LOCUS       NZ_CP121490             3864 bp    DNA     circular CON 04-JUN-2024
DEFINITION  Staphylococcus epidermidis strain 24FSE03 plasmid unnamed1, complete
            sequence.
ACCESSION   NZ_CP121490
VERSION     NZ_CP121490.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33711673
KEYWORDS    RefSeq.
SOURCE      Staphylococcus epidermidis
  ORGANISM  Staphylococcus epidermidis
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 3864)
  AUTHORS   Pitton,M.
  TITLE     S. epidermidis isolates collected from patients with left
            ventricular assist device
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3864)
  AUTHORS   Pitton,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2023) Intensive Care Medicine, Inselspital, Bern
            University Hospital, Freiburgstrasse 18, Bern 3010, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 10-DEC-2021
            Assembly Method                   :: Flye v. 2.8.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 430x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029909305.1-RS_2024_06_04
            Annotation Date                   :: 06/04/2024 05:46:54
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7
            CDSs (total)                      :: 7
            Genes (coding)                    :: 6
            CDSs (with protein)               :: 6
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 1 of 1
            Pseudo Genes (incomplete)         :: 0 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP121490.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3864
                     /organism="Staphylococcus epidermidis"
                     /mol_type="genomic DNA"
                     /strain="24FSE03"
                     /isolation_source="Forehead"
                     /host="Homo sapiens"
                     /db_xref="taxon:1282"
                     /plasmid="unnamed1"
                     /geo_loc_name="Switzerland: Bern"
                     /lat_lon="46.9473 N 7.4247 E"
                     /collection_date="2020-10-06"
                     /collected_by="Inselspital"
     gene            53..1322
                     /gene="mobV"
                     /locus_tag="QA598_RS00005"
                     /pseudo=""
     CDS             53..1322
                     /gene="mobV"
                     /locus_tag="QA598_RS00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000331753.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /name="mobV"
     gene            1556..2173
                     /locus_tag="QA598_RS00010"
     CDS             1556..2173
                     /locus_tag="QA598_RS00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017465246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CadD family cadmium resistance transporter"
                     /protein_id="WP_049394661.1"
                     /translation="MIQTIVTAAILYIATAVDLLVILLIFFARAKTKKEYRDIYIGQYV
                     GSVALIVVSLFFAFVLNYVPEKWILGLLGLIPIYLGIKVAIYDDCEGEKRAKKELNEKG
                     LSKLVGTVAIVTIASCGADNIGLFVPYFVTLSVTNLLITLFVFLILIFFLVFTAQKLSN
                     IPGVGEIVEKFSRWIMAVIYIALGLFIIIENDTIQTILGFIF"
                     /name="CadD family cadmium resistance transporter"
     gene            2192..2539
                     /locus_tag="QA598_RS00015"
     CDS             2192..2539
                     /locus_tag="QA598_RS00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020366422.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003700 - DNA-binding transcription factor activity
                     [Evidence IEA]"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="WP_002441960.1"
