LOCUS       NZ_CP120973             2683 bp    DNA     circular CON 04-APR-2024
DEFINITION  Moellerella wisconsensis strain XJ22MSE1 plasmid pXJ22MSE1-3,
            complete sequence.
ACCESSION   NZ_CP120973
VERSION     NZ_CP120973.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33921776
            Assembly: GCF_029590395.1
KEYWORDS    RefSeq.
SOURCE      Moellerella wisconsensis
  ORGANISM  Moellerella wisconsensis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Moellerella.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Wang,J.
  TITLE     Complete sequence of XJ22MSE1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2683)
  AUTHORS   Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2023) Key Laboratory of Prevention and Control of
            Biological Hazard Factors (Animal Origin) for Agrifood Safety and
            Quality, Ministry of Agriculture of China, Yangzhou University,
            No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.3.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029590395.1-RS_2024_04_04
            Annotation Date                   :: 04/04/2024 07:22:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,545
            CDSs (total)                      :: 3,438
            Genes (coding)                    :: 3,350
            CDSs (with protein)               :: 3,350
            Genes (RNA)                       :: 107
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 31 of 88
            Pseudo Genes (incomplete)         :: 68 of 88
            Pseudo Genes (internal stop)      :: 30 of 88
            Pseudo Genes (multiple problems)  :: 31 of 88
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP120973.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Moellerella wisconsensis"
                     /mol_type="genomic DNA"
                     /strain="XJ22MSE1"
                     /isolation_source="mutton"
                     /db_xref="taxon:158849"
                     /plasmid="pXJ22MSE1-3"
                     /geo_loc_name="China: Xinjiang Province, Urumqi"
                     /lat_lon="43.45 N 87.37 E"
                     /collection_date="2022-07"
                     /collected_by="Wang Jing"
     gene            join(2301..2683,1..262)
                     /locus_tag="P6F44_RS17725"
     CDS             join(2301..2683,1..262)
                     /locus_tag="P6F44_RS17725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     gene            900..1340
                     /locus_tag="P6F44_RS17730"
     CDS             900..1340
                     /locus_tag="P6F44_RS17730"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015063446.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     ARG             2302..2681
                     /name="QnrD1"
                     /gene="QnrD1"
                     /gene_name="quinolone resistance protein (qnr)"
                     /tool="rgi"
                     /drug_class="fluoroquinolone antibiotic"
                     /identity="100.0"
                     /coverage="59.35"
     ARG             3..262
                     /name="QnrD1"
                     /gene="QnrD1"
                     /gene_name="quinolone resistance protein (qnr)"
                     /tool="rgi"
                     /drug_class="fluoroquinolone antibiotic"
                     /identity="100.0"
                     /coverage="40.19"
     Typing          2052..2207
