LOCUS       NZ_CP120673             5754 bp    DNA     circular CON 24-MAY-2024
DEFINITION  Salmonella enterica strain SC2020597 plasmid pSC2020597_5k, complete
            sequence.
ACCESSION   NZ_CP120673
VERSION     NZ_CP120673.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33818803
            Assembly: GCF_029537315.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5754)
  AUTHORS   Peng,K.
  TITLE     Emergence of the fourth mobile sulfonamide resistance gene sul4 in
            clinical Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5754)
  AUTHORS   Peng,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAR-2023) College of Veterinary Medicine, Yangzhou
            University, No. 48, Wenhui East Road, Hanjiang District, Yangzhou,
            Sichuan 225000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029537315.1-RS_2024_05_24
            Annotation Date                   :: 05/24/2024 04:34:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,944
            CDSs (total)                      :: 4,827
            Genes (coding)                    :: 4,699
            CDSs (with protein)               :: 4,699
            Genes (RNA)                       :: 117
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 128
            CDSs (without protein)            :: 128
            Pseudo Genes (ambiguous residues) :: 0 of 128
            Pseudo Genes (frameshifted)       :: 51 of 128
            Pseudo Genes (incomplete)         :: 95 of 128
            Pseudo Genes (internal stop)      :: 26 of 128
            Pseudo Genes (multiple problems)  :: 39 of 128
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP120673.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5754
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SC2020597"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /plasmid="pSC2020597_5k"
                     /geo_loc_name="China: Guangyuan"
                     /lat_lon="32.43 N 105.83 E"
                     /collection_date="2020-11-25"
                     /collected_by="Center for Disease Control and Prevention of
                     Sichuan Province"
     gene            join(5346..5754,1..110)
                     /locus_tag="P4B13_RS24685"
                     /old_locus_tag="P4B13_24685"
     CDS             join(5346..5754,1..110)
                     /locus_tag="P4B13_RS24685"
                     /old_locus_tag="P4B13_24685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001445155.1"
                     /translation="MSEKAKKVGRRSLSKRRESLIKELWGDELSELNIWNRKEHDGFTT
                     IPRTLNYINRIIDYLAGAGSPVSQTYLSLWCRVFDEGFVEIRDKDALAFESGFSGQRAV
                     TTWLGRMKKLRELGLISTKPGTSGEFHYVIMLNPLYVIKKSYESNGWARDERYNALFSR
                     MQEVGAEWE"
                     /name="hypothetical protein"
     gene            107..670
                     /locus_tag="P4B13_RS24690"
                     /old_locus_tag="P4B13_24690"
     CDS             107..670
                     /locus_tag="P4B13_RS24690"
                     /old_locus_tag="P4B13_24690"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000999222.1"
                     /translation="MNDMKAVRHRYKQRYDFAASEVVGAFDELRSLDWSLEIASLSDVE
                     MSKRWIGAVDPNGVARLPPNGGWDWVKLYNGYLKNPSAFVCAIKSEGKLCALIGGGVSD
                     SKVVTKLHYLESAPYDTALSGYALDISVTYVVTVANAMGSEYSAIYEPNSKVREIAIND
                     YGFSEDNLFGTSKDFALYLPMSRI"
                     /name="hypothetical protein"
     gene            complement(1128..1274)
