LOCUS       NZ_CP120055             3225 bp    DNA     circular CON 23-DEC-2023
DEFINITION  Staphylococcus aureus strain Dog130 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP120055
VERSION     NZ_CP120055.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33696817
            Assembly: GCF_034479795.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 3225)
  AUTHORS   Akarsu,H., Liljander,A., Lacasta,A., Ssajjakambwe,P., Brodard,I.,
            Cherbuin,J., Kuhnert,P., Perreten,V., Torres Puig,S., Labroussaa,F.
            and Jores,J.
  TITLE     Canine Staphylococcaceae circulating in a Kenyan animal shelter
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3225)
  AUTHORS   Akarsu,H., Liljander,A., Lacasta,A., Ssajjakambwe,P., Brodard,I.,
            Cherbuin,J., Kuhnert,P., Perreten,V., Torres Puig,S., Labroussaa,F.
            and Jores,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2023) Institute of Veterinary Bacteriology,
            University of Bern, Langgassstrasse 122, Bern 3001, Switzerland
  REMARK    Annotation added by database at the submitter's request
REFERENCE   3  (bases 1 to 3225)
  AUTHORS   Akarsu,H., Liljander,A., Lacasta,A., Ssajjakambwe,P., Brodard,I.,
            Cherbuin,J., Kuhnert,P., Perreten,V., Torres Puig,S., Labroussaa,F.
            and Jores,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2023) Institute of Veterinary Bacteriology,
            University of Bern, Langgassstrasse 122, Bern 3001, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: AUG-2022
            Assembly Method                   :: Flye v. v2.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 369x
            Sequencing Technology             :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/23/2023 12:09:45
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,835
            CDSs (total)                      :: 2,753
            Genes (coding)                    :: 2,666
            CDSs (with protein)               :: 2,666
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 87
            CDSs (without protein)            :: 87
            Pseudo Genes (ambiguous residues) :: 0 of 87
            Pseudo Genes (frameshifted)       :: 46 of 87
            Pseudo Genes (incomplete)         :: 35 of 87
            Pseudo Genes (internal stop)      :: 21 of 87
            Pseudo Genes (multiple problems)  :: 15 of 87
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP120055.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3225
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="Dog130"
                     /isolation_source="nasal swab"
                     /host="Canis lupus familiaris"
                     /db_xref="taxon:1280"
                     /plasmid="unnamed2"
                     /geo_loc_name="Kenya:Nairobi"
                     /lat_lon="1.3345 S 36.7331 E"
                     /collection_date="2015-06-27"
                     /collected_by="Joerg Jores, Anna Lacasta, Anne Liljander,
                     Paul Ssajjakambwe (International Livestock Research
                     Institute, ILRI)"
     gene            complement(665..1660)
                     /locus_tag="P3U09_RS14165"
                     /old_locus_tag="P3U09_14165"
     CDS             complement(665..1660)
                     /locus_tag="P3U09_RS14165"
                     /old_locus_tag="P3U09_14165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001199892.1"
                     /translation="MQYNTTRSITENQDNKTLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNILEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQKVI
                     EKVIKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTKAFDRLSRYKKVKQNLVGFMRST
                     EVTVNKNDGSYNQHMHVLLCVENAYFRKKENYITQEEWVNLWQRALQVDYRPVANVKAI
                     KPNRKGDKDIESAIKETSKYSVKSSDFLTDDDEKNQEIVSDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDVEDGNLINASDEDKTTDEEEKAHSITAIWNFEKQNYYLRH"
                     /name="protein rep"
     gene            2112..2693
                     /locus_tag="P3U09_RS14170"
                     /old_locus_tag="P3U09_14170"
     CDS             2112..2693
                     /locus_tag="P3U09_RS14170"
                     /old_locus_tag="P3U09_14170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000991705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000991705.1"
                     /translation="MNAIQNSISLRKILVVSLSILTILSMVLDFNFKEAQAQNKNNIAD
                     KNVETLNEKEIEKELKYIYGKIIILDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDIEN
                     KKKTSSISPRAVGGNYKNSGDCFYSEVLNSYGELLTGNIITAVFEDVKAKNLKGVAKKL
                     AKIGIKGNLAGIAATMVSKDVQCNLKYGLL"
                     /name="hypothetical protein"
     gene            complement(3019..3207)
                     /locus_tag="P3U09_RS14175"
