LOCUS       NZ_CP120124             3217 bp    DNA     circular CON 24-DEC-2023
DEFINITION  Staphylococcus aureus strain Dog053 plasmid unnamed3, complete
            sequence.
ACCESSION   NZ_CP120124
VERSION     NZ_CP120124.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33696791
            Assembly: GCF_034023835.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 3217)
  AUTHORS   Akarsu,H., Liljander,A., Lacasta,A., Ssajjakambwe,P., Brodard,I.,
            Cherbuin,J., Kuhnert,P., Perreten,V., Torres Puig,S., Labroussaa,F.
            and Jores,J.
  TITLE     Canine Staphylococcaceae circulating in a Kenyan animal shelter
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3217)
  AUTHORS   Akarsu,H., Liljander,A., Lacasta,A., Ssajjakambwe,P., Brodard,I.,
            Cherbuin,J., Kuhnert,P., Perreten,V., Torres Puig,S., Labroussaa,F.
            and Jores,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-DEC-2023) Institute of Veterinary Bacteriology,
            University of Bern, Langgassstrasse 122, Bern 3001, Switzerland
  REMARK    Annotation added by database at the request of the submitter
REFERENCE   3  (bases 1 to 3217)
  AUTHORS   Akarsu,H., Liljander,A., Lacasta,A., Ssajjakambwe,P., Brodard,I.,
            Cherbuin,J., Kuhnert,P., Perreten,V., Torres Puig,S., Labroussaa,F.
            and Jores,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2023) Institute of Veterinary Bacteriology,
            University of Bern, Langgassstrasse 122, Bern 3001, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: AUG-2022
            Assembly Method                   :: Flye v. v2.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 242x
            Sequencing Technology             :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/24/2023 14:09:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,832
            CDSs (total)                      :: 2,750
            Genes (coding)                    :: 2,663
            CDSs (with protein)               :: 2,663
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 87
            CDSs (without protein)            :: 87
            Pseudo Genes (ambiguous residues) :: 0 of 87
            Pseudo Genes (frameshifted)       :: 46 of 87
            Pseudo Genes (incomplete)         :: 35 of 87
            Pseudo Genes (internal stop)      :: 21 of 87
            Pseudo Genes (multiple problems)  :: 15 of 87
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP120124.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3217
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="Dog053"
                     /isolation_source="nasal swab"
                     /host="Canis lupus familiaris"
                     /db_xref="taxon:1280"
                     /plasmid="unnamed3"
                     /geo_loc_name="Kenya:Nairobi"
                     /lat_lon="1.3345 S 36.7331 E"
                     /collection_date="2015-06-27"
                     /collected_by="Joerg Jores, Anna Lacasta, Anne Liljander,
                     Paul Ssajjakambwe (International Livestock Research
                     Institute, ILRI)"
     gene            complement(353..1348)
                     /locus_tag="P3T98_RS14150"
                     /old_locus_tag="P3T98_14150"
     CDS             complement(353..1348)
                     /locus_tag="P3T98_RS14150"
                     /old_locus_tag="P3T98_14150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001199892.1"
                     /translation="MQYNTTRSITENQDNKTLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNILEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQKVI
                     EKVIKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTKAFDRLSRYKKVKQNLVGFMRST
                     EVTVNKNDGSYNQHMHVLLCVENAYFRKKENYITQEEWVNLWQRALQVDYRPVANVKAI
                     KPNRKGDKDIESAIKETSKYSVKSSDFLTDDDEKNQEIVSDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDVEDGNLINASDEDKTTDEEEKAHSITAIWNFEKQNYYLRH"
                     /name="protein rep"
     gene            1800..2381
                     /locus_tag="P3T98_RS14155"
                     /old_locus_tag="P3T98_14155"
     CDS             1800..2381
                     /locus_tag="P3T98_RS14155"
                     /old_locus_tag="P3T98_14155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000991705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000991705.1"
                     /translation="MNAIQNSISLRKILVVSLSILTILSMVLDFNFKEAQAQNKNNIAD
                     KNVETLNEKEIEKELKYIYGKIIILDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDIEN
                     KKKTSSISPRAVGGNYKNSGDCFYSEVLNSYGELLTGNIITAVFEDVKAKNLKGVAKKL
                     AKIGIKGNLAGIAATMVSKDVQCNLKYGLL"
                     /name="hypothetical protein"
     gene            complement(2707..2895)
                     /locus_tag="P3T98_RS14160"
