LOCUS       NZ_CP120095             3121 bp    DNA     circular CON 06-JAN-2024
DEFINITION  Staphylococcus aureus strain Dog111 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP120095
VERSION     NZ_CP120095.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33696801
            Assembly: GCF_034028795.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 3121)
  AUTHORS   Akarsu,H., Liljander,A., Lacasta,A., Ssajjakambwe,P., Brodard,I.,
            Cherbuin,J., Kuhnert,P., Perreten,V., Torres Puig,S., Labroussaa,F.
            and Jores,J.
  TITLE     Canine Staphylococcaceae circulating in a Kenyan animal shelter
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3121)
  AUTHORS   Akarsu,H., Liljander,A., Lacasta,A., Ssajjakambwe,P., Brodard,I.,
            Cherbuin,J., Kuhnert,P., Perreten,V., Torres Puig,S., Labroussaa,F.
            and Jores,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2023) Institute of Veterinary Bacteriology,
            University of Bern, Langgassstrasse 122, Bern 3001, Switzerland
  REMARK    Annotation added by database at submitter's request
REFERENCE   3  (bases 1 to 3121)
  AUTHORS   Akarsu,H., Liljander,A., Lacasta,A., Ssajjakambwe,P., Brodard,I.,
            Cherbuin,J., Kuhnert,P., Perreten,V., Torres Puig,S., Labroussaa,F.
            and Jores,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2023) Institute of Veterinary Bacteriology,
            University of Bern, Langgassstrasse 122, Bern 3001, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: AUG-2022
            Assembly Method                   :: Flye v. v2.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 799x
            Sequencing Technology             :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/06/2024 10:52:36
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,834
            CDSs (total)                      :: 2,752
            Genes (coding)                    :: 2,665
            CDSs (with protein)               :: 2,665
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 87
            CDSs (without protein)            :: 87
            Pseudo Genes (ambiguous residues) :: 0 of 87
            Pseudo Genes (frameshifted)       :: 46 of 87
            Pseudo Genes (incomplete)         :: 35 of 87
            Pseudo Genes (internal stop)      :: 21 of 87
            Pseudo Genes (multiple problems)  :: 15 of 87
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP120095.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3121
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="Dog111"
                     /isolation_source="nasal swab"
                     /host="Canis lupus familiaris"
                     /db_xref="taxon:1280"
                     /plasmid="unnamed2"
                     /geo_loc_name="Kenya:Nairobi"
                     /lat_lon="1.3345 S 36.7331 E"
                     /collection_date="2015-06-27"
                     /collected_by="Joerg Jores, Anna Lacasta, Anne Liljander,
                     Paul Ssajjakambwe (International Livestock Research
                     Institute, ILRI)"
     gene            join(2196..3121,1..65)
                     /locus_tag="P3U59_RS14160"
                     /old_locus_tag="P3U59_14160"
                     /pseudo=""
     CDS             join(2196..3121,1..65)
                     /locus_tag="P3U59_RS14160"
                     /old_locus_tag="P3U59_14160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /name="protein rep"
     gene            649..837
                     /locus_tag="P3U59_RS14165"
                     /old_locus_tag="P3U59_14165"
     CDS             649..837
                     /locus_tag="P3U59_RS14165"
                     /old_locus_tag="P3U59_14165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001030810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001039248.1"
                     /translation="MNKNTVLDEGYVIATILNVFFLLGLIFISHLENLYILIPYVILMG
                     INAIYLVVKVMNFKKNN"
                     /name="hypothetical protein"
     gene            complement(1163..1744)
                     /locus_tag="P3U59_RS14170"
                     /old_locus_tag="P3U59_14170"
     CDS             complement(1163..1744)
                     /locus_tag="P3U59_RS14170"
                     /old_locus_tag="P3U59_14170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000991705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000991705.1"
                     /translation="MNAIQNSISLRKILVVSLSILTILSMVLDFNFKEAQAQNKNNIAD