                     /locus_tag="P4B13_RS24695"
                     /old_locus_tag="P4B13_24695"
     CDS             complement(1128..1274)
                     /locus_tag="P4B13_RS24695"
                     /old_locus_tag="P4B13_24695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_050863271.1"
                     /translation="MHEPPVQSDCCALSGNYHLESNPERHAKAPLAAANGKRMYKRLLT
                     QSS"
                     /name="hypothetical protein"
     gene            1916..2239
                     /locus_tag="P4B13_RS24700"
                     /old_locus_tag="P4B13_24700"
     CDS             1916..2239
                     /locus_tag="P4B13_RS24700"
                     /old_locus_tag="P4B13_24700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001445156.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQVVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2448..>2882
                     /locus_tag="P4B13_RS24705"
                     /old_locus_tag="P4B13_24705"
                     /pseudo=""
     CDS             2448..>2882
                     /locus_tag="P4B13_RS24705"
                     /old_locus_tag="P4B13_24705"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            2917..3402
                     /locus_tag="P4B13_RS24710"
                     /old_locus_tag="P4B13_24710"
     CDS             2917..3402
                     /locus_tag="P4B13_RS24710"
                     /old_locus_tag="P4B13_24710"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_015059929.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMVRMVSQTWLTIVLVSTLLTASGASILWWQGQQIL
                     DNYTIIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            3406..3621
                     /locus_tag="P4B13_RS24715"
                     /old_locus_tag="P4B13_24715"
     CDS             3406..3621
                     /locus_tag="P4B13_RS24715"
                     /old_locus_tag="P4B13_24715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137421.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLMQRENA
                     ALSERVTGLSRQVQSLSEQLRRLSQG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(3820..4371)
                     /locus_tag="P4B13_RS24720"
                     /old_locus_tag="P4B13_24720"
     CDS             complement(3820..4371)
                     /locus_tag="P4B13_RS24720"
                     /old_locus_tag="P4B13_24720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000654246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000654246.1"
                     /translation="MKDMKAVVVFTGKDLNIMRTEGGSGYWHARTDRLNDADYLIAVRN
                     RRETWAVKDLEHGTAFLIAKITGCFKSPDYDDRNVITFDEYAEIHTPKAWKMLTDGQRY
                     PVAYLSAQEAFLRIGVTPEQLEWKKFHPSSPSVPNTVIPGLAEEKTEKLSLNEAIERAK
                     KDISNATGIDSSAITISIKI"
                     /name="hypothetical protein"
     Typing          1628..1812
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="86.17"
                     /coverage="86.0"
                     /evalue="5.83e-49"
     Typing          complement(1166..1682)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="90.595"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          2230..3725
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.184"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atccacttta cgtaattaaa aagtcatatg aatcaaatgg atgggcaagg gatgagcgtt
       61 acaacgctct attttctagg atgcaggaag tgggggcgga gtgggaatga acgacatgaa
      121 agctgttcgt caccgatata agcagagata tgattttgct gcgtcagaag tagtgggggc