                     /old_locus_tag="P3T98_14160"
     CDS             complement(2707..2895)
                     /locus_tag="P3T98_RS14160"
                     /old_locus_tag="P3T98_14160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001030810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001039248.1"
                     /translation="MNKNTVLDEGYVIATILNVFFLLGLIFISHLENLYILIPYVILMG
                     INAIYLVVKVMNFKKNN"
                     /name="hypothetical protein"
     Typing          complement(119..283)
                     /name="MOBV"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.42e-81"
     Typing          complement(354..1348)
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.9"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tttacatgca aattaaaaat tagcataaaa tcctttaaaa cttccacatg tttttctaaa
       61 ttcctgcagg gcgtttttta tcaaaaatcg agaattttta atttttctct aaaaactccg
      121 taagagcata aggagaattt gctatcattc aaaaatgata ggtctggcaa agccagacat
      181 tccaggggtt ttaaggtatt ttaaagtgat atcatacaaa gctgtactgt cttatttttg
      241 tgacacaata tattgcgttt gtcttatttt tgtgacacta catacagcat ttgtcacaaa
      301 aataagacag tactttttta taaaaaatca acaaaaaaga cattagtcaa cactaatgtc
      361 ttaaataata attttgcttt tcgaaattcc aaattgcggt aattgaatgt gctttttctt
      421 cttcgtctgt tgttttatct tcatcacttg cattaatcaa attaccatct tcgacatcgt
      481 ctaagtttaa aattttatgt ttttgtttaa gcaatccacc ataacttaac atacgttttc
      541 gatacaaacc tttttctaaa tcacttacaa tttcttgatt tttttcatca tcatcagtta
      601 aaaaatcaga tgatttaacc gaatattttg aggtctcttt gattgccgat tcaatgtctt
      661 tatcgccttt tctattcggt ttgatcgctt taacattagc aacaggtcga tagtcaactt
      721 gtaatgctct ttgccataaa ttaacccatt cttcttgagt tatataattc tctttttttc
      781 taaaatatgc attttcaaca cataacaaaa catgcatgtg ctgattataa ctaccgtcat
      841 ttttattaac ggtaacttct gttgaacgca taaatccaac aagattttgt ttaacctttt
      901 tatatctact caacctatca aatgctttag ttagatgctt caaactttgt tctaaagtat
      961 ctccatctat cgcatttttt gttgaaagtg ttaaaaacaa ccaacgtgct tttggctttt
     1021 ccttaattac tttttcaatc actttttgag cttgataact atttttcata gcacgtctcc
     1081 aattacaaac cggacataat tttgatttac aaaaccatgt cttatgtaac ttcaaatagc
     1141 cttcatcagt tggcttaaat tctaaaatat taccacattg ttttacatta aaagcctttt
     1201 tgatttttaa aatttctagt atatctgcat agcttacatt atctattttc ttttctctcc
     1261 atgggcgttg tttcccactt ttcgtcatat cttttaacgt tttattatct tgattttcgg
     1321 ttatacttct agtagtatta tattgcatat aaaaagaccc ccagtattat ttaagattcg
     1381 acaccttaat aatataactg gggtttttta ttgtcaaatt ttcctttcac gcacaaaaac
     1441 acgtttaaac actgtaatat caacagttac agctatatat ataaaatcga gttatttcta
     1501 tatagtatca agacaagaag aaactcgttc acactcgttt caaaaaacaa cctattcctt
     1561 cttcttttta tgaccctcta aacctaaata aattaatgtg aaaaccaatg aataaataaa
     1621 actttctaaa aagtcaaaag gattatcaaa taaaatcgaa ttaacaaaat taaaaattaa
     1681 aaatacagat aataaaataa tcaaaaagta aaaaaactta ttcatattaa actcctttgt
     1741 ttttatatgt taatattata ttgaattcat ttaaataaca aaacaagggg gcatttacaa
     1801 tgaatgcaat tcaaaacagt atatcactaa gaaagatttt agtagtatct ttaagtattt
     1861 taaccatact ttcaatggtc ttggatttta atttcaaaga agctcaagcc caaaacaaaa
     1921 ataacattgc agataaaaac gttgaaactt taaacgaaaa agaaattgaa aaagaactaa
     1981 aatacatata tggcaaaatt attattttag ataaagacgg aacagctaaa gatgttaatc
     2041 tagaaaatgc caaatctcga tatggatatg ttcctgaagg attccaaaaa ctaaaaaacg
     2101 acatagagaa taaaaagaaa actagttcaa tatcacctag agcagttggt gggaactaca
     2161 aaaatagcgg tgactgtttc tattctgaag ttttaaactc atatggagaa cttttaactg
     2221 gaaacataat cacagcagtt tttgaagatg ttaaagccaa aaacttaaag ggcgtagcaa
     2281 aaaaattagc taaaattggg ataaaaggaa acctagctgg aatcgcagct actatggttt
     2341 cgaaggatgt acaatgtaat cttaaatacg ggttacttta gatactattt attccaattg
     2401 ctttattgac gttgagcctc ggaaccctta acaatcccaa aacttgtcgc atggtcggct
     2461 taatagctca cgctatgccg acattcgtct gcaagtttag ttaagggttc ttctcaacat
     2521 caataaattt tctcggcata aatgcgtcgt ctatttttta ttatcttcat gataatcata
     2581 tttttcttcc atctcgtcaa aagcatcatc tttatagaaa aacaaaaagt aagcaacaac
     2641 accaatagga ataaaaaaac agtgtgaaaa caagaagaaa ctcgtttcaa aatcccctca
     2701 aatattctaa ttattctttt tgaaattcat aaccttaaca accaaataaa tagcatttat
     2761 tcccatcaaa ataacatacg gaattaatat atataaattt tccaaatgag atataaaaat
     2821 taatccaagt aaaaagaaaa catttaaaat agttgctata acgtaacctt catctaacac
     2881 tgtgttttta ttcaaaataa acactccttt tttaaaaaac tttatcacaa gacttactca
     2941 aattataaat acctttattt tgagttttaa gggggtattt taaaggttta ggggggtatc
     3001 atataggttt ttaacttaaa aatatataca agctcttaaa acgcaaatat gagccaaata
     3061 aatatatggt aatttcacaa acaaaaattt cagcaaaacc agtgactaat tttttaacac
     3121 tgcccattta catgcaaatt aaaaattagc ataaaatcct ttaaaacttc cacatgtttt
     3181 tctaaattcc tgcagggcgt tttttatcaa aaatcga
//
