LOCUS       NZ_CP121206             2461 bp    DNA     circular CON 27-MAY-2024
DEFINITION  Staphylococcus aureus strain SA0907 plasmid pSA0907-2, complete
            sequence.
ACCESSION   NZ_CP121206
VERSION     NZ_CP121206.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33961605
            Assembly: GCF_029625375.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2461)
  AUTHORS   Kong,W., Liao,Y., Zhang,Q., Li,X. and Huang,F.
  TITLE     Whole-Genome Analysis of Methicillin-Resistant Staphylococcus aureus
            Sequence Type 45 Strain SA0907
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2461)
  AUTHORS   Kong,W., Liao,Y., Zhang,Q., Li,X. and Huang,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2023) Zhuhai Hospital, Jinan University, 79
            Kangning Road, Zhuhai, Guangdong 519000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Hifiasm v. 0.13-r308; Canu v. 1.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 127.18x
            Sequencing Technology             :: Illumina NovaSeq; PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029625375.1-RS_2024_05_27
            Annotation Date                   :: 05/27/2024 04:54:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,999
            CDSs (total)                      :: 2,916
            Genes (coding)                    :: 2,815
            CDSs (with protein)               :: 2,815
            Genes (RNA)                       :: 83
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 101
            CDSs (without protein)            :: 101
            Pseudo Genes (ambiguous residues) :: 0 of 101
            Pseudo Genes (frameshifted)       :: 49 of 101
            Pseudo Genes (incomplete)         :: 44 of 101
            Pseudo Genes (internal stop)      :: 18 of 101
            Pseudo Genes (multiple problems)  :: 10 of 101
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP121206.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2461
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="SA0907"
                     /isolation_source="eccrine"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /plasmid="pSA0907-2"
                     /geo_loc_name="China: Zhuhai"
                     /lat_lon="22.28 N 113.58 E"
                     /collection_date="2022-09"
                     /collected_by="Qinghuan Zhang"
     gene            complement(join(2312..2461,1..585))
                     /gene="erm(C)"
                     /locus_tag="P7F77_RS14980"
                     /old_locus_tag="P7F77_14985"
     CDS             complement(join(2312..2461,1..585))
                     /gene="erm(C)"
                     /locus_tag="P7F77_RS14980"
                     /old_locus_tag="P7F77_14985"
                     /EC_number="2.1.1.184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011282421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2058)-N(6))-methyltransferase
                     Erm(C)"
                     /protein_id="WP_001003263.1"
                     /translation="MNEKNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFT
                     LELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIFGNIPY
                     NISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLALFLMAEVDISILSMVPREYF
                     HPKPKVNSSLIRLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGID
                     DLNNISFEQFLSLFNSYKLFNK"
                     /name="erm(C)"
     gene            complement(1388..1864)
                     /locus_tag="P7F77_RS14985"
                     /old_locus_tag="P7F77_14990"
     CDS             complement(1388..1864)
                     /locus_tag="P7F77_RS14985"
                     /old_locus_tag="P7F77_14990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000664727.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_000664727.1"
                     /translation="MKERYGTVYKGSQRLIDEESGEVIEVDKLYRKQTSGNFVKAYIVQ
                     LISMLDMIGGKKLKIVNYILDNVHLSNNTMIATTREIAKATGTSLQTVITTLKILEEGN
                     IIKRKTGVLMLNPELLMRGDDQKQKYLLLEFGNFEQEANEKQENALSDYYSFKD"
                     /name="replication/maintenance protein RepL"
     ARG             complement(2313..2461)
                     /name="ErmC"