      181 gtttgatgaa cttagaagtt tggattggag tttagaaatc gcatctttaa gtgacgtgga
      241 aatgtcaaag agatggattg gggctgttga tcctaacggt gttgcaagac taccacctaa
      301 cggtggatgg gactgggtta agctctacaa cggctatttg aagaacccta gcgcattcgt
      361 ctgtgccatt aaatcagaag gcaagctatg cgctctgatt ggtggcgggg tttctgatag
      421 taaagtggta actaagctgc attatcttga atcagcccct tatgacacgg ctctttcagg
      481 atatgcactg gatatttctg ttacgtatgt tgttactgtc gcgaatgcga tgggaagcga
      541 atactcagcc atctatgagc caaatagcaa agtcagagag atagctataa atgattatgg
      601 atttagcgag gacaacttgt ttgggacaag taaagatttc gctctgtatc taccaatgag
      661 ccggatttaa ccggctcatt tatcctacca gtacgccgta gagtttttct ggctgttggt
      721 ttgatcggcc ttgctctgct cgtcttgctt tcacgcgctg gcgaaatgct ccggctgtgc
      781 cagaagagca tggttccgtc gcttttttaa gttcgaccac gtgagctaac atattatttc
      841 cgttttttcg tgagttagta caaagcatat gaggtgacgg atacgtcaac ttcatagtaa
      901 ctgtactgta ttgtagaaga gatgcgcaag tcgcagaatt aatgcgaccc ttcattgacg
      961 aggcgaagag taaacgcgta tcttctttga aaacgaaaaa accacccggc aaggtggttt
     1021 ttcgaaggtt cattaaaccg gcaagtttat gaaccgtggt aacagggtgt acaagaccac
     1081 tgccaccaaa ttcgtccttc cagtttagcc gtagttgggc tgatacttca agaactctgc
     1141 gttagtaatc tcttgtacat cctcttaccg ttggctgctg ccagtggcgc ttttgcatgt
     1201 ctttccgggt tggactcaag atgatagtta ccggataagg cgcagcagtc ggactgaacg
     1261 gggggttcgt gcatacagtc cagcttggag cgaactgcct acccggaact gagtgtcagg
     1321 cgtggaatga gaaaccgcgg ccataacagc ggagtgacac cggtaaaccg aaaggcagga
     1381 acaggagagc gcacgaggga gctaccaggg ggaaacgcct gggatcttta tagtcctgtc
     1441 gggtttcgcc gcctctgatt tgagcgtcag atttcgtgat gcttgtcagg ggggcggagc
     1501 ctatggaaaa acggcaacgc cgcatccttt ttcagccctt cctgatttcc gctaagtctc
     1561 tttatccagc cattcgtgag ctggcaacgc ccgccgcagc cgaacgtcag gagcggaagc
     1621 gaccgagtga gcgaggaggc gtcatatcac cgtaacctcc attttctcct gtacgccctg
     1681 cagctgcatt tttcccctgc cacatgaagc actttcatta agtgttactc cgccgtaaca
     1741 tattgagcca gtatacactc cgctagcgtt acgtgactgg ttcagggctg cgccccgaaa
     1801 cctgctaaaa ccactgacgc gcctgcggct tgtccaacac cgcgccgacc gggaaaagat
     1861 ttcccgcccg tcccggcgtt atcaggaggc tggattggca gacaaacgca gtaaaatgct
     1921 cacgatgtgg gtgaccgaag atgagcaccg ccgtctgttg gaacgctgcg acggtaaaca
     1981 gcttgcagcc tggatgcgcc agacgtgctt ggacgagaaa cccgcccgcg ccggcaagct
     2041 tccctcgatc tcgccggcgc tgcttcgtca gcttgccggc atggggaaca acctcaacca
     2101 gattgcccgg caggttaacg ccggtggtgg cagcgggcac gaccgcgtgc aggtcgtcgc
     2161 cgcgctgatg gccatagatg ccggactcga gcggctgcgg catgccgtgc tggaaaaggg
     2221 tgcagacgat gatcgttaag tttcacccgc gagggcgcgg cggtggcgcc ggtccggtgg
     2281 attatctgct ggggaaagac cgacagcgcg acggcgccac cgttttgcag gggaagccgg
     2341 aagaagtcag ggagcttatc gacgcctcgc cctacgcaaa aaagtacaca tccggcgtcc
     2401 tgtcctttgc cgaaaaggat ttaccgcccg ggcagcgcga aaagctgatg gcgagctttg
     2461 aacgggttct gatgcccgga ctcgataaag accagtacag cgtgctgtgg gttgagcacc
     2521 aggataaggg gcggctggag ctgaacttcc tgatcccgaa catggagctg ctgactggca
     2581 ggcgtctcca gccgtattac gaccgcgccg accgtccgcg cattgatgcc tggcagacca
     2641 tcgtgaacgg caggctgggg ctgcatgacc cgaacgcgcc tgaaaaccgg cgggcgctgg
     2701 tcacgccgtc cgcgctgccg aaaacgaagc aggaagccgc tcaggcaatt acacggggtt
     2761 tactggcctt agcctcgtcc ggggagctga aaacccgcca ggacctcact gaggcgctgg
     2821 aaagcgcagg ttttgaggtg gtacgcacca caaaaagcag catcagcatt gccgacccgg
     2881 acggggggcg aaacatccga ctgaagggag ccatctatga acagtctttt aacgctggca
