LOCUS       NZ_CP120040             3126 bp    DNA     circular CON 06-JAN-2024
DEFINITION  Staphylococcus aureus strain Dog137 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP120040
VERSION     NZ_CP120040.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33696822
            Assembly: GCF_034043235.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 3126)
  AUTHORS   Akarsu,H., Liljander,A., Lacasta,A., Ssajjakambwe,P., Brodard,I.,
            Cherbuin,J., Kuhnert,P., Perreten,V., Torres Puig,S., Labroussaa,F.
            and Jores,J.
  TITLE     Canine Staphylococcaceae circulating in a Kenyan animal shelter
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3126)
  AUTHORS   Akarsu,H., Liljander,A., Lacasta,A., Ssajjakambwe,P., Brodard,I.,
            Cherbuin,J., Kuhnert,P., Perreten,V., Torres Puig,S., Labroussaa,F.
            and Jores,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2023) Institute of Veterinary Bacteriology,
            University of Bern, Langgassstrasse 122, Bern 3001, Switzerland
  REMARK    Annotation added by database at the submitter's request
REFERENCE   3  (bases 1 to 3126)
  AUTHORS   Akarsu,H., Liljander,A., Lacasta,A., Ssajjakambwe,P., Brodard,I.,
            Cherbuin,J., Kuhnert,P., Perreten,V., Torres Puig,S., Labroussaa,F.
            and Jores,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2023) Institute of Veterinary Bacteriology,
            University of Bern, Langgassstrasse 122, Bern 3001, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: AUG-2022
            Assembly Method                   :: Flye v. v2.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 231x
            Sequencing Technology             :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/06/2024 11:30:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,829
            CDSs (total)                      :: 2,747
            Genes (coding)                    :: 2,659
            CDSs (with protein)               :: 2,659
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 47 of 88
            Pseudo Genes (incomplete)         :: 35 of 88
            Pseudo Genes (internal stop)      :: 21 of 88
            Pseudo Genes (multiple problems)  :: 15 of 88
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP120040.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3126
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="Dog137"
                     /isolation_source="nasal swab"
                     /host="Canis lupus familiaris"
                     /db_xref="taxon:1280"
                     /plasmid="unnamed2"
                     /geo_loc_name="Kenya:Nairobi"
                     /lat_lon="1.3345 S 36.7331 E"
                     /collection_date="2015-06-27"
                     /collected_by="Joerg Jores, Anna Lacasta, Anne Liljander,
                     Paul Ssajjakambwe (International Livestock Research
                     Institute, ILRI)"
     gene            345..926
                     /locus_tag="P3U24_RS14135"
                     /old_locus_tag="P3U24_14135"
     CDS             345..926
                     /locus_tag="P3U24_RS14135"
                     /old_locus_tag="P3U24_14135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000991705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000991705.1"
                     /translation="MNAIQNSISLRKILVVSLSILTILSMVLDFNFKEAQAQNKNNIAD
                     KNVETLNEKEIEKELKYIYGKIIILDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDIEN
                     KKKTSSISPRAVGGNYKNSGDCFYSEVLNSYGELLTGNIITAVFEDVKAKNLKGVAKKL
                     AKIGIKGNLAGIAATMVSKDVQCNLKYGLL"
                     /name="hypothetical protein"
     gene            complement(1252..1440)
                     /locus_tag="P3U24_RS14140"
                     /old_locus_tag="P3U24_14140"
     CDS             complement(1252..1440)
                     /locus_tag="P3U24_RS14140"
                     /old_locus_tag="P3U24_14140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001030810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001039248.1"
                     /translation="MNKNTVLDEGYVIATILNVFFLLGLIFISHLENLYILIPYVILMG
                     INAIYLVVKVMNFKKNN"
                     /name="hypothetical protein"
     gene            complement(2024..3019)
                     /locus_tag="P3U24_RS14145"
                     /old_locus_tag="P3U24_14145"
     CDS             complement(2024..3019)
                     /locus_tag="P3U24_RS14145"
                     /old_locus_tag="P3U24_14145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001199892.1"
                     /translation="MQYNTTRSITENQDNKTLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNILEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQKVI
