LOCUS       NZ_CP119756             2175 bp    DNA     linear   CON 19-MAY-2024
DEFINITION  Superficieibacter sp. HKU1 plasmid pHKU2, complete sequence.
ACCESSION   NZ_CP119756
VERSION     NZ_CP119756.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33581340
            Assembly: GCF_029319185.1
KEYWORDS    RefSeq.
SOURCE      Superficieibacter sp. HKU1
  ORGANISM  Superficieibacter sp. HKU1
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Superficieibacter.
REFERENCE   1  (bases 1 to 2175)
  AUTHORS   Chen,J.H., Chung,T.W., Yuen,K.Y. and Cheng,V.C.
  TITLE     Complete genome of Superficieibacter hongkongensis, a novel
            Enterobacteriaceae family member isolated from a hospitalised
            patient
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2175)
  AUTHORS   Chen,J.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-MAR-2023) Microbiology, The University of Hong Kong,
            Pokfulam Road, Pokfulam 000000, Hong Kong
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 03-MAR-2023
            Assembly Method                   :: Unicycler v. 0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 80.0x
            Sequencing Technology :: Illumina iSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029319185.1-RS_2024_05_19
            Annotation Date                   :: 05/19/2024 04:58:34
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,634
            CDSs (total)                      :: 4,524
            Genes (coding)                    :: 4,447
            CDSs (with protein)               :: 4,447
            Genes (RNA)                       :: 110
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 23 of 77
            Pseudo Genes (incomplete)         :: 48 of 77
            Pseudo Genes (internal stop)      :: 24 of 77
            Pseudo Genes (multiple problems)  :: 15 of 77
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP119756.1.
            Bacteria and source DNA available from Queen Mary Hospital, The
            University of Hong Kong, Hong Kong.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2175
                     /organism="Superficieibacter sp. HKU1"
                     /mol_type="genomic DNA"
                     /strain="HKU1"
                     /isolation_source="wound tissue"
                     /host="Homo sapiens"
                     /db_xref="taxon:3031919"
                     /plasmid="pHKU2"
                     /geo_loc_name="Hong Kong"
                     /collection_date="2022-10-19"
     gene            <1..379
                     /locus_tag="P0H77_RS23170"
                     /old_locus_tag="P0H77_23175"
     CDS             <1..379
                     /locus_tag="P0H77_RS23170"
                     /old_locus_tag="P0H77_23175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676030.1"
                     /GO_function="GO:0005515 - protein binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="WP_276165228.1"
                     /translation="SRAQTSWIPTIIPVIIGILLLPFYGLGLLIIIPVLLRVWSTELAL
                     TNQRVIAKVGLIRRNTVELRIDKVESLGIHQGILGRIFNYGSIVIKGTGGTNTPIPNIK
                     APMQFRSIVNNHIEEMNSKQQ"
                     /name="PH domain-containing protein"
     gene            complement(645..881)
                     /locus_tag="P0H77_RS23175"
                     /old_locus_tag="P0H77_23180"
     CDS             complement(645..881)
                     /locus_tag="P0H77_RS23175"
                     /old_locus_tag="P0H77_23180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016230891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016230891.1"
                     /translation="MTRLTNLTPAEKKFIDDAIAAAERAAGKKLNQPNRHIVLNRARAQ
                     IESQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     Typing          complement(1046..1218)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="84.659"
                     /coverage="100.0"
                     /evalue="9.74e-41"
     Typing          1165..1678
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.037"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 atctcgcgct caaacctcct ggattccaac aatcatccca gtaattatcg gaatcttgtt
       61 gctgcctttt tacggcttag ggttacttat aataatccct gtgctcctta gagtttggtc
      121 aacggagctt gcattaacta accaaagagt catcgcaaaa gtgggtttga tccgacgcaa
      181 tacggtggaa ctccgtattg ataaagttga aagccttggc atacatcaag ggatactggg
      241 acgaatcttt aactatgggt ctatcgtgat taaaggcact ggcggaacca acactccaat
      301 tccaaacatc aaggcgccaa tgcaattcag atcgattgtg aacaatcata tcgaggaaat
      361 gaattctaag cagcagtagc ttcctcgtag cattacaaaa aaagccctac ggggcttttt
      421 ttgtacctgc caatcagctg gatttaccat aacacccgtt gcccgcaccg cctcagaggc
      481 tctcagggcg tttctccgcc ctaatacgca aaagaacacg tatgacctcc tgaaaaacgt
      541 tcagaaacgc tctggtgatt tttgagcgca tgaatcgtta tgcacgcggg tgaatcgcag
      601 gtgatttcgc agcgtcagca ccactaaacc gccaaaatcc gcaatcagcg gcgcggcgcg
      661 cgcggacgtg accaggcaaa atcggactgc tgccgctcat cctcacgtaa tgcacgctgg
      721 cggtcggcgt aacgctgcga ctcaatctgc gcacgcgctc tgttcagaac gatgtgccgg
      781 ttaggctgat tgagcttctt cccggccgca cgttcggcag cggctatagc gtcgtcgata
      841 aactttttct cagcgggggt caggtttgta agtctcgtca tgtttatctc cgtatgagaa
      901 tagtcccagc agtctgccag acacagtagg aacgatgaag cgtaagcgac ggtgaaaggc
      961 agtcagaaac ggtgaacggg agcggatttt aatccggtgc cgtgaggcgt tggacaagcc
     1021 gcaggcgcgt cagtggattt agcgggtttc ggggcgcagc cctgaaccag tcacgtagcg
     1081 ctagcggagt gtatactggc ttattatgtt ggcatgagtg cggtaatcag gaaagtgctt
     1141 catgtgacag aggaaaatgc agctgcgggc gtaaggcaga aaatggaagt tcagaggata
     1201 tgacgcctcc tcgctcactc agtcgcggac gctcctgccg ttcggctgcg gcgggcgtta
     1261 cctgcacacg gagaagagca aaggcatatg gcatgacaaa cggggcagaa aaaggatgcg
     1321 gcgctgccgt ttttccatag gctccgcccc cctgacaagc atcacagaat ctgacgctca
     1381 aatcagtggt ggcgaaaccc gacaggacta taaagatccc aggcgtttcc ccctggtagc
     1441 tccctcgtgc gctctcctgt tcctgccttt cggtgtaccg gtgtcattcc gctgttatgg
     1501 ccgcgtttat ctcattccac gcctgacact cagttccggg taggcagttc gctccaagct
     1561 ggactgtatg cacgaacccc ccgttcagtc cgactaccac gcccgttccg gtaactatca
     1621 acttgagtcc aacccggaaa gacacgacaa atcgccagtg gcggtagcca ttggtaacgg
     1681 atttagagga gttagtcttg aagttatgcg cctgttaagg ctaaactgaa aggacagatt
     1741 tggttactgc gctcctccaa gccagttacc gcggttcaaa gagttggtag ctctgagaac
     1801 cttcgaaaaa ccgccttgca gggcggtttt ttcgtttcca gagcaagaga ttacgacgca
     1861 acggacaaga tctcaagaag atcatctgtg atattcgaca gatatgggat aaaggattgc
     1921 aacgccaaga gtatatgaga catagcagca gccaccacca ccatcacaga atcaagccag
     1981 ttgcggcacg aaaggaaaga accgaactgt gcgacggtcg ctacgctctc cgtaaatttt
     2041 gtatacctac cacggagaca taaagtttct attgctgatt cgccttaaaa agggaaaaat
     2101 cctatttttt ctaaatggat ataaccttat gggaagctac gtagaccaat cattgacaag
     2161 aaatgaatcc gtaat
//
