LOCUS       NZ_CP120098             3128 bp    DNA     circular CON 06-JAN-2024
DEFINITION  Staphylococcus aureus strain Dog110 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP120098
VERSION     NZ_CP120098.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33696800
            Assembly: GCF_034029575.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 3128)
  AUTHORS   Akarsu,H., Liljander,A., Lacasta,A., Ssajjakambwe,P., Brodard,I.,
            Cherbuin,J., Kuhnert,P., Perreten,V., Torres Puig,S., Labroussaa,F.
            and Jores,J.
  TITLE     Canine Staphylococcaceae circulating in a Kenyan animal shelter
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3128)
  AUTHORS   Akarsu,H., Liljander,A., Lacasta,A., Ssajjakambwe,P., Brodard,I.,
            Cherbuin,J., Kuhnert,P., Perreten,V., Torres Puig,S., Labroussaa,F.
            and Jores,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2023) Institute of Veterinary Bacteriology,
            University of Bern, Langgassstrasse 122, Bern 3001, Switzerland
  REMARK    Annotation added by database at submitter's request
REFERENCE   3  (bases 1 to 3128)
  AUTHORS   Akarsu,H., Liljander,A., Lacasta,A., Ssajjakambwe,P., Brodard,I.,
            Cherbuin,J., Kuhnert,P., Perreten,V., Torres Puig,S., Labroussaa,F.
            and Jores,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2023) Institute of Veterinary Bacteriology,
            University of Bern, Langgassstrasse 122, Bern 3001, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: AUG-2022
            Assembly Method                   :: Flye v. v2.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 396x
            Sequencing Technology             :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/06/2024 10:57:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,860
            CDSs (total)                      :: 2,778
            Genes (coding)                    :: 2,689
            CDSs (with protein)               :: 2,689
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 89
            CDSs (without protein)            :: 89
            Pseudo Genes (ambiguous residues) :: 0 of 89
            Pseudo Genes (frameshifted)       :: 46 of 89
            Pseudo Genes (incomplete)         :: 37 of 89
            Pseudo Genes (internal stop)      :: 21 of 89
            Pseudo Genes (multiple problems)  :: 15 of 89
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP120098.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3128
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="Dog110"
                     /isolation_source="nasal swab"
                     /host="Canis lupus familiaris"
                     /db_xref="taxon:1280"
                     /plasmid="unnamed2"
                     /geo_loc_name="Kenya:Nairobi"
                     /lat_lon="1.3345 S 36.7331 E"
                     /collection_date="2015-06-27"
                     /collected_by="Joerg Jores, Anna Lacasta, Anne Liljander,
                     Paul Ssajjakambwe (International Livestock Research
                     Institute, ILRI)"
     gene            10..1005
                     /locus_tag="P3T92_RS14290"
                     /old_locus_tag="P3T92_14290"
     CDS             10..1005
                     /locus_tag="P3T92_RS14290"
                     /old_locus_tag="P3T92_14290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001199892.1"
                     /translation="MQYNTTRSITENQDNKTLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNILEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQKVI
                     EKVIKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTKAFDRLSRYKKVKQNLVGFMRST
                     EVTVNKNDGSYNQHMHVLLCVENAYFRKKENYITQEEWVNLWQRALQVDYRPVANVKAI
                     KPNRKGDKDIESAIKETSKYSVKSSDFLTDDDEKNQEIVSDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDVEDGNLINASDEDKTTDEEEKAHSITAIWNFEKQNYYLRH"
                     /name="protein rep"
     gene            1589..1777
                     /locus_tag="P3T92_RS14295"
                     /old_locus_tag="P3T92_14295"
     CDS             1589..1777
                     /locus_tag="P3T92_RS14295"
                     /old_locus_tag="P3T92_14295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001030810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001039248.1"
                     /translation="MNKNTVLDEGYVIATILNVFFLLGLIFISHLENLYILIPYVILMG
                     INAIYLVVKVMNFKKNN"
                     /name="hypothetical protein"
     gene            complement(2103..2684)
                     /locus_tag="P3T92_RS14300"
                     /old_locus_tag="P3T92_14300"
     CDS             complement(2103..2684)
                     /locus_tag="P3T92_RS14300"