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 agtcatatta gaaaagtgcg aactgtggga aaatcgctgg aatggcactg tgataactgg
       61 cgccgtgttt cgtggctccg atctttcttg tggggagttt tcatcgtttg attggtcttt
      121 ggctgatttt actggttgtg atttaacggg tggggcgctt ggcgagcttg atgcaaggcg
      181 aattaattta gatggagtga agttggatgg agagcaggcg cttcagcttg ttgagagttt
      241 aggtgttatt gttcaccgat aaaatctagg taaaaaacgc ctaatgcccc aatgtggtac
      301 taatcaaaac ggagcgaagc gacatcttca tcttgtcttt gcttttctcc atgatcagtt
      361 attgggtcat ggtctcttag ctcgttaatc tggctaagtt tggttaggtt gggcttcttt
      421 cgacacttcg caatccaaga aatccctagt ccgttgattg gtgctcttat caggtacgca
      481 ctgtaatctt tcgataccgc agcgtgattc ggaggtagag ccggaatttc gttttccggt
      541 acgttttact accacaattt gcctgtttat cctttcggag accgggctaa gtccgagtca
      601 atcaagtggt gcatttgggt taatgtcgtt ggctggtatt taatgagaac gtgacaagcg
      661 cctctcacgt tgctaagatt ggattgcgac gtctaatctg agcaacgaat gcacaagatt
      721 tagagtacca gagccctgtg atgctgtcac ggggctttgt tacatctgga gcttggtaaa
      781 cctcataaat tcaattcgca acgctcgccg caaggcgtga acttgtttca cgtcgaggaa
      841 gcggaatttc tcgaaagcct tatactgtct ccgttcacac atgatcggag ggtgtctcta
      901 tgtctcaatt atttcgtttg gcatcgccag aagattacga atacatcgaa gaattaaatt
      961 tatgggaatt gtcatttgat aagcgaccgg ttcaaggggt tcgttgtgaa gatccggtga
     1021 tcggggcaga aaaatataat caagggcgtg aaaaatttaa ggcgttagcg tcacggcata
     1081 aaaaacactg gaaaccgaac ggattgacct tttcggagtt gatccgctgg gcaatagaat
     1141 gcggaactcc agaacaatgt cagcttgttt tagcgttata ccattgcaca aacgatgatg
     1201 attatcaggc gatgggaatt cagttaagcc gaagtattga taatgcaaat gtcagtccga
     1261 tcatcttttt cacaggtaaa aatcaacggt tattaggtga tatttcgatg ctaaaacagc
     1321 tcgaagaaaa ggtgcgctga cgttaggttt acctattatt ttatgtatta tcctatctat
     1381 tattctatct cttattttat ctatttcgtc tgtaataggt agaataatac atagaataag
     1441 atacagaata atagatagac acaagatgac gttgtgttat ttcttaccca ttaatccacc
     1501 tgttattcta cctattactt tacccgttat tgcacccaat ttaggtataa cgggcagaat
     1561 aacgggtgaa ataatgggta gaatcatagt tttactaact tgcaccccat gatactttca
     1621 gtatcaatgc cactcatttt ctggacgaaa atgaatgaca taaggctccg ccctctggct
     1681 attttcttcg gctggacgcc tgcgaaaaaa accattcacc caagcccgtc aaactcactg
     1741 cgttcgtctg accaccccct tttttcgccc ctgtatttgg tcgctcaaaa atgtggtggt
     1801 cagacgcttc gcttgacggg gggctttgcc cccaaaacga aacacgttca ctggggttca
     1861 cttgccatcg ctggggcgtg tcatttcgtt tcggctcccc ctgtttttcc ctttcttcgc
     1921 tggacgctca tcaggataaa aacaaaaagc ctaccgccct cgttttactc ggttggtcaa
     1981 atcgcttctt gccacaaaac aagtttgtga ctttcagcga tttcgcatcg ttttacttgt
     2041 cagtttgcac gatgttaaaa acgcactcag aagcccgcaa aaccgttcta aactttcagc
     2101 gtagatttgg gtgttttata gggtgatcgt gtcttaaaat cgtttcgagg ggctttaatg
     2161 gggatgaacg ggaggttttt gctaactaac tcgcccgttt aacataaaag ggattgtatg
     2221 aatcaatttt agctagagtt taaggttgtt caaattaatg tacaatgatt gcactgtata
     2281 aataaccagg tgtagcatgt atggaaaagc actttatcaa tgaaaagttt tcacgagatc
     2341 aatttacggg gaatagagtt aaaaatattg ccttttcaaa ttgtgatttt tcaggggttg
     2401 atttaactga tactgaattt gttgattgta gtttttacga caggaatagc ttggaagggt
     2461 gtgattttaa tagagccaaa ctaaaaaacg ctagctttaa aagctgcgat ttatcaatga
     2521 gtaattttaa aaacattagc gccttaggtc ttgaaattag tgagtgttta gctcaaggag
     2581 ctgattttcg aggggctaat tttatgaata tgataactac aaggtcatgg ttttgtagtg
     2641 cttatataac caagacaaat cttagttacg ctaatttttc tag
//