     2941 aaggacttag agcagaaatc gaaagcgcag cagcagagta ccggcgagat gctgaaagcc
     3001 gcattcagcg agcacgagaa gtctgtcaga gcggaactga gcgaaagcga gaagagaatc
     3061 agcgccgcca tcctcgacca cgaccggaag ctgtcctcag ccatgagcca gcgcacgaaa
     3121 ggcatggtgc gtatggtcag ccagacgtgg ctgaccatcg tcctggtgtc tacactgctg
     3181 acagcatcgg gcgcaagcat tctatggtgg caggggcagc agatactcga caattacacg
     3241 atcatccggg agcagaagag cacgcaggcc atgctgtccg agaggaacag cggcgtgcag
     3301 ctctcgacct gcggagagca gagacgccgc tgcgtgaggg tgaacccgga agcgggacgg
     3361 ttcggagagg attcgagctg gatgatactg gcggggaaat agcacatgac ggagctggaa
     3421 aaacagttgc tgagcgcatt agagcagcta cagcaggact actcgaaaag gctggacgag
     3481 tgggagaacg ccttcgcgga atggcggacg atgtctggtc ttatgcaacg ggagaacgcg
     3541 gcgctgagcg agcgcgtcac gggcttgagc aggcaggtgc agagtttgag cgagcagctg
     3601 cgccggttgt cacaaggctg aacgtgatag aggcacatcg tgagcaggaa cgggcggcgc
     3661 agcatcagaa agcgctggag ctggaacgat ctcagcgaca gcgaacgtac aacggtccgt
     3721 cactttgaat ctgtgcgccg gaaaagcatg ggcttgctgt ttctggcgta caggttcagt
     3781 tctagaacat gaggctgcta tcttgttgtt cacgcttcat cagatcttga tgcttattgt
     3841 tatggctgag ctatcaatcc ctgttgcgtt gctaatatcc tttttggctc tttcaattgc
     3901 ctcgttaagg gagagttttt ctgttttctc ttcagccaga ccaggaatca ctgtattagg
     3961 aaccgatggg gatgaaggat ggaatttctt ccattccagt tgttccggtg ttaccccaat
     4021 acgtaaaaaa gcttcctgtg cgctcaggta agcaaccgga tagcgctgac catcggttag
     4081 cattttccat gcttttggcg tgtgaatttc tgcgtattca tcaaaggtta tgacgttcct
     4141 gtcgtcgtaa tcagggcttt taaaacaccc ggtaattttg gcgatcagga atgctgtgcc
     4201 gtgttctagg tcttttactg cccacgtttc ccttctgttt cttactgcta tgaggtaatc
     4261 ggcatcgttg agcctgtctg ttctggcatg ccagtagcct gaccccccct ctgttctcat
     4321 tatgttcaaa tccttcccgg taaaaaccac aacagctttc atatctttca tatagaaacc
     4381 cttaataggt gagtaaattt cattttttta tgaaatctat acgatagaat ttgtgttgta
     4441 aatgttttta tacgataaaa tacagccccc tacctctttt attgttagtg gtaaggcttt
     4501 ctgtttggtt ttttgataaa ccggttaaaa caggggcttg gacgaggata tacattgaaa
     4561 gcatgagcca ttcacgtggc tgcatggcta tgcagtcgcg tgaaatttat caggcgcaga
     4621 atgcgcggtt tagcggggag tttactgccg gttttaccgg gctaacgccg ctttcacgct
     4681 gaacccgtcc ggagcggtgc gggcaaggga tgttatggta aatggtttct gaggtgtaag
     4741 cgaaaactcg agttttgacg ccattctgag taggtaattt gcagacggaa taaatactgg
     4801 cgagcaataa gctcatcaac aaaaaatgga gatcctaaga tggatagaga aaccctatac
     4861 ctactcaaaa cgttagacca taacaatgcc ttgcttgacg atattatccg aagaaagatg
     4921 ggtaggtact acaacacgaa gattttgcgt gattcctgtg atgctattga agccgaacta
     4981 cgacgtcgag gaatcattta aaaagacgaa gcccgcttat gtgggctttt tcattgcgca
     5041 ttcagggcac cccttccccc ccttaaaccc cctaagaacc ccattcagca cagcgagcac
     5101 aacgattaca ttagagtaca ttgagaacag cgagtacaaa atagcgcata accaattgaa
     5161 aaataaaacc gtaattgtaa aaaatattac atctcaatat ttgtattgac aaaaaaaaag
     5221 aatcatatca aatgagatgt tggttaatga tgtgcttggt ttttgtgtta ttacacataa
     5281 ctcattgaat ataataggtt ttttgttgat aatattttca tgttgaattg acttttgggg
     5341 gataaatgtc agagaaggca aaaaaagtag gtaggcgctc tctatcaaaa agaagagaaa
     5401 gtctaataaa agagctttgg ggggatgagc tttccgaact taatatatgg aacaggaaag
     5461 aacacgatgg atttacaaca atcccaagaa cattgaatta tatcaatagg ataatcgatt
     5521 accttgctgg cgctggatct cctgtgtcac agacatacct cagtttatgg tgtcgagttt
     5581 ttgacgaggg attcgtcgaa attagggata aagatgctct ggcatttgag tcagggttta
     5641 gtgggcagcg agcggtgact acttggctag gaagaatgaa aaagctacgg gagctgggac
     5701 tgatatcaac gaagcctggt acttctggcg agtttcatta tgtaatcatg ttga
//
