LOCUS       NZ_CP120977             2683 bp    DNA     circular CON 04-APR-2024
DEFINITION  Moellerella wisconsensis strain XJ22MSE2 plasmid pXJ22MSE2-3,
            complete sequence.
ACCESSION   NZ_CP120977
VERSION     NZ_CP120977.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33921805
            Assembly: GCF_029590435.1
KEYWORDS    RefSeq.
SOURCE      Moellerella wisconsensis
  ORGANISM  Moellerella wisconsensis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Moellerella.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Wang,J.
  TITLE     Complete sequence of XJ22MSE2
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2683)
  AUTHORS   Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2023) Key Laboratory of Prevention and Control of
            Biological Hazard Factors (Animal Origin) for Agrifood Safety and
            Quality, Ministry of Agriculture of China, Yangzhou University,
            No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.3.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029590435.1-RS_2024_04_04
            Annotation Date                   :: 04/04/2024 07:18:16
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,545
            CDSs (total)                      :: 3,438
            Genes (coding)                    :: 3,350
            CDSs (with protein)               :: 3,350
            Genes (RNA)                       :: 107
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 31 of 88
            Pseudo Genes (incomplete)         :: 68 of 88
            Pseudo Genes (internal stop)      :: 30 of 88
            Pseudo Genes (multiple problems)  :: 31 of 88
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP120977.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Moellerella wisconsensis"
                     /mol_type="genomic DNA"
                     /strain="XJ22MSE2"
                     /isolation_source="mutton"
                     /db_xref="taxon:158849"
                     /plasmid="pXJ22MSE2-3"
                     /geo_loc_name="China: Xinjiang Province, Urumqi"
                     /lat_lon="43.45 N 87.37 E"
                     /collection_date="2022-07"
                     /collected_by="Wang Jing"
     gene            join(2344..2683,1..101)
                     /locus_tag="P8A16_RS17725"
     CDS             join(2344..2683,1..101)
                     /locus_tag="P8A16_RS17725"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015063446.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     gene            1062..1706
                     /locus_tag="P8A16_RS17730"
     CDS             1062..1706
                     /locus_tag="P8A16_RS17730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     ARG             1063..1703
                     /name="qnrD1"
                     /gene="qnrD1"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrD1"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          813..968
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 ataatgcaaa tgtcagtccg atcatctttt tcacaggtaa aaatcaacgg ttattaggtg
       61 atatttcgat gctaaaacag ctcgaagaaa aggtgcgctg acgttaggtt tacctattat
      121 tttatgtatt atcctatcta ttattctatc tcttatttta tctatttcgt ctgtaatagg
      181 tagaataata catagaataa gatacagaat aatagataga cacaagatga cgttgtgtta
      241 tttcttaccc attaatccac ctgttattct acctattact ttacccgtta ttgcacccaa
      301 tttaggtata acgggcagaa taacgggtga aataatgggt agaatcatag ttttactaac
      361 ttgcacccca tgatactttc agtatcaatg ccactcattt tctggacgaa aatgaatgac
      421 ataaggctcc gccctctggc tattttcttc ggctggacgc ctgcgaaaaa aaccattcac
      481 ccaagcccgt caaactcact gcgttcgtct gaccaccccc ttttttcgcc cctgtatttg
      541 gtcgctcaaa aatgtggtgg tcagacgctt cgcttgacgg ggggctttgc ccccaaaacg
      601 aaacacgttc actggggttc acttgccatc gctggggcgt gtcatttcgt ttcggctccc
      661 cctgtttttc cctttcttcg ctggacgctc atcaggataa aaacaaaaag cctaccgccc
      721 tcgttttact cggttggtca aatcgcttct tgccacaaaa caagtttgtg actttcagcg
      781 atttcgcatc gttttacttg tcagtttgca cgatgttaaa aacgcactca gaagcccgca
      841 aaaccgttct aaactttcag cgtagatttg ggtgttttat agggtgatcg tgtcttaaaa
      901 tcgtttcgag gggctttaat ggggatgaac gggaggtttt tgctaactaa ctcgcccgtt
      961 taacataaaa gggattgtat gaatcaattt tagctagagt ttaaggttgt tcaaattaat
     1021 gtacaatgat tgcactgtat aaataaccag gtgtagcatg tatggaaaag cactttatca
     1081 atgaaaagtt ttcacgagat caatttacgg ggaatagagt taaaaatatt gccttttcaa
     1141 attgtgattt ttcaggggtt gatttaactg atactgaatt tgttgattgt agtttttacg
     1201 acaggaatag cttggaaggg tgtgatttta atagagccaa actaaaaaac gctagcttta
     1261 aaagctgcga tttatcaatg agtaatttta aaaacattag cgccttaggt cttgaaatta
     1321 gtgagtgttt agctcaagga gctgattttc gaggggctaa ttttatgaat atgataacta
     1381 caaggtcatg gttttgtagt gcttatataa ccaagacaaa tcttagttac gctaattttt
     1441 ctagagtcat attagaaaag tgcgaactgt gggaaaatcg ctggaatggc actgtgataa
     1501 ctggcgccgt gtttcgtggc tccgatcttt cttgtgggga gttttcatcg tttgattggt
     1561 ctttggctga ttttactggt tgtgatttaa cgggtggggc gcttggcgag cttgatgcaa
     1621 ggcgaattaa tttagatgga gtgaagttgg atggagagca ggcgcttcag cttgttgaga
     1681 gtttaggtgt tattgttcac cgataaaatc taggtaaaaa acgcctaatg ccccaatgtg
     1741 gtactaatca aaacggagcg aagcgacatc ttcatcttgt ctttgctttt ctccatgatc
     1801 agttattggg tcatggtctc ttagctcgtt aatctggcta agtttggtta ggttgggctt
     1861 ctttcgacac ttcgcaatcc aagaaatccc tagtccgttg attggtgctc ttatcaggta
     1921 cgcactgtaa tctttcgata ccgcagcgtg attcggaggt agagccggaa tttcgttttc
     1981 cggtacgttt tactaccaca atttgcctgt ttatcctttc ggagaccggg ctaagtccga
     2041 gtcaatcaag tggtgcattt gggttaatgt cgttggctgg tatttaatga gaacgtgaca
     2101 agcgcctctc acgttgctaa gattggattg cgacgtctaa tctgagcaac gaatgcacaa
     2161 gatttagagt accagagccc tgtgatgctg tcacggggct ttgttacatc tggagcttgg
     2221 taaacctcat aaattcaatt cgcaacgctc gccgcaaggc gtgaacttgt ttcacgtcga
     2281 ggaagcggaa tttctcgaaa gccttatact gtctccgttc acacatgatc ggagggtgtc
     2341 tctatgtctc aattatttcg tttggcatcg ccagaagatt acgaatacat cgaagaatta
     2401 aatttatggg aattgtcatt tgataagcga ccggttcaag gggttcgttg tgaagatccg
     2461 gtgatcgggg cagaaaaata taatcaaggg cgtgaaaaat ttaaggcgtt agcgtcacgg
     2521 cataaaaaac actggaaacc gaacggattg accttttcgg agttgatccg ctgggcaata
     2581 gaatgcggaa ctccagaaca atgtcagctt gttttagcgt tataccattg cacaaacgat
     2641 gatgattatc aggcgatggg aattcagtta agccgaagta ttg
//
