LOCUS       NZ_CP120110             3152 bp    DNA     circular CON 06-JAN-2024
DEFINITION  Staphylococcus aureus strain Dog105 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP120110
VERSION     NZ_CP120110.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33696796
            Assembly: GCF_034032775.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 3152)
  AUTHORS   Akarsu,H., Liljander,A., Lacasta,A., Ssajjakambwe,P., Brodard,I.,
            Cherbuin,J., Kuhnert,P., Perreten,V., Torres Puig,S., Labroussaa,F.
            and Jores,J.
  TITLE     Canine Staphylococcaceae circulating in a Kenyan animal shelter
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3152)
  AUTHORS   Akarsu,H., Liljander,A., Lacasta,A., Ssajjakambwe,P., Brodard,I.,
            Cherbuin,J., Kuhnert,P., Perreten,V., Torres Puig,S., Labroussaa,F.
            and Jores,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2023) Institute of Veterinary Bacteriology,
            University of Bern, Langgassstrasse 122, Bern 3001, Switzerland
  REMARK    Annotation added by database at submitter's request
REFERENCE   3  (bases 1 to 3152)
  AUTHORS   Akarsu,H., Liljander,A., Lacasta,A., Ssajjakambwe,P., Brodard,I.,
            Cherbuin,J., Kuhnert,P., Perreten,V., Torres Puig,S., Labroussaa,F.
            and Jores,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2023) Institute of Veterinary Bacteriology,
            University of Bern, Langgassstrasse 122, Bern 3001, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: AUG-2022
            Assembly Method                   :: Flye v. v2.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 281x
            Sequencing Technology             :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/06/2024 10:43:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,836
            CDSs (total)                      :: 2,754
            Genes (coding)                    :: 2,666
            CDSs (with protein)               :: 2,666
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 47 of 88
            Pseudo Genes (incomplete)         :: 35 of 88
            Pseudo Genes (internal stop)      :: 21 of 88
            Pseudo Genes (multiple problems)  :: 15 of 88
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP120110.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3152
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="Dog105"
                     /isolation_source="nasal swab"
                     /host="Canis lupus familiaris"
                     /db_xref="taxon:1280"
                     /plasmid="unnamed2"
                     /geo_loc_name="Kenya:Nairobi"
                     /lat_lon="1.3345 S 36.7331 E"
                     /collection_date="2015-06-27"
                     /collected_by="Joerg Jores, Anna Lacasta, Anne Liljander,
                     Paul Ssajjakambwe (International Livestock Research
                     Institute, ILRI)"
     gene            complement(join(2356..3152,1..225))
                     /locus_tag="P3T87_RS14170"
                     /old_locus_tag="P3T87_14170"
                     /pseudo=""
     CDS             complement(join(2356..3152,1..225))
                     /locus_tag="P3T87_RS14170"
                     /old_locus_tag="P3T87_14170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /name="protein rep"
     gene            677..1258
                     /locus_tag="P3T87_RS14175"
                     /old_locus_tag="P3T87_14175"
     CDS             677..1258
                     /locus_tag="P3T87_RS14175"
                     /old_locus_tag="P3T87_14175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000991705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000991705.1"
                     /translation="MNAIQNSISLRKILVVSLSILTILSMVLDFNFKEAQAQNKNNIAD
                     KNVETLNEKEIEKELKYIYGKIIILDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDIEN
                     KKKTSSISPRAVGGNYKNSGDCFYSEVLNSYGELLTGNIITAVFEDVKAKNLKGVAKKL
                     AKIGIKGNLAGIAATMVSKDVQCNLKYGLL"
                     /name="hypothetical protein"
     gene            complement(1584..1772)
                     /locus_tag="P3T87_RS14180"
                     /old_locus_tag="P3T87_14180"
     CDS             complement(1584..1772)
                     /locus_tag="P3T87_RS14180"
                     /old_locus_tag="P3T87_14180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001030810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001039248.1"