                     /translation="MSYENACDVICVHEDKVNNALSFLEDDKSKKLLNILEKICDEKKL
                     KIILSLIKEDELCVCDISLILKISVASTSHHLRLLYKNDVLDFYKKGKMAYYFIKDDEI
                     KEFFSKNQEGF"
                     /name="metalloregulator ArsR/SmtB family transcription
                     factor"
     gene            2708..2809
                     /locus_tag="QA598_RS00020"
     CDS             2708..2809
                     /locus_tag="QA598_RS00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000228874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Fst family toxin"
                     /protein_id="WP_000228874.1"
                     /translation="MVEALVHITTTVISGCIVALFTHWLRTRNNKKK"
                     /name="type I toxin-antitoxin system Fst family toxin"
     gene            3146..3412
                     /locus_tag="QA598_RS00025"
     CDS             3146..3412
                     /locus_tag="QA598_RS00025"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_201454748.1"
                     /translation="MQTVSLVIKKIKDAKMAKYWKENQEGLLNDGEALTILMMLYNEHP
                     YVVQLPCLNKQLQDDNRYAQPTYTIYSTTKNRKENKRRIKNSI"
                     /name="hypothetical protein"
     gene            complement(3535..3684)
                     /locus_tag="QA598_RS00030"
     CDS             complement(3535..3684)
                     /locus_tag="QA598_RS00030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019469204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin"
                     /protein_id="WP_002504104.1"
                     /translation="MKTLNEKQLKDINGGKGIVGEVTGEVTSIGNAISNGWHDLKQSVA
                     DTTK"
                     /name="bacteriocin"
     gene            complement(3705..3848)
                     /locus_tag="QA598_RS00035"
     CDS             complement(3705..3848)
                     /locus_tag="QA598_RS00035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019469205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_002504103.1"
                     /translation="METLNEKQLKDINGGRETGCSGDFVEDGIMCNIGQGIGKAINKVR
                     GK"
                     /name="hypothetical protein"
     Typing          3..778
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="94.208"
                     /coverage="99.0"
                     /evalue="1.0800000000000001e-165"
ORIGIN
        1 tactttaata aataaagcta cgcaaaaaca tgtgcagtgg aggaatttta atatggcgta
       61 ttctattatc agagttgcta aagtgaaatc aaaaacgaat acaaaaggca ttcaaaaaca
      121 tgtacaaaga caaaataaaa attatgaaaa tatggatatt gatttagaaa aatcatactt
      181 aaattacgat ttagtcaatg atagtccgat tgattataat caaaaaatcg aagagaaaat
      241 tgaacaaaat tataatggga aacgcaaaat tagaaaagac gcagtaaaac atattgatgg
      301 tttaattaca tctggtaatg aattttttaa aaatcaaaca cttgaagaaa caaagcagtt
      361 ttttgaacat gctaaaacgt ttttagaaca agagtatgga aaagataatt tattatatgc
      421 aacagtgcat atggacgaaa aaacacctca tatgcattat ggggtagttc cgattacaga
      481 agatggtcga ttgagtgcga aagaggtttt aggtaataaa aaggcactaa ctgaatttca
      541 agatagattt aacgaacata tcaatagttg tggttatgac ttgagtagag gtataacaag
      601 gggcgttaca ccgagacgac atgagcagat aagtcgttat aaaaatttaa cagattatca
      661 caaagaagaa tatgagcatg agagccgaaa attagaccgt ataaagcaag aaagcgaaga
      721 agtaatggaa caagtatcaa aatgctttag atgttctaaa aaagcctata aatgtcccat
      781 atgagcttga aactgaaaaa gttggtggac tgttcaacaa agaaacacag gaaacaggta
      841 acgtcgttat tgataaaaat gaatttgatt tattgcagga acaagtaaaa gcttctcaac
      901 tcattactga tgattatgaa tatattaaaa gcggaaaagc tttaaaagat tttgaggaaa
      961 aaaacaaaag attagaagat agattattag acgaacagat taaaaatgga aaagtaatag
