LOCUS       NZ_CP120981             2683 bp    DNA     circular CON 04-APR-2024
DEFINITION  Moellerella wisconsensis strain XJ22MSE3 plasmid pXJ22MSE3-3,
            complete sequence.
ACCESSION   NZ_CP120981
VERSION     NZ_CP120981.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33921809
            Assembly: GCF_029590415.1
KEYWORDS    RefSeq.
SOURCE      Moellerella wisconsensis
  ORGANISM  Moellerella wisconsensis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Moellerella.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Wang,J.
  TITLE     Complete sequence of XJ22MSE3
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2683)
  AUTHORS   Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2023) Key Laboratory of Prevention and Control of
            Biological Hazard Factors (Animal Origin) for Agrifood Safety and
            Quality, Ministry of Agriculture of China, Yangzhou University,
            No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.3.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029590415.1-RS_2024_04_04
            Annotation Date                   :: 04/04/2024 07:25:13
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,544
            CDSs (total)                      :: 3,437
            Genes (coding)                    :: 3,349
            CDSs (with protein)               :: 3,349
            Genes (RNA)                       :: 107
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 31 of 88
            Pseudo Genes (incomplete)         :: 68 of 88
            Pseudo Genes (internal stop)      :: 30 of 88
            Pseudo Genes (multiple problems)  :: 31 of 88
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP120981.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Moellerella wisconsensis"
                     /mol_type="genomic DNA"
                     /strain="XJ22MSE3"
                     /isolation_source="mutton"
                     /db_xref="taxon:158849"
                     /plasmid="pXJ22MSE3-3"
                     /geo_loc_name="China: Xinjiang Province, Urumqi"
                     /lat_lon="43.45 N 87.37 E"
                     /collection_date="2022-07"
                     /collected_by="Wang Jing"
     gene            complement(join(2265..2683,1..22))
                     /locus_tag="P8A17_RS17720"
     CDS             complement(join(2265..2683,1..22))
                     /locus_tag="P8A17_RS17720"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015063446.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     gene            complement(660..1304)
                     /locus_tag="P8A17_RS17725"
     CDS             complement(660..1304)
                     /locus_tag="P8A17_RS17725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     ARG             complement(664..1304)
                     /name="qnrD1"
                     /gene="qnrD1"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrD1"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          complement(1399..1554)
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 ccaaacgaaa taattgagac atagagacac cctccgatca tgtgtgaacg gagacagtat
       61 aaggctttcg agaaattccg cttcctcgac gtgaaacaag ttcacgcctt gcggcgagcg
      121 ttgcgaattg aatttatgag gtttaccaag ctccagatgt aacaaagccc cgtgacagca
      181 tcacagggct ctggtactct aaatcttgtg cattcgttgc tcagattaga cgtcgcaatc
      241 caatcttagc aacgtgagag gcgcttgtca cgttctcatt aaataccagc caacgacatt
      301 aacccaaatg caccacttga ttgactcgga cttagcccgg tctccgaaag gataaacagg
      361 caaattgtgg tagtaaaacg taccggaaaa cgaaattccg gctctacctc cgaatcacgc
      421 tgcggtatcg aaagattaca gtgcgtacct gataagagca ccaatcaacg gactagggat
      481 ttcttggatt gcgaagtgtc gaaagaagcc caacctaacc aaacttagcc agattaacga
      541 gctaagagac catgacccaa taactgatca tggagaaaag caaagacaag atgaagatgt
      601 cgcttcgctc cgttttgatt agtaccacat tggggcatta ggcgtttttt acctagattt
      661 tatcggtgaa caataacacc taaactctca acaagctgaa gcgcctgctc tccatccaac
      721 ttcactccat ctaaattaat tcgccttgca tcaagctcgc caagcgcccc acccgttaaa
      781 tcacaaccag taaaatcagc caaagaccaa tcaaacgatg aaaactcccc acaagaaaga
      841 tcggagccac gaaacacggc gccagttatc acagtgccat tccagcgatt ttcccacagt
      901 tcgcactttt ctaatatgac tctagaaaaa ttagcgtaac taagatttgt cttggttata
      961 taagcactac aaaaccatga ccttgtagtt atcatattca taaaattagc ccctcgaaaa
     1021 tcagctcctt gagctaaaca ctcactaatt tcaagaccta aggcgctaat gtttttaaaa
     1081 ttactcattg ataaatcgca gcttttaaag ctagcgtttt ttagtttggc tctattaaaa
     1141 tcacaccctt ccaagctatt cctgtcgtaa aaactacaat caacaaattc agtatcagtt
     1201 aaatcaaccc ctgaaaaatc acaatttgaa aaggcaatat ttttaactct attccccgta
     1261 aattgatctc gtgaaaactt ttcattgata aagtgctttt ccatacatgc tacacctggt
     1321 tatttataca gtgcaatcat tgtacattaa tttgaacaac cttaaactct agctaaaatt
     1381 gattcataca atccctttta tgttaaacgg gcgagttagt tagcaaaaac ctcccgttca
     1441 tccccattaa agcccctcga aacgatttta agacacgatc accctataaa acacccaaat
     1501 ctacgctgaa agtttagaac ggttttgcgg gcttctgagt gcgtttttaa catcgtgcaa
     1561 actgacaagt aaaacgatgc gaaatcgctg aaagtcacaa acttgttttg tggcaagaag
     1621 cgatttgacc aaccgagtaa aacgagggcg gtaggctttt tgtttttatc ctgatgagcg
     1681 tccagcgaag aaagggaaaa acagggggag ccgaaacgaa atgacacgcc ccagcgatgg
     1741 caagtgaacc ccagtgaacg tgtttcgttt tgggggcaaa gccccccgtc aagcgaagcg
     1801 tctgaccacc acatttttga gcgaccaaat acaggggcga aaaaaggggg tggtcagacg
     1861 aacgcagtga gtttgacggg cttgggtgaa tggttttttt cgcaggcgtc cagccgaaga
     1921 aaatagccag agggcggagc cttatgtcat tcattttcgt ccagaaaatg agtggcattg
     1981 atactgaaag tatcatgggg tgcaagttag taaaactatg attctaccca ttatttcacc
     2041 cgttattctg cccgttatac ctaaattggg tgcaataacg ggtaaagtaa taggtagaat
     2101 aacaggtgga ttaatgggta agaaataaca caacgtcatc ttgtgtctat ctattattct
     2161 gtatcttatt ctatgtatta ttctacctat tacagacgaa atagataaaa taagagatag
     2221 aataatagat aggataatac ataaaataat aggtaaacct aacgtcagcg caccttttct
     2281 tcgagctgtt ttagcatcga aatatcacct aataaccgtt gatttttacc tgtgaaaaag
     2341 atgatcggac tgacatttgc attatcaata cttcggctta actgaattcc catcgcctga
     2401 taatcatcat cgtttgtgca atggtataac gctaaaacaa gctgacattg ttctggagtt
     2461 ccgcattcta ttgcccagcg gatcaactcc gaaaaggtca atccgttcgg tttccagtgt
     2521 tttttatgcc gtgacgctaa cgccttaaat ttttcacgcc cttgattata tttttctgcc
     2581 ccgatcaccg gatcttcaca acgaacccct tgaaccggtc gcttatcaaa tgacaattcc
     2641 cataaattta attcttcgat gtattcgtaa tcttctggcg atg
//
