LOCUS       NZ_CP120548             2904 bp    DNA     circular CON 20-OCT-2023
DEFINITION  Providencia sp. PROV024 plasmid pPROV024-NR, complete sequence.
ACCESSION   NZ_CP120548
VERSION     NZ_CP120548.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33763527
            Assembly: GCF_032709665.1
KEYWORDS    RefSeq.
SOURCE      Providencia sp. PROV024
  ORGANISM  Providencia sp. PROV024
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Providencia.
REFERENCE   1  (bases 1 to 2904)
  AUTHORS   Zhou,D.
  TITLE     Complete sequence of PROV024
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2904)
  AUTHORS   Zhou,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-MAR-2023) State Key Laboratory of Pathogen and
            Biosecurity, Beijing Institute of Microbiology and Epidemiology, No.
            20, Dongdajie, Fengtai, Beijing, Beijing 100071, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. v3.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/18/2023 17:11:42
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,518
            CDSs (total)                      :: 4,414
            Genes (coding)                    :: 4,361
            CDSs (with protein)               :: 4,361
            Genes (RNA)                       :: 104
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 78
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 22 of 53
            Pseudo Genes (incomplete)         :: 41 of 53
            Pseudo Genes (internal stop)      :: 13 of 53
            Pseudo Genes (multiple problems)  :: 16 of 53
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP120548.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2904
                     /organism="Providencia sp. PROV024"
                     /mol_type="genomic DNA"
                     /strain="PROV024"
                     /host="swine"
                     /db_xref="taxon:2949758"
                     /plasmid="pPROV024-NR"
                     /geo_loc_name="China:Sichuan"
                     /collection_date="2017"
     gene            344..550
                     /locus_tag="P3L56_RS22570"
                     /old_locus_tag="P3L56_22640"
     CDS             344..550
                     /locus_tag="P3L56_RS22570"
                     /old_locus_tag="P3L56_22640"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_102140792.1"
                     /translation="MKEKIKKFIEKKPKVTTEEILNHLYHDIMIQKAQGRSWSSIIDEI
                     SFSGIYVSEASFYKHVVNKKNLI"
                     /name="hypothetical protein"
     gene            559..837
                     /locus_tag="P3L56_RS22575"
                     /old_locus_tag="P3L56_22645"
     CDS             559..837
                     /locus_tag="P3L56_RS22575"
                     /old_locus_tag="P3L56_22645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006661271.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="WP_102140793.1"
                     /translation="MGNTECLSSIAGKELKKLRRDAGYTRGQFAKLINKSEQQLFRYER
                     CVNKIDIDTLINSLIILDTDIALFFTRITKIYNKEEDSLCRTPAINI"
                     /name="helix-turn-helix transcriptional regulator"
     gene            922..1224
                     /locus_tag="P3L56_RS22580"
                     /old_locus_tag="P3L56_22650"
     CDS             922..1224
                     /locus_tag="P3L56_RS22580"
                     /old_locus_tag="P3L56_22650"
                     /inference="COORDINATES: protein motif:HMM:NF024949.3"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="WP_102140794.1"
                     /translation="MNDINEKLGLFLRNERILNSLSGAELAEILNISQQQVSRYERGQH
                     NFTVKFLIFYCKALHISLDKLITHVFLSESDIEFNAIYTTKFRAVEQENSINNNK"
                     /name="helix-turn-helix transcriptional regulator"
     gene            complement(1817..2008)
                     /locus_tag="P3L56_RS22585"
                     /old_locus_tag="P3L56_22655"
     CDS             complement(1817..2008)
                     /locus_tag="P3L56_RS22585"
                     /old_locus_tag="P3L56_22655"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_033930082.1"
                     /translation="MTLCHFLPINLSVILSIILSVILSDLGITDRITGKITDEIILLPT
                     YIYDTFSINATHFLDENE"
                     /name="hypothetical protein"
     gene            complement(2122..2562)
                     /locus_tag="P3L56_RS22590"