                     /old_locus_tag="P3T92_14300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000991705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000991705.1"
                     /translation="MNAIQNSISLRKILVVSLSILTILSMVLDFNFKEAQAQNKNNIAD
                     KNVETLNEKEIEKELKYIYGKIIILDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDIEN
                     KKKTSSISPRAVGGNYKNSGDCFYSEVLNSYGELLTGNIITAVFEDVKAKNLKGVAKKL
                     AKIGIKGNLAGIAATMVSKDVQCNLKYGLL"
                     /name="hypothetical protein"
     Typing          1076..1240
                     /name="MOBV"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.42e-81"
     Typing          11..1005
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.9"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tctttttata tgcaatataa tactactaga agtataaccg aaaatcaaga taataaaacg
       61 ttaaaagata tgacgaaaag tgggaaacaa cgcccatgga gagaaaagaa aatagataat
      121 gtaagctatg cagatatact agaaatttta aaaatcaaaa aggcttttaa tgtaaaacaa
      181 tgtggtaata ttttagaatt taagccaact gatgaaggct atttgaagtt acataagaca
      241 tggttttgta aatcaaaatt atgtccggtt tgtaattgga gacgtgctat gaaaaatagt
      301 tatcaagctc aaaaagtgat tgaaaaagta attaaggaaa agccaaaagc acgttggttg
      361 tttttaacac tttcaacaaa aaatgcgata gatggagata ctttagaaca aagtttgaag
      421 catctaacta aagcatttga taggttgagt agatataaaa aggttaaaca aaatcttgtt
      481 ggatttatgc gttcaacaga agttaccgtt aataaaaatg acggtagtta taatcagcac
      541 atgcatgttt tgttatgtgt tgaaaatgca tattttagaa aaaaagagaa ttatataact
      601 caagaagaat gggttaattt atggcaaaga gcattacaag ttgactatcg acctgttgct
      661 aatgttaaag cgatcaaacc gaatagaaaa ggcgataaag acattgaatc ggcaatcaaa
      721 gagacctcaa aatattcggt taaatcatct gattttttaa ctgatgatga tgaaaaaaat
      781 caagaaattg taagtgattt agaaaaaggt ttgtatcgaa aacgtatgtt aagttatggt
      841 ggattgctta aacaaaaaca taaaatttta aacttagacg atgtcgaaga tggtaatttg
      901 attaatgcaa gtgatgaaga taaaacaaca gacgaagaag aaaaagcaca ttcaattacc
      961 gcaatttgga atttcgaaaa gcaaaattat tatttaagac attagtgttg actaatgtct
     1021 tttttgttga ttttttataa aaaagtactg tcttattttt gtgacaaatg ctgtatgtag
     1081 tgtcacaaaa ataagacaaa cgcaatatat tgtgtcacaa aaataagaca gtacagcttt
     1141 gtatgatatc actttaaaat accttaaaac ccctggaatg tctggctttg ccagacctat
     1201 catttttgaa tgatagcaaa ttctccttat gctcttacgg agtttttaga gaaaaattaa
     1261 aaattctcga tttttgataa aaaacgccct gcaggaattt agaaaaacat gtggaagttt
     1321 taaaggattt tatgctaatt tttaatttgc atgtaaatgg gcagtgttaa aaaattagtc
     1381 actggttttg ctgaaatttt tgtttgtgaa attaccatat atttatttgg ctcatatttg
     1441 cgttttaaga gcttgtatat atttttaagt taaaaaccta tatgataccc ccctaaacct
     1501 ttaaaatacc cccttaaaac tcaaaataaa ggtatttata atttgagtaa gtcttgtgat
     1561 aaagtttttt aaaaaaggag tgtttatttt gaataaaaac acagtgttag atgaaggtta
     1621 cgttatagca actattttaa atgttttctt tttacttgga ttaattttta tatctcattt
     1681 ggaaaattta tatatattaa ttccgtatgt tattttgatg ggaataaatg ctatttattt
     1741 ggttgttaag gttatgaatt tcaaaaagaa taattagaat atttgagggg attttgaaac
     1801 gagtttcttc ttgttttcac actgtttttt tattcctatt ggtgttgttg cttacttttt
     1861 gtttttctat aaagatgatg cttttgacga gatggaagaa aaatatgatt atcatgaaga
     1921 taataaaaaa tagacgacgc atttatgccg agaaaattta ttgatgttga gaagaaccct
     1981 taactaaact tgcagacgaa tgtcggcata gcgtgagcta ttaagccgac catgcgacaa
     2041 gttttgggat tgttaagggt tccgaggctc aacgtcaata aagcaattgg aataaatagt
     2101 atctaaagta acccgtattt aagattacat tgtacatcct tcgaaaccat agtagctgcg
     2161 attccagcta ggtttccttt tatcccaatt ttagctaatt tttttgctac gccctttaag
     2221 tttttggctt taacatcttc aaaaactgct gtgattatgt ttccagttaa aagttctcca
     2281 tatgagttta aaacttcaga atagaaacag tcaccgctat ttttgtagtt cccaccaact
     2341 gctctaggtg atattgaact agttttcttt ttattctcta tgtcgttttt tagtttttgg
     2401 aatccttcag gaacatatcc atatcgagat ttggcatttt ctagattaac atctttagct
     2461 gttccgtctt tatctaaaat aataattttg ccatatatgt attttagttc tttttcaatt
     2521 tctttttcgt ttaaagtttc aacgttttta tctgcaatgt tatttttgtt ttgggcttga
     2581 gcttctttga aattaaaatc caagaccatt gaaagtatgg ttaaaatact taaagatact
     2641 actaaaatct ttcttagtga tatactgttt tgaattgcat tcattgtaaa tgcccccttg
     2701 ttttgttatt taaatgaatt caatataata ttaacatata aaaacaaagg agtttaatat
     2761 gaataagttt ttttactttt tgattatttt attatctgta tttttaattt ttaattttgt
     2821 taattcgatt ttatttgata atccttttga ctttttagaa agttttattt attcattggt
     2881 tttcacatta atttatttag gtttagaggg tcataaaaag aagaaggaat aggttgtttt
     2941 ttgaaacgag tgtgaacgag tttcttcttg tcttgatact atatagaaat aactcgattt
     3001 tatatatata gctgtaactg ttgatattac agtgtttaaa cgtgtttttg tgcgtgaaag
     3061 gaaaatttga caataaaaaa ccccagttat attattaagg tgtcgaatct taaataatac
     3121 tgggggtc
//