                     /old_locus_tag="P3U09_14175"
     CDS             complement(3019..3207)
                     /locus_tag="P3U09_RS14175"
                     /old_locus_tag="P3U09_14175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001030810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001039248.1"
                     /translation="MNKNTVLDEGYVIATILNVFFLLGLIFISHLENLYILIPYVILMG
                     INAIYLVVKVMNFKKNN"
                     /name="hypothetical protein"
     Typing          complement(431..595)
                     /name="MOBV"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.42e-81"
     Typing          complement(666..1660)
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.9"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aaaaattaat ccaagtaaaa agaaaacatt taaaatagtt gctataacgt aaccttcatc
       61 taacactgtg tttttattca aaataaacac tcctttttta aaaaacttta tcacaagact
      121 tactcaaatt ataaatacct ttattttgag ttttaagggg gtattttaaa ggtttagggg
      181 ggtatcatat aggtttttaa cttaaaaata tatacaagct cttaaaacgc aaatatgagc
      241 caaataaata tatggtaatt tcacaaacaa aaatttcagc aaaaccagtg actaattttt
      301 taacactgcc catttacatg caaattaaaa attagcataa aatcctttaa aacttccaca
      361 tgtttttcta aattcctgca gggcgttttt tatcaaaaat cgagaatttt taatttttct
      421 ctaaaaactc cgtaagagca taaggagaat ttgctatcat tcaaaaatga taggtctggc
      481 aaagccagac attccagggg ttttaaggta ttttaaagtg atatcataca aagctgtact
      541 gtcttatttt tgtgacacaa tatattgcgt ttgtcttatt tttgtgacac tacatacagc
      601 atttgtcaca aaaataagac agtacttttt tataaaaaat caacaaaaaa gacattagtc
      661 aacactaatg tcttaaataa taattttgct tttcgaaatt ccaaattgcg gtaattgaat
      721 gtgctttttc ttcttcgtct gttgttttat cttcatcact tgcattaatc aaattaccat
      781 cttcgacatc gtctaagttt aaaattttat gtttttgttt aagcaatcca ccataactta
      841 acatacgttt tcgatacaaa cctttttcta aatcacttac aatttcttga tttttttcat
      901 catcatcagt taaaaaatca gatgatttaa ccgaatattt tgaggtctct ttgattgccg
      961 attcaatgtc tttatcgcct tttctattcg gtttgatcgc tttaacatta gcaacaggtc
     1021 gatagtcaac ttgtaatgct ctttgccata aattaaccca ttcttcttga gttatataat
     1081 tctctttttt tctaaaatat gcattttcaa cacataacaa aacatgcatg tgctgattat
     1141 aactaccgtc atttttatta acggtaactt ctgttgaacg cataaatcca acaagatttt
     1201 gtttaacctt tttatatcta ctcaacctat caaatgcttt agttagatgc ttcaaacttt
     1261 gttctaaagt atctccatct atcgcatttt ttgttgaaag tgttaaaaac aaccaacgtg
     1321 cttttggctt ttccttaatt actttttcaa tcactttttg agcttgataa ctatttttca
     1381 tagcacgtct ccaattacaa accggacata attttgattt acaaaaccat gtcttatgta
     1441 acttcaaata gccttcatca gttggcttaa attctaaaat attaccacat tgttttacat
     1501 taaaagcctt tttgattttt aaaatttcta gtatatctgc atagcttaca ttatctattt
     1561 tcttttctct ccatgggcgt tgtttcccac ttttcgtcat atcttttaac gttttattat
     1621 cttgattttc ggttatactt ctagtagtat tatattgcat ataaaaagac ccccagtatt
     1681 atttaagatt cgacacctta ataatataac tggggttttt tattgtcaaa ttttcctttc
     1741 acgcacaaaa acacgtttaa acactgtaat atcaacagtt acagctatat atataaaatc
     1801 gagttatttc tatatagtat caagacaaga agaaactcgt tcacactcgt ttcaaaaaac
     1861 aacctattcc ttcttctttt tatgaccctc taaacctaaa taaattaatg tgaaaaccaa
     1921 tgaataaata aaactttcta aaaagtcaaa aggattatca aataaaatcg aattaacaaa
     1981 attaaaaatt aaaaatacag ataataaaat aatcaaaaag taaaaaaact tattcatatt
     2041 aaactccttt gtttttatat gttaatatta tattgaattc atttaaataa caaaacaagg
     2101 gggcatttac aatgaatgca attcaaaaca gtatatcact aagaaagatt ttagtagtat
     2161 ctttaagtat tttaaccata ctttcaatgg tcttggattt taatttcaaa gaagctcaag
     2221 cccaaaacaa aaataacatt gcagataaaa acgttgaaac tttaaacgaa aaagaaattg
     2281 aaaaagaact aaaatacata tatggcaaaa ttattatttt agataaagac ggaacagcta
     2341 aagatgttaa tctagaaaat gccaaatctc gatatggata tgttcctgaa ggattccaaa
     2401 aactaaaaaa cgacatagag aataaaaaga aaactagttc aatatcacct agagcagttg
     2461 gtgggaacta caaaaatagc ggtgactgtt tctattctga agttttaaac tcatatggag
     2521 aacttttaac tggaaacata atcacagcag tttttgaaga tgttaaagcc aaaaacttaa
     2581 agggcgtagc aaaaaaatta gctaaaattg ggataaaagg aaacctagct ggaatcgcag
     2641 ctactatggt ttcgaaggat gtacaatgta atcttaaata cgggttactt tagatactat
     2701 ttattccaat tgctttattg acgttgagcc tcggaaccct taacaatccc aaaacttgtc
     2761 gcatggtcgg cttaatagct cacgctatgc cgacattcgt ctgcaagttt agttaagggt
     2821 tcttctcaac atcaataaat tttctcggca taaatgcgtc gtctattttt tattatcttc
     2881 atgataatca tatttttctt ccatctcgtc aaaagcatca tctttataga aaaacaaaaa
     2941 gtaagcaaca acaccaatag gaataaaaaa acagtgtgaa aacaagaaga aactcgtttc
     3001 aaaatcccct caaatattct aattattctt tttgaaattc ataaccttaa caaccaaata
     3061 aatagcattt attcccatca aaataacata cggaattaat atatataaat tttccaaatg
     3121 agatataaaa attaatccaa gtaaaaagaa aacatttaaa atagttgcta taacgtaacc
     3181 ttcatctaac actgtgtttt tattcaaaat aaacactcct ttttt
//