                     /gene="ErmC"
                     /gene_name="Erm 23S ribosomal RNA methyltransferase"
                     /tool="rgi"
                     /drug_class="macrolide antibiotic; lincosamide antibiotic;
                     streptogramin antibiotic; streptogramin A antibiotic;
                     streptogramin B antibiotic"
                     /identity="100.0"
                     /coverage="20.08"
     ARG             complement(2..585)
                     /name="ErmC"
                     /gene="ErmC"
                     /gene_name="Erm 23S ribosomal RNA methyltransferase"
                     /tool="rgi"
                     /drug_class="macrolide antibiotic; lincosamide antibiotic;
                     streptogramin antibiotic; streptogramin A antibiotic;
                     streptogramin B antibiotic"
                     /identity="99.49"
                     /coverage="79.92"
     Typing          complement(1379..1864)
                     /name="rep_cluster_1947"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.591"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aacgaaataa ttatacttct gtttatcttt gtgtgatatt cttgattttt ttctatttaa
       61 tctgataagt gagctattca ctttaggttt aggatgaaaa tattctcttg gaaccatact
      121 taatatagaa atatcaactt ctgccattaa aaataatgcc aatgagcgtt ttgtatttaa
      181 taatctttta gcaaacccgt attccacgat taaataaatc tcatcagcta tactatcaaa
      241 aacaattttg cgtattatat ccgtacttat gttataaggt atattaccaa atattttata
      301 ggattggttt ttaggaaatt taaactgcaa tatatccttg tttaaaactt ggaaattatc
      361 gtgatcaaca agtttatttt ctgtagtttt gcataattta tggtctattt caatggcagt
      421 tacgaaatta cacctctgta ctaattcaag ggtaaaatgc ccttttcctg agccgatttc
      481 aaagatatta tcatgttcat ttaatcttat atttgtcatt attttatcta tattatgttt
      541 tgaagtaata aagttttgac tgtgttttat atttttctcg ttcattataa ccctctttaa
      601 tttggttata atgaattttg cttattaacg attcattata accacttatt ttttgtttgg
      661 ttggctgatt acaaaaatac taaaaatgcc catatttttt cctccttata aaattagtat
      721 aattatagca cgagctctga taaatatgaa catgatgagt gatcgttaaa tttatactgc
      781 aatctgatgc gattattgaa taaaagatat gagagattta tctagtttct ttttttacaa
      841 gaaaaaagaa agttcttaaa ggttttatac ttttggtcgt agagcacacg gtttaacgac
      901 ttaattacga agtaaataag tctagtgtgt tagactttaa tgttttttta aggcattagt
      961 gcatttaagc gtcagagcat ggctttatgc cgagaaaact attggttgga atggcgtgtg
     1021 tgttagccaa agctttggcg agttggttgg gggtttcatg ggattaatcc catgaaagta
     1081 ccaactcaac aacacactaa cgcctgttgg ttccaaccaa taggaaattg gaataagcaa
     1141 ttagtataat gagagtataa tgttggtata acgttagtat aatgatgctt tttttcatta
     1201 tattttttat gtactttaaa cctgcacgct tatgtgaatt agaaaaagct taatcgcatt
     1261 tcatagattg acctcccaat aactacgtgg tgttattggg aggtcaatct atttcatttg
     1321 cgttaagctt ttgatctaca ttaagcgtgc aggttttttg tctatttgta gacgatttta
     1381 tgttatacta gtccttgaaa gaataataat cagataatgc attttcttgt ttttcatttg
     1441 cctcttgctc aaagttccca aattcgagta agaggtattt ttgtttttgg tcgtcgcctc
     1501 tcattagtag ttcagggttt aacattaata ctccagtttt tctttttata atatttcctt
     1561 cttctaagat tttaagtgtt gttattactg tttgtagact tgttcctgta gcttttgcta
     1621 tttctcttgt tgtagctatc attgtattgt tacttaagtg gacattatct aggatatagt
     1681 taacgatttt aagttttttt ccgccaatca tatctaacat acttattaat tgcactatat
     1741 atgcctttac gaagttacca gacgtttgtt tacggtataa cttgtctacc tctatgactt
     1801 ctccactttc ttcgtctatg agcctctgag agcctttata gactgttcca tatctttctt
     1861 tcatcttttt ctcactcctt attttaaact attctaacta tatcataact gttctaaaaa
     1921 aaaaagaaca tttgttaaaa gaaattagaa caaaatgagt gaaaaattag aacaaacaaa
     1981 ttccttataa accttatcat ctcaacctat attaagattt tacctagttg aatcttcttt
     2041 tctatataaa gcgtcggagc atatcagggg gttatctaac gtaaatgcta cccttcggct
     2101 cgctttcgct cggcattgac gtcagatact gcaccccctg aacccccatg ctccaacagc
     2161 aaaaaggaaa ctttttgctg cttttccgac gcttattcgc ttcgctcata tttatataga
     2221 aaagaagtga atgcgcaaaa gacataatcg attcacaaaa aataggtaca cgaaaaacaa
     2281 gttaagggat gcagtttatg catcccttaa cttacttatt aaataattta tagctattga
     2341 aaagagataa gaattgttca aagctaatat tgtttaaatc gtcaattcct gcatgtttta
     2401 aggaattgtt aaattgattt tttgtaaata ttttcttgta ttctttgtta acccatttca
     2461 t
//