                     EKVIKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTKAFDRLSRYKKVKQNLVGFMRST
                     EVTVNKNDGSYNQHMHVLLCVENAYFRKKENYITQEEWVNLWQRALQVDYRPVANVKAI
                     KPNRKGDKDIESAIKETSKYSVKSSDFLTDDDEKNQEIVSDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDVEDGNLINASDEDKTTDEEEKAHSITAIWNFEKQNYYLRH"
                     /name="protein rep"
     Typing          complement(1790..1954)
                     /name="MOBV"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.42e-81"
     Typing          complement(2025..3019)
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.9"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aatatcaaca gttacagcta tatatataaa atcgagttat ttctatatag tatcaagaca
       61 agaagaaact cgttcacact cgtttcaaaa aacaacctat tccttcttct ttttatgacc
      121 ctctaaacct aaataaatta atgtgaaaac caatgaataa ataaaacttt ctaaaaagtc
      181 aaaaggatta tcaaataaaa tcgaattaac aaaattaaaa attaaaaata cagataataa
      241 aataatcaaa aagtaaaaaa acttattcat attaaactcc tttgttttta tatgttaata
      301 ttatattgaa ttcatttaaa taacaaaaca agggggcatt tacaatgaat gcaattcaaa
      361 acagtatatc actaagaaag attttagtag tatctttaag tattttaacc atactttcaa
      421 tggtcttgga ttttaatttc aaagaagctc aagcccaaaa caaaaataac attgcagata
      481 aaaacgttga aactttaaac gaaaaagaaa ttgaaaaaga actaaaatac atatatggca
      541 aaattattat tttagataaa gacggaacag ctaaagatgt taatctagaa aatgccaaat
      601 ctcgatatgg atatgttcct gaaggattcc aaaaactaaa aaacgacata gagaataaaa
      661 agaaaactag ttcaatatca cctagagcag ttggtgggaa ctacaaaaat agcggtgact
      721 gtttctattc tgaagtttta aactcatatg gagaactttt aactggaaac ataatcacag
      781 cagtttttga agatgttaaa gccaaaaact taaagggcgt agcaaaaaaa ttagctaaaa
      841 ttgggataaa aggaaaccta gctggaatcg cagctactat ggtttcgaag gatgtacaat
      901 gtaatcttaa atacgggtta ctttagatac tatttattcc aattgcttta ttgacgttga
      961 gcctcggaac ccttaacaat cccaaaactt gtcgcatggt cggcttaata gctcacgcta
     1021 tgccgacatt cgtctgcaag tttagttaag ggttcttctc aacatcaata aattttctcg
     1081 gcataaatgc gtcgtctatt ttttattatc ttcatgataa tcatattttt cttccatctc
     1141 gtcaaaagca tcatctttat agaaaaacaa aaagtaagca acaacaccaa taggaataaa
     1201 aaaacagtgt gaaaacaaga agaaactcgt ttcaaaatcc cctcaaatat tctaattatt
     1261 ctttttgaaa ttcataacct taacaaccaa ataaatagca tttattccca tcaaaataac
     1321 atacggaatt aatatatata aattttccaa atgagatata aaaattaatc caagtaaaaa
     1381 gaaaacattt aaaatagttg ctataacgta accttcatct aacactgtgt ttttattcaa
     1441 aataaacact ccttttttaa aaaactttat cacaagactt actcaaatta taaatacctt
     1501 tattttgagt tttaaggggg tattttaaag gtttaggggg gtatcatata ggtttttaac
     1561 ttaaaaatat atacaagctc ttaaaacgca aatatgagcc aaataaatat atggtaattt
     1621 cacaaacaaa aatttcagca aaaccagtga ctaatttttt aacactgccc atttacatgc
     1681 aaattaaaaa ttagcataaa atcctttaaa acttccacat gtttttctaa attcctgcag
     1741 ggcgtttttt atcaaaaatc gagaattttt aatttttctc taaaaactcc gtaagagcat
     1801 aaggagaatt tgctatcatt caaaaatgat aggtctggca aagccagaca ttccaggggt
     1861 tttaaggtat tttaaagtga tatcatacaa agctgtactg tcttattttt gtgacacaat
     1921 atattgcgtt tgtcttattt ttgtgacact acatacagca tttgtcacaa aaataagaca
     1981 gtactttttt ataaaaaatc aacaaaaaag acattagtca acactaatgt cttaaataat
     2041 aattttgctt ttcgaaattc caaattgcgg taattgaatg tgctttttct tcttcgtctg
     2101 ttgttttatc ttcatcactt gcattaatca aattaccatc ttcgacatcg tctaagttta
     2161 aaattttatg tttttgttta agcaatccac cataacttaa catacgtttt cgatacaaac
     2221 ctttttctaa atcacttaca atttcttgat ttttttcatc atcatcagtt aaaaaatcag
     2281 atgatttaac cgaatatttt gaggtctctt tgattgccga ttcaatgtct ttatcgcctt
     2341 ttctattcgg tttgatcgct ttaacattag caacaggtcg atagtcaact tgtaatgctc
     2401 tttgccataa attaacccat tcttcttgag ttatataatt ctcttttttt ctaaaatatg
     2461 cattttcaac acataacaaa acatgcatgt gctgattata actaccgtca tttttattaa
     2521 cggtaacttc tgttgaacgc ataaatccaa caagattttg tttaaccttt ttatatctac
     2581 tcaacctatc aaatgcttta gttagatgct tcaaactttg ttctaaagta tctccatcta
     2641 tcgcattttt tgttgaaagt gttaaaaaca accaacgtgc ttttggcttt tccttaatta
     2701 ctttttcaat cactttttga gcttgataac tatttttcat agcacgtctc caattacaaa
     2761 ccggacataa ttttgattta caaaaccatg tcttatgtaa cttcaaatag ccttcatcag
     2821 ttggcttaaa ttctaaaata ttaccacatt gttttacatt aaaagccttt ttgattttta
     2881 aaatttctag tatatctgca tagcttacat tatctatttt cttttctctc catgggcgtt
     2941 gtttcccact tttcgtcata tcttttaacg ttttattatc ttgattttcg gttatacttc
     3001 tagtagtatt atattgcata taaaaagacc cccagtatta tttaagattc gacaccttaa
     3061 taatataact ggggtttttt attgtcaaat tttcctttca cgcacaaaaa cacgtttaaa
     3121 cactgt
//