                     KNVETLNEKEIEKELKYIYGKIIILDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDIEN
                     KKKTSSISPRAVGGNYKNSGDCFYSEVLNSYGELLTGNIITAVFEDVKAKNLKGVAKKL
                     AKIGIKGNLAGIAATMVSKDVQCNLKYGLL"
                     /name="hypothetical protein"
     Typing          136..300
                     /name="MOBV"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.42e-81"
     Typing          2197..3121
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.892"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 aaaaagcaca ttcaattacc gcaatttgga atttcgaaaa gcaaaattat tatttaagac
       61 attagtgttg actaatgtct tttttgttga ttttttataa aaaagtactg tcttattttt
      121 gtgacaaatg ctgtatgtag tgtcacaaaa ataagacaaa cgcaatatat tgtgtcacaa
      181 aaataagaca gtacagcttt gtatgatatc actttaaaat accttaaaac ccctggaatg
      241 tctggctttg ccagacctat catttttgaa tgatagcaaa ttctccttat gctcttacgg
      301 agtttttaga gaaaaattaa aaattctcga tttttgataa aaaacgccct gcaggaattt
      361 agaaaaacat gtggaagttt taaaggattt tatgctaatt tttaatttgc atgtaaatgg
      421 gcagtgttaa aaaattagtc actggttttg ctgaaatttt tgtttgtgaa attaccatat
      481 atttatttgg ctcatatttg cgttttaaga gcttgtatat atttttaagt taaaaaccta
      541 tatgataccc ccctaaacct ttaaaatacc cccttaaaac tcaaaataaa ggtatttata
      601 atttgagtaa gtcttgtgat aaagtttttt aaaaaaggag tgtttatttt gaataaaaac
      661 acagtgttag atgaaggtta cgttatagca actattttaa atgttttctt tttacttgga
      721 ttaattttta tatctcattt ggaaaattta tatatattaa ttccgtatgt tattttgatg
      781 ggaataaatg ctatttattt ggttgttaag gttatgaatt tcaaaaagaa taattagaat
      841 atttgagggg attttgaaac gagtttcttc ttgttttcac actgtttttt tattcctatt
      901 ggtgttgttg cttacttttt gtttttctat aaagatgatg cttttgacga gatggaagaa
      961 aaatatgatt atcatgaaga taataaaaaa tagacgacgc atttatgccg agaaaattta
     1021 ttgatgttga gaagaaccct taactaaact tgcagacgaa tgtcggcata gcgtgagcta
     1081 ttaagccgac catgcgacaa gttttgggat tgttaagggt tccgaggctc aacgtcaata
     1141 aagcaattgg aataaatagt atctaaagta acccgtattt aagattacat tgtacatcct
     1201 tcgaaaccat agtagctgcg attccagcta ggtttccttt tatcccaatt ttagctaatt
     1261 tttttgctac gccctttaag tttttggctt taacatcttc aaaaactgct gtgattatgt
     1321 ttccagttaa aagttctcca tatgagttta aaacttcaga atagaaacag tcaccgctat
     1381 ttttgtagtt cccaccaact gctctaggtg atattgaact agttttcttt ttattctcta
     1441 tgtcgttttt tagtttttgg aatccttcag gaacatatcc atatcgagat ttggcatttt
     1501 ctagattaac atctttagct gttccgtctt tatctaaaat aataattttg ccatatatgt
     1561 attttagttc tttttcaatt tctttttcgt ttaaagtttc aacgttttta tctgcaatgt
     1621 tatttttgtt ttgggcttga gcttctttga aattaaaatc caagaccatt gaaagtatgg
     1681 ttaaaatact taaagatact actaaaatct ttcttagtga tatactgttt tgaattgcat
     1741 tcattgtaaa tgcccccttg ttttgttatt taaatgaatt caatataata ttaacatata
     1801 aaaacaaagg agtttaatat gaataagttt ttttactttt tgattatttt attatctgta
     1861 tttttaattt ttaattttgt taattcgatt ttatttgata atccttttga ctttttagaa
     1921 agttttattt attcattggt tttcacatta atttatttag gtttagaggg tcataaaaag
     1981 aagaaggaat aggttgtttt ttgaaacgag tgtgaacgag tttcttcttg tcttgatact
     2041 atatagaaat aactcgattt tatatatata gctgtaactg ttgatattac agtgtttaaa
     2101 cgtgtttttg tgcgtgaaag gaaaatttga caataaaaaa ccccagttat attattaagg
     2161 tgtcgaatct taaataatac tgggggtctt tttatatgca atataatact actagaagta
     2221 taaccgaaaa tcaagataat aaaacgttaa aagatatgac gaaaagtggg aaacaacgcc
     2281 catggagaga aaagaaaata gataatgtaa gctatgcaga tatactagaa attttaaaaa
     2341 tcaaaaaggc ttttaatgta aaacaatgtg gtaatatttt agaatttaag ccaactgatg
     2401 aaggctattt gaagttacat aagacatggt tttgtaaatc aaaattatgt ccggtttgta
     2461 attggagacg tgctatgaaa aatagttatc aagctcaaaa agtgattgaa aaagtaatta
     2521 aggaaaagcc aaaagcacgt tggttgtttt taacactttc aacaaaaaat gcgatagatg
     2581 gagatacttt agaacaaagt ttgaagcatc taactaaagc atttgatagg ttgagtagat
     2641 ataaaaaggt taaacaaaat cttgttggat ttatgcgttc aacagaagtt accgttaata
     2701 aaaatgacgg tagttataat cagcacatgc atgttttgtt atgtgttgaa aatgcatatt
     2761 ttagaaaaaa agagaattat ataactcaag aagaatgggt taatttatgg caaagagcat
     2821 tacaagttga ctatcgacct gttgctaatg ttaaagcgat caaaccgaat agaaaaggcg
     2881 ataaagacat tgaatcggca atcaaagaga cctcaaaata ttcggttaaa tcatctgatt
     2941 ttttaactga tgatgatgaa aaaaatcaag aaattgtaag tgatttagaa aaaggtttgt
     3001 atcgaaaacg tatgttaagt tatggtggat tgcttaaaca aaaacataaa attttaaact
     3061 tagacgatgt cgaagatggt aatttgatta atgcaagtga tgaagataaa acaacagacg
     3121 a
//