                     /old_locus_tag="P3L56_22660"
     CDS             complement(2122..2562)
                     /locus_tag="P3L56_RS22590"
                     /old_locus_tag="P3L56_22660"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_159120857.1"
                     /translation="MSQLFRLASPADYEYIEEIKLWELSFDKRPVQGVRCEDPVIGAEK
                     YNRGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQV
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDVSMLKQLEEKAG"
                     /name="hypothetical protein"
     Typing          complement(1270..1425)
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.726"
                     /coverage="100.0"
                     /evalue="4.9300000000000006e-73"
ORIGIN
        1 ttgtggtagt aaaacgtacc ggaaaacgaa attccggctc tgcctccgaa tcacgctgcg
       61 gtatcgaaag attacagtgc gtacctgata agagcaccaa tcaacggact agggatttct
      121 tggattgcga agtgttgaaa gaagcccaac ctaaccagac ttagcgagat taaagagcta
      181 agaagccatg acccaataac cgatcatggg gaaaagcaaa gacagaatga cgttgtcgct
      241 tcgctccatt ttgattagta ccacattggg gcattaggct ttttttatct aaaatttaat
      301 ctatccttaa ctaaggacca tttaattacc taagaaatta aaaatgaaag aaaaaataaa
      361 aaaatttatc gaaaaaaaac caaaagtaac aacagaggaa atactaaatc acttgtatca
      421 cgacattatg atccaaaaag cacaagggag aagctggtct agcattatag atgaaatcag
      481 tttttctggg atttatgtca gtgaagcttc attttacaag catgtagtaa ataaaaaaaa
      541 cctaatttag gagtgataat gggtaatacg gagtgtttat catcaatcgc aggcaaggaa
      601 ctaaaaaaat taagaagaga cgcaggctat acccgagggc aatttgctaa gttaataaac
      661 aaatcagagc agcaattatt tagatatgag cgatgtgtaa ataaaattga tatcgatact
      721 ctaataaatt cattaattat tttagataca gatatagcat tattctttac aagaataacg
      781 aaaatttata acaaagaaga agactctcta tgtagaaccc ctgcaatcaa tatttgattt
      841 aaatctcgac gtgacattaa ccagtttttt tttgcaaaaa aaaaaaaaaa aaataaaaac
      901 ataataatca gcgagttata tatgaatgat ataaatgaaa aattaggctt attcttaaga
      961 aatgaaagaa tcttaaattc gttatcagga gcagaattag ctgaaatact aaatattagt
     1021 caacaacagg tatctcggta tgaaaggggt cagcacaatt tcacagtaaa atttttaatt
     1081 ttttactgca aagcactgca catatcactc gataaactaa taacacatgt ttttttaagt
     1141 gaatctgata ttgaatttaa cgctatctac acaactaaat ttagagctgt agagcaggaa
     1201 aactcaatca ataataataa ataaaaaaat gatatagccg accaattatg aagtgccatt
     1261 aatccctttt atgttaaacg ggcgagttag ttagcgaaaa ccgcccgttc acccccatta
     1321 aagcccctca aaacgatttt aagacacgat caccctataa aacacccaaa tctacgctga
     1381 aagtttagaa cggttttgcg agcttctgag tgcgttttta acatcatgca aactgacaag
     1441 taaaacgatg cgaaatcgct gaaagataca aacttgtttt gtggcaagaa gcgatttgac
     1501 caaccgagta aaacgagggc ggtaggcttt ttgtttttct cctgatgagc gtccagcgaa
     1561 gaaagggaaa aacaggggga gccgaaacga aatgacacgc cccagcgatg gcaagtgaac
     1621 cccagtgaac gtgtttcgtt ttgggggcaa agccccccgt caagcgaagc gtctgaccac
     1681 cacatttttg agcgaccaaa tacagggcga aaaaaggggg tggtcagacg aacgcagtga
     1741 gtttgacggg cttgggtgaa tggctttttt cgcaggcgtc cagccgaaga aaatagccag
     1801 agggcggagc cttatgtcat tcattttcgt ccagaaaatg agtggcattg atactgaaag
     1861 tatcatagat gtaggttggt aaaaggatga tttcatccgt tattttaccc gttattctat
     1921 ccgttatacc taaatcggat aaaataacgg acagaataat ggatagaata acggatagat
     1981 taatgggtaa gaaatgacac aacgtcatct tgtgtctatc tcttattctg tatcttattc
     2041 tctgtattat tctgtgtatt agagagaaat tagatagaat aagatacgga ataatacaca
     2101 ggataataaa caaacatgac attaacctgc cttttcctcg agctgtttta gcatcgaaac
     2161 atcacctaat aaccgttgat ttttacctgt gaaaaagatg atcgggctga catttgcatt
     2221 atcaatactt cggcttaact gaattcccat cacctgataa tcatcatcgt ttgtgcaatg
     2281 gtataacgct aaaacaagct gacattgttc gggagttccg cactctattg cccagcggat
     2341 caactccgaa aaggtcaatc cgttcggttt ccagtgtttt ttatgccgtg acgctaacgc
     2401 cttaaatttt tcacgccctc gattgtattt ttctgccccg atcaccggat cttcacaacg
     2461 aaccccttga accggtcgct tatcaaatga caattcccat aattttattt cttcgatgta
     2521 ttcgtaatct gccggtgatg ccaaacgaaa taattgagac atagtgatcc cctccgatga
     2581 tgtgtgaacg gagatattat aaggctttcg ggaaattccg cttcctcgac gtgaaacaag
     2641 ttcacgcctt gcggcgagcg ttgcgaattg aatttacaga agttattagg cttcagatgt
     2701 aacaaagccc cgtgacagca tcacagggct ctggtactct aaatcttgtg cattcattgc
     2761 tcagatttcg aagtcgcatt ccaatcttag caatgggaag ctagcttgtc actacttcct
     2821 taaaaccatt caacgacatt aactcaaatg caccacttga ttgactcgga cttagcccgg
     2881 tctccgaaag gataaacagg caaa
//