                     /translation="MNKNTVLDEGYVIATILNVFFLLGLIFISHLENLYILIPYVILMG
                     INAIYLVVKVMNFKKNN"
                     /name="hypothetical protein"
     Typing          complement(2122..2286)
                     /name="MOBV"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.42e-81"
     Typing          complement(2357..3152)
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.875"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgtaacttc aaatagcctt catcagttgg cttaaattct aaaatattac cacattgttt
       61 tacattaaaa gcctttttga tttttaaaat ttctagtata tctgcatagc ttacattatc
      121 tattttcttt tctctccatg ggcgttgttt cccacttttc gtcatatctt ttaacgtttt
      181 attatcttga ttttcggtta tacttctagt agtattatat tgcatataaa aagaccccca
      241 gtattattta agattcgaca ccttaataat ataactgggg ttttttattg tcaaattttc
      301 ctttcacgca caaaaacacg tttaaacact gtaatatcaa cagttacagc tatatatata
      361 aaatcgagtt atttctatat agtatcaaga caagaagaaa ctcgttcaca ctcgtttcaa
      421 aaaacaacct attccttctt ctttttatga ccctctaaac ctaaataaat taatgtgaaa
      481 accaatgaat aaataaaact ttctaaaaag tcaaaaggat tatcaaataa aatcgaatta
      541 acaaaattaa aaattaaaaa tacagataat aaaataatca aaaagtaaaa aaacttattc
      601 atattaaact cctttgtttt tatatgttaa tattatattg aattcattta aataacaaaa
      661 caagggggca tttacaatga atgcaattca aaacagtata tcactaagaa agattttagt
      721 agtatcttta agtattttaa ccatactttc aatggtcttg gattttaatt tcaaagaagc
      781 tcaagcccaa aacaaaaata acattgcaga taaaaacgtt gaaactttaa acgaaaaaga
      841 aattgaaaaa gaactaaaat acatatatgg caaaattatt attttagata aagacggaac
      901 agctaaagat gttaatctag aaaatgccaa atctcgatat ggatatgttc ctgaaggatt
      961 ccaaaaacta aaaaacgaca tagagaataa aaagaaaact agttcaatat cacctagagc
     1021 agttggtggg aactacaaaa atagcggtga ctgtttctat tctgaagttt taaactcata
     1081 tggagaactt ttaactggaa acataatcac agcagttttt gaagatgtta aagccaaaaa
     1141 cttaaagggc gtagcaaaaa aattagctaa aattgggata aaaggaaacc tagctggaat
     1201 cgcagctact atggtttcga aggatgtaca atgtaatctt aaatacgggt tactttagat
     1261 actatttatt ccaattgctt tattgacgtt gagcctcgga acccttaaca atcccaaaac
     1321 ttgtcgcatg gtcggcttaa tagctcacgc tatgccgaca ttcgtctgca agtttagtta
     1381 agggttcttc tcaacatcaa taaattttct cggcataaat gcgtcgtcta ttttttatta
     1441 tcttcatgat aatcatattt ttcttccatc tcgtcaaaag catcatcttt atagaaaaac
     1501 aaaaagtaag caacaacacc aataggaata aaaaaacagt gtgaaaacaa gaagaaactc
     1561 gtttcaaaat cccctcaaat attctaatta ttctttttga aattcataac cttaacaacc
     1621 aaataaatag catttattcc catcaaaata acatacggaa ttaatatata taaattttcc
     1681 aaatgagata taaaaattaa tccaagtaaa aagaaaacat ttaaaatagt tgctataacg
     1741 taaccttcat ctaacactgt gtttttattc aaaataaaca ctcctttttt aaaaaacttt
     1801 atcacaagac ttactcaaat tataaatacc tttattttga gttttaaggg ggtattttaa
     1861 aggtttaggg gggtatcata taggttttta acttaaaaat atatacaagc tcttaaaacg
     1921 caaatatgag ccaaataaat atatggtaat ttcacaaaca aaaatttcag caaaaccagt
     1981 gactaatttt ttaacactgc ccatttacat gcaaattaaa aattagcata aaatccttta
     2041 aaacttccac atgtttttct aaattcctgc agggcgtttt ttatcaaaaa tcgagaattt
     2101 ttaatttttc tctaaaaact ccgtaagagc ataaggagaa tttgctatca ttcaaaaatg
     2161 ataggtctgg caaagccaga cattccaggg gttttaaggt attttaaagt gatatcatac
     2221 aaagctgtac tgtcttattt ttgtgacaca atatattgcg tttgtcttat ttttgtgaca
     2281 ctacatacag catttgtcac aaaaataaga cagtactttt ttataaaaaa tcaacaaaaa
     2341 agacattagt caacactaat gtcttaaata ataattttgc ttttcgaaat tccaaattgc
     2401 ggtaattgaa tgtgcttttt cttcttcgtc tgttgtttta tcttcatcac ttgcattaat
     2461 caaattacca tcttcgacat cgtctaagtt taaaatttta tgtttttgtt taagcaatcc
     2521 accataactt aacatacgtt ttcgatacaa acctttttct aaatcactta caatttcttg
     2581 atttttttca tcatcatcag ttaaaaaatc agatgattta accgaatatt ttgaggtctc
     2641 tttgattgcc gattcaatgt ctttatcgcc ttttctattc ggtttgatcg ctttaacatt
     2701 agcaacaggt cgatagtcaa cttgtaatgc tctttgccat aaattaaccc attcttcttg
     2761 agttatataa ttctcttttt ttctaaaata tgcattttca acacataaca aaacatgcat
     2821 gtgctgatta taactaccgt catttttatt aacggtaact tctgttgaac gcataaatcc
     2881 aacaagattt tgtttaacct ttttatatct actcaaccta tcaaatgctt tagttagatg
     2941 cttcaaactt tgttctaaag tatctccatc tatcgcattt tttgttgaaa gtgttaaaaa
     3001 caaccaacgt gcttttggct tttccttaat tactttttca atcacttttt gagcttgata
     3061 actatttttc atagcacgtc tccaattaca aaccggacat aattttgatt tacaaaacca
     3121 tgtcttatgt aacttcaaat agccttcatc ag
//
