LOCUS       NZ_CP121205             3011 bp    DNA     circular CON 27-MAY-2024
DEFINITION  Staphylococcus aureus strain SA0907 plasmid pSA0907-1, complete
            sequence.
ACCESSION   NZ_CP121205
VERSION     NZ_CP121205.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33961605
            Assembly: GCF_029625375.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 3011)
  AUTHORS   Kong,W., Liao,Y., Zhang,Q., Li,X. and Huang,F.
  TITLE     Whole-Genome Analysis of Methicillin-Resistant Staphylococcus aureus
            Sequence Type 45 Strain SA0907
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3011)
  AUTHORS   Kong,W., Liao,Y., Zhang,Q., Li,X. and Huang,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2023) Zhuhai Hospital, Jinan University, 79
            Kangning Road, Zhuhai, Guangdong 519000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Hifiasm v. 0.13-r308; Canu v. 1.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 127.18x
            Sequencing Technology             :: Illumina NovaSeq; PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029625375.1-RS_2024_05_27
            Annotation Date                   :: 05/27/2024 04:54:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,999
            CDSs (total)                      :: 2,916
            Genes (coding)                    :: 2,815
            CDSs (with protein)               :: 2,815
            Genes (RNA)                       :: 83
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 101
            CDSs (without protein)            :: 101
            Pseudo Genes (ambiguous residues) :: 0 of 101
            Pseudo Genes (frameshifted)       :: 49 of 101
            Pseudo Genes (incomplete)         :: 44 of 101
            Pseudo Genes (internal stop)      :: 18 of 101
            Pseudo Genes (multiple problems)  :: 10 of 101
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP121205.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3011
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="SA0907"
                     /isolation_source="eccrine"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /plasmid="pSA0907-1"
                     /geo_loc_name="China: Zhuhai"
                     /lat_lon="22.28 N 113.58 E"
                     /collection_date="2022-09"
                     /collected_by="Qinghuan Zhang"
     gene            127..1122
                     /locus_tag="P7F77_RS14970"
                     /old_locus_tag="P7F77_14975"
     CDS             127..1122
                     /locus_tag="P7F77_RS14970"
                     /old_locus_tag="P7F77_14975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001199895.1"
                     /translation="MQYNTTRSITENQDNKTLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAYNVKQCGNVLEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQKVI
                     EEVIKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTKAFDRLSRYKKVKQNLVGFMRST
                     EVTVNKNDGSYNQHMHVLLCVENAYFRKKENYITQEEWVNLWQKALQVDYRPVANIKAI
                     KPNQKGDKDIESAIKETSKYSVKSSDFLTDNDEKNQEIVSDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDAEDGNLINTSDEDKITDEEAKAHSITAIWNFEKQNYYLRH"
                     /name="protein rep"
     gene            complement(2105..2686)
                     /locus_tag="P7F77_RS14975"
                     /old_locus_tag="P7F77_14980"
     CDS             complement(2105..2686)
                     /locus_tag="P7F77_RS14975"
                     /old_locus_tag="P7F77_14980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000991701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000991701.1"
                     /translation="MNAIQKSVSLRKVLVISLSFLTILSMVLNFNFKEAQAQNKNNIAD
                     KNIETLNEKEIEKELDYIYGKIIVLDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDIEN
                     KKKNSSISPRAVGGNYKNSNDCFYSEVLNSYGELLTGNIIAAVFDDVKAKNIKSAAKKL
                     ARIGIKGNLAGIAATMVSKDVQCTLKYGWF"
                     /name="hypothetical protein"
     Typing          1193..1357