     1021 atgaatacaa tgatttagcg gatagttata ataatttatt ggaacaaaat caagaaaaag
     1081 aaaaagagtt aaaccgttcg tataaactat ttaacaatgt gtttaagttg attaaaggtg
     1141 tgatgaaaga agaaacatat cattcgttga ttaaccatat tgataatcac ttagaaagct
     1201 caaaaatgcg agaaacaatg attgtagatg ataacgatga acaattcttt aagaaaaaat
     1261 atcaaaggca tgaaccagaa attatttttg aagatgaacg agatgatggc tacactttat
     1321 aaagacgacg catttatgcc gagaaaattt attgtgcgtt gagaagaacc cttaactaaa
     1381 cttgcagacg aatgtcggca tagcgtgagc tattaagccg accattcgac aagttttggg
     1441 attgttaagg gttccgaggc tcaacgtcaa taaagcaatt ggaataaagc atctatgatt
     1501 atttgaaaac ataagttata atacattcaa aaatattttt gaatgaggtg taattatgat
     1561 tcagactatt gtaactgctg ctattcttta tattgcgaca gcagtagatt tattagtgat
     1621 tttattaata ttttttgcta gagcaaagac taagaaagaa tatcgagata tttatattgg
     1681 tcaatatgta ggatctgtgg cattgattgt cgtaagttta ttctttgcct ttgtcttaaa
     1741 ttatgttcct gaaaaatgga tattaggatt attagggtta ataccgattt atttaggaat
     1801 taaagtagct atttatgatg attgtgaagg agaaaagaga gctaaaaaag aattgaatga
     1861 aaaaggattg tctaaattag ttggtacggt tgcaattgtt acgatagcaa gttgtggtgc
     1921 tgataatatt ggtttatttg ttccgtattt tgtgacatta agtgttacta atttattaat
     1981 tactctgttt gtctttttaa ttttaatttt cttcttggta tttactgcac aaaaattatc
     2041 taatattcca ggagttggag aaattgttga gaaatttagt cgttggatta tggctgttat
     2101 ttatatagct ttaggtttat ttattattat tgaaaatgat actattcaaa caattttagg
     2161 atttatattt taatttaggg tgcgatttta tatgagttat gaaaatgctt gtgatgtgat
     2221 ctgtgtacat gaggataaag ttaacaatgc tttaagtttt ttagaagatg ataaatctaa
     2281 gaaattactt aacattttag aaaaaatttg tgatgagaag aaattgaaaa tcatattatc
     2341 tttgattaaa gaagatgagt tgtgtgtttg tgatatttct ttgatattga aaataagtgt
     2401 tgcttcaact tcacatcatt taagactttt atataaaaat gatgtacttg atttttataa
     2461 aaagggaaag atggcatatt attttattaa agacgatgaa ataaaagaat ttttctctaa
     2521 aaatcaggag ggtttttgaa acgagtgaaa cgagtttctt cttgtcttga tactataaaa
     2581 aagcaaagat ataacataaa atgacttatc ggaagttatc tattatccct tattcagaga
     2641 tgatataata tacaggtcgc ctatctctca ggcgtcaatt tagacgcaga gaggaggtgc
     2701 atatcagatg gtcgaagctc ttgttcacat cacgaccaca gtcatcagtg gttgtattgt
     2761 tgcgttattt acgcattggc tacgtacacg taacaataag aaaaaatagg cgatattagc
     2821 caacacctaa aaatcccctc actattgcga gtagtgaggg gattggtgca tataatgtac
     2881 gaagctcttg ttgtctaaat tataacactg gttagtagaa gaatgcaaaa cacttatatt
     2941 aaaaaatggg tatctttgag tagtatcata agttatagta tagaaatatt taagtgtttg
     3001 tattcagaat ttagttttcc gttaaatgat gtattgctag aaggtactga taaaaaagcg
     3061 agtaaagaat atataaacaa gaatcaaaaa actttttatt gtctataatc atctattact
     3121 ttctttttac tagtaacttc gataattgca aacagtatca ttggttatta aaaaaataaa
     3181 agatgcaaaa atggctaaat attggaaaga aaatcaagag ggattattaa atgatgggga
     3241 agcattaact atattaatga tgttatataa tgagcatcca tatgtagtac aattaccgtg
     3301 tttaaataag caactacaag atgacaacag atacgctcaa cccacgtata ctatatattc
     3361 tacaaccaaa aacagaaaag agaataaaag aagaataaaa aatagcatat aaccttaata
     3421 agataattaa ttttgttata ttaaaataat atatagataa tttaattatt taaagtcgaa
     3481 caattaaaaa agtctgggtt attacccaga cttttttaat ttaaataatg agtcctattt
     3541 tgtagtatca gcgacagact gttttaaatc atgccaacca tttgaaatgg cattaccaat
     3601 actagtgact tcgccagtga cttcaccaac aatcccttta ccaccattga tatcttttaa
     3661 ttgtttttca tttagtgttt tcattgaaat agtcctcctt taaattattt tcctcgtact
     3721 ttattaattg ctttaccaat accttgtccg atattgcaca ttattccatc ttctacaaaa
     3781 tcaccagaac aaccagtttc acgaccacca ttgatatctt ttaattgttt ttcatttagt
     3841 gtttccattg aaatagtcct cctt
//
