaat
       61 gattaatgtt cttttaactg cagtcgaact ttatcttcaa tggcaattga gtaaatctga
      121 aaatgaactg tagttaaaca agtaggtagg actaaaacgt ttctgtttta gtcctatttt
      181 ttctataaat ggttattatt catttgaaaa tggctcaaac atgtcgcata agatgaaaaa
      241 taaaatgatc atttaacgtt gttttaactt taaaaattat aaaaatacta accgttttta
      301 tattctttag caatctttct tagttataaa agtaacttaa taaaatcgtt tttgtcattt
      361 actttgttaa tgatcggaaa gaaaagattg attttatcat tccaaaaaat caaaattcag
      421 attcaattga tatacatcat aaacaaaaag taagtcgtta atgttcaaga cataagtcga
      481 atgtaatttt aaatttgatt ttttctatcc caaactgagt aaagatattt acttagtttt
      541 cttttttttt tatctccaat tattttacta acaatgctta ttttgaaaat aaaaataagc
      601 acttaaagta aaaagtgaac aagagaatag ccacttttgt cttaaagcac gttttgtttt
      661 tggaaatatt acaaatataa taggattttc aaatagtatt tgacatgagc ataaggaaat
      721 ccagtaccac ctttggtggt attcagcata gctgaaggat tgtcttaccg ttcgctttgc
      781 ttacttgctc tttgaaattc actacaagtg ttgatataac aacatttata gttaatatta
      841 aataaaaatt aatcgacatt ataaacctta atattgcata ctatttacaa ttgttacaag
      901 accactttaa attgtctgaa tactattgtt tttattgatt tcataggctt cagtcgtcgt
      961 caatcctata aataggattg atttttttat ccaaatccta ttaatcctat tacttttagt
     1021 attaatatca aaaataaaat cactcaaaag taatctaagt aattcattca tttgttttac
     1081 tttttgaaat tgactaaata ctttttgctc aatatcgtat tcaataatga tcttattatt
     1141 tatttttaag ttcaaaaaag aagggaaaga ataaaacaat ttctatactt ttctatgctc
     1201 gattttatta aaaagtgacc cgaaataaag atcactttat ctttttatta aatagaaaat
     1261 taaaaaaacg gaaaaatata taataagatt catcgaatga ttactcaaat ttttgtttgt
     1321 gaaatacatt tatatttatt tgattctcat ttgcgtttta agagctaact taaaatttca
     1381 gtagctctta ctcacttttt ggatgataaa agtgaaaata ataccaaaaa atcaagaaaa
     1441 gatattttaa ttataacgta gcatttatga cgaaaaaatt tattgttcgt tgagaagaac
     1501 tcttaactaa acttatagac gaatgtcggt atagcgtgag ctattaagcc gaccattcga
     1561 caattttagg gagcaattgt gataaagtat taatgtttta aacctgttac atcattgatt
     1621 tcgttgggat gtaacaggtt tgtttctttt aatttggatt tgttgtgaga ttataaattt
     1681 ataaaaaaca aggagaagct tatgatatcg aataaattaa aatctgcgag attagcaaag
     1741 gaattaacgc aatctgaggt agctaaaaaa ttatacgtta ctagacaaac tgtttctcga
     1801 tgggagcaag gtaaaacgtt gcctaatatt tatgtaattc aagaattaag cgatctttat
     1861 gatatttctt tagatgaatt agtagtaaat acagcattag aaaataagga ggctaaaagt
     1921 atgaaaaatg taaatccttt tgctttattt ggagcgatat tatttaatgt gtttttattt
     1981 tctttaatag ttatattttt tggtggcttt ttgttattat ctttattcat ttctttagct
     2041 atgttattta gtcctttgat tttagcaatc tttgttttaa cgggtgtaca agagtttaat
     2101 gtaattcaac tagttatgac tgttattttc gttgttattg gtttgttatc aattccttta
     2161 ttgaaaaaag tcagtgtatt tttatttaaa tttttcaaac gatatttgaa atttaatcat
     2221 aaagcaattt tttattgaat ttagaaacga gtttctttat aaaagtaagc aaagatataa
     2281 tataaaatga ggttctgttg caaagttaaa ttaatataca aagttatgca aaagcagtaa
     2341 attatatact attatatcaa cagattattc ggttggattt tattattttt catttctttg
     2401 tatctatatt atatgatttt caagtttgca acagaaccca tcattttccc ttgatgtatt
     2461 ttcataaata tcaaataaaa atagagctga atcacttgca gtatgtaaat tgactatatt
     2521 aacttcatcc attttagcaa gttcagtact tttgctactt ctcacttgtg atgtaagttt
     2581 ttctatttcc tctaaattac tttttataga aagttctttt gcaagttcag agaattcaac
     2641 atctgaattc gtatatccta atctaaaaac atttattttc ctagtatatt ttgctaaatc
     2701 agatttcaaa ctattaataa tcctatcgct attttcttcg aactgtttgt ttttttcttc
     2761 tttatctttt tcttgttgct taacgctatt atcatatgat ttatatgcga taacaagact
     2821 gataacagtt gtaaggagag tgaataatgc tacaaatgct tttaaaatat ttggatattc
     2881 ttctagaatt ccctcaattt gataagagta tttaaaaaca ataaatatgg agaccactat
     2941 tatgaaaatc gatatacgta acatcttctt cattctaaaa cttcctctct aagccatata
     3001 aaaatgttac tgactcacat tattatcaaa tgattcttat aatatataac atatatcagt
     3061 atagttatta aaacatcaat taaaaatgca tgttttataa atatcattaa ccctattcct
     3121 atttatatat actacagata taaataaaat aactccgtaa ttataatatt tacgctcaaa
     3181 ctttatgaac tttgcattcc taccaattat agtgttacaa tgtaattaac
//