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="99.398"
                     /coverage="100.0"
                     /evalue="1.13e-79"
     Typing          128..1122
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.687"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 agctgtaact gttgatatta cagcgtttaa acgtgttttt gtgcgtgaaa ggaaaatttg
       61 acaataaaaa accccagtta tattattaag gtgtcgaatc ttaaataata ctgggggtct
      121 ttttatatgc aatataatac tactagaagt ataaccgaaa atcaagataa taaaacgtta
      181 aaagatatga cgaaaagtgg gaaacaacgc ccatggagag aaaagaaaat agataatgta
      241 agctatgcag atatacttga aattttaaaa ataaaaaagg cttataacgt aaaacaatgt
      301 ggtaacgtct tagaattcaa gccgaccgat gaaggttatt tgaaattaca taagacgtgg
      361 ttttgtaaat caaagctatg tccagtttgt aattggaggc gtgctatgaa aaatagttat
      421 caagctcaaa aagtgattga agaagtaatt aaggaaaagc caaaagcacg ttggttgttt
      481 ttaacacttt caaccaaaaa tgcgatagat ggagatactt tagaacaaag tttgaagcat
      541 ctaactaaag catttgatag gttgagtaga tataaaaagg ttaaacaaaa tcttgttgga
      601 tttatgcgtt caacagaagt taccgttaat aaaaatgatg gtagttataa tcagcatatg
      661 cacgttttgt tatgtgttga aaatgcatat tttagaaaaa aagagaatta tataactcaa
      721 gaagaatggg ttaatttatg gcaaaaagca ttacaagttg attatcgacc tgttgcaaat
      781 attaaagcaa ttaaacctaa tcaaaaaggc gataaagata ttgaatcggc aatcaaagag
      841 acatcaaaat attcggttaa gtcatctgat tttttaactg acaatgacga aaaaaatcaa
      901 gaaattgtaa gtgatttaga aaaaggttta tatcgaaaac gtatgttaag ttatggtgga
      961 ttgcttaaac aaaagcataa aattttaaac ttagacgatg ctgaagatgg taatttaatt
     1021 aatacaagtg atgaagataa aataacagat gaagaagcaa aagcacattc aattacggca
     1081 atttggaatt ttgaaaaaca aaattattat ttaagacatt agtgatgact gatgtctttt
     1141 ttattgattt tttgtaaaaa agtactgtct tatttttgtg acaaatgctg tatgtagtgt
     1201 cacaaaactg tgacaaacgc aatatattgt gtcacaaaag tgtgacacta cagcttttta
     1261 tgatatcact ttaaaattac ttaaaaccct tggaatgtct ggctttgcca gacctatcat
     1321 ttttgaatga tagcaaattc tccttatgct cttacggagt tcttagagaa aaattaaaaa
     1381 ttctcgattt ttgataaaaa gcgccctgca ggaatttaga aaaacatggg ggaagtttta
     1441 aaggatttta tgctaatttt taatttgcat gtaaatgggc agtgtccgaa aaatcgacac
     1501 tgggtttgat cgaatttttg attataaaaa atttttgatt ataaaatcag aatatattta
     1561 tttggctcat atttgcgttt taagaaacaa ataagataat acaggtataa aactatatat
     1621 ttttaaagtt cgttctaaat acccccttaa aatgcaaaat aagtatattc gattattaca
     1681 cgtaaatttt ggttttagct cgacgcattt ttaagtatgt aaatgcgcct cttggataac
     1741 gaaaaataaa aaatcttaat taaacagagt ttaactaaga tagtcacgaa ttttattagg
     1801 tttaaaaatt atgattactt cagatgttta gaattaaggt gttgattata gtgtgaatga
     1861 aagcaaggga taataattag taaatcagtg cacaattaat gttttattta agggatagtt
     1921 acacgcataa tcaaacatgc atttatgccg agaaaattta ttgatgttga gaagaaccct
     1981 taactaaact tgaagacgaa tgtcggcata gcgtgagcta ttaagccgac gattcgacaa
     2041 gtttagggat tgttaagggt tccgaggctc aacgtcaata aagcaattgg aataaattat
     2101 atatttagaa ccatccgtat ttcagagtac attgtacatc ctttgaaacc atagtagctg
     2161 caattccagc taaatttcct tttatgccaa ttctggctaa tttttttgct gcactcttta
     2221 tgtttttggc ttttacatca tcaaaaactg ctgcgattat attaccggtt aaaagttctc
     2281 catatgagtt taaaacttca gaatagaaac agtcattact atttttgtag tttccaccaa
     2341 ctgctctagg tgatattgag ctatttttct ttttattctc tatgtcgttc tttagttttt
     2401 ggaaaccttc aggaacatat ccatatctag atttggcatt ttctagatta acatctttag
     2461 cggttccgtc tttatctaaa acaataattt tgccatatat gtagtctagt tctttttcga
     2521 tttctttttc gtttaaagtt tcaatgtttt tatctgcgat gttgtttttg ttttgggctt
     2581 gagcttcttt aaaattaaaa ttcaagacca ttgaaagtat agttaaaaaa cttaaagata
     2641 ttactaaaac ttttcttagt gatacacttt tttgaattgc attcattata aatgccccct
     2701 tgttttgtta tttaaatgaa tccaatataa tattaacata taaaaacaaa ggagtttaat
     2761 atgaataagt ttatttattt tttaattgtt ttattgtccg tatttttaat atttaatttt
     2821 gttaattcga ttttatttaa taatcctttt gactttttag aaagctttat ttattcgttg
     2881 gttttcacat tgatttattt aggtttagag ggctataaag agaaaaagaa atagattgtt
     2941 tttgaaacga gttgaaaacg agtttcttct tgtcttgata ctatatagaa ataactcgat
     3001 tttatatata t
//
