LOCUS       NZ_CP119755             3560 bp    DNA     linear   CON 19-MAY-2024
DEFINITION  Superficieibacter sp. HKU1 plasmid pHKU1, complete sequence.
ACCESSION   NZ_CP119755
VERSION     NZ_CP119755.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33581340
            Assembly: GCF_029319185.1
KEYWORDS    RefSeq.
SOURCE      Superficieibacter sp. HKU1
  ORGANISM  Superficieibacter sp. HKU1
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Superficieibacter.
REFERENCE   1  (bases 1 to 3560)
  AUTHORS   Chen,J.H., Chung,T.W., Yuen,K.Y. and Cheng,V.C.
  TITLE     Complete genome of Superficieibacter hongkongensis, a novel
            Enterobacteriaceae family member isolated from a hospitalised
            patient
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3560)
  AUTHORS   Chen,J.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-MAR-2023) Microbiology, The University of Hong Kong,
            Pokfulam Road, Pokfulam 000000, Hong Kong
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 03-MAR-2023
            Assembly Method                   :: Unicycler v. 0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 80.0x
            Sequencing Technology :: Illumina iSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029319185.1-RS_2024_05_19
            Annotation Date                   :: 05/19/2024 04:58:34
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,634
            CDSs (total)                      :: 4,524
            Genes (coding)                    :: 4,447
            CDSs (with protein)               :: 4,447
            Genes (RNA)                       :: 110
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 23 of 77
            Pseudo Genes (incomplete)         :: 48 of 77
            Pseudo Genes (internal stop)      :: 24 of 77
            Pseudo Genes (multiple problems)  :: 15 of 77
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP119755.1.
            Bacteria and source DNA available from Queen Mary Hospital, The
            University of Hong Kong, Hong Kong.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3560
                     /organism="Superficieibacter sp. HKU1"
                     /mol_type="genomic DNA"
                     /strain="HKU1"
                     /isolation_source="wound tissue"
                     /host="Homo sapiens"
                     /db_xref="taxon:3031919"
                     /plasmid="pHKU1"
                     /geo_loc_name="Hong Kong"
                     /collection_date="2022-10-19"
     gene            <1..564
                     /locus_tag="P0H77_RS23155"
                     /old_locus_tag="P0H77_23160"
     CDS             <1..564
                     /locus_tag="P0H77_RS23155"
                     /old_locus_tag="P0H77_23160"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_276165226.1"
                     /translation="PVTRIFHKQVTMASTEEKLLTLLLSAEHLKEAAKEQQKAVADSLA
                     VARETLKGYREISDSVAQQVRDEVRQEVQKMDVAGLIGERISADFQRLEKSVGNMKINA
                     DALDKEISIIRSNIIAEYNTLRGYSWKWFAGVAVAFVVLIFATSWFVKTELQDNYNASA
                     AVYQKVADLEKLLTTEQKPEKKKN"
                     /name="hypothetical protein"
     gene            complement(2103..2489)
                     /locus_tag="P0H77_RS23160"
                     /old_locus_tag="P0H77_23165"
     CDS             complement(2103..2489)
                     /locus_tag="P0H77_RS23160"
                     /old_locus_tag="P0H77_23165"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_045282373.1"
                     /translation="MRISNVEWLKKRIAFIRKLGEKTARQRQIIDLLDDEASLSETERR
                     LLHVLATAEKNALQERDAAQKKAVQARISGQKNRRERNHRLFLAAGLMIDAGLVDTKTG
                     ELNFDHEKLLTALKRVRYDLETSA"
                     /name="hypothetical protein"
     gene            2656..>3560
                     /locus_tag="P0H77_RS23165"
                     /old_locus_tag="P0H77_23170"
     CDS             2656..>3560
                     /locus_tag="P0H77_RS23165"
                     /old_locus_tag="P0H77_23170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_276165227.1"
                     /translation="MATYHLSVKFGGKGKALAHASYITREDKFSQRQDLEHTEHGNMPE
                     WARDEPAHFWQAADAFERANGSTYREIEIALPRELNEAQRLALVRDFVKQETGDKHAWT
                     FAIHNPKASIDGGEQPHAHIMMSQRVNDGIERSPEQYFRRYNAKFPARGGARKDSGHNL
                     TPTEQKQALKALRERWERTHNAHMKRYGFEQGFIDSRSLKTQGIDRKPEQHLGFEAAGR
                     LDDSQRQDIKDSRTFSVVDVPEQAKHIDHSDRSWMNASGIEVNRKELVRSLTHDISQQY
                     GREMAARVTKQGNVEIERVKS"
                     /name="MobA/MobL family protein"
     Typing          2657..3558
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.017"
                     /coverage="97.0"
                     /evalue="0.0"
ORIGIN
        1 cctgtcacgc ggattttcca taagcaggta actatggcga gcaccgaaga aaaacttctc
       61 acactcctgc tgtcggcgga gcatctgaaa gaggccgcaa aagagcagca gaaagccgtg
      121 gcggattcgc tggcggtggc aagggaaacc ctgaaaggct accgggaaat atcggacagt
      181 gtggcacagc aggtaaggga tgaagtccgg caggaagtgc agaaaatgga tgttgcgggg
      241 ctgattggcg agcgtatcag cgctgatttt cagcgtctgg aaaaatccgt cgggaacatg
      301 aaaatcaatg cggacgcgct ggacaaggaa atttccatta tccgcagtaa catcatcgcg
      361 gagtacaaca cgctgcgggg ttacagctgg aagtggtttg ctggggttgc ggttgccttt
      421 gtcgtactga tatttgccac aagctggttt gtgaaaacgg aactacagga caattacaac
      481 gcgtctgctg ccgtctatca gaaagtggca gaccttgaaa agctgctgac aacggaacag
      541 aaaccggaaa agaaaaagaa ctgacgcgct gcgcttgtcc aacgcctcac gttcgcacaa
      601 taaattgcgc acccgttcac cgttttcagc cgagtttggg gcgtcttttg agacttccgg
      661 cctgaattca ggccggaagt tctcgccagt cagtcaggtg catggttatg catggggctg
      721 aaaatcacgg tatgcgattc tgagcggttt tcggtgagaa gccgggggtt tttatggctc
      781 aggacgtaaa accgccctga gcgcgtttca gcggtgcgcg taacggatgt tatggtaaat
      841 ccggtggctt tgacgtgcct gccgttgtgt accgtcgtga gtgaaaataa ttatattgtt
      901 cgaagaacag cgctttttgg ccggagaaaa gcagttctgc aaacgatggt atatcgatat
      961 gagttctttt ggcattaatc caggcaagac gccgggcaat aagcgtaata ttccggatgt
     1021 tacttatttc catttctgtc aacagcatcc ccccccacgc cggagaataa aaaagccgcc
     1081 tgttccatcg gcaagcccta catcaaggga aactacgtct tacgattcgt tttgaaccgg
     1141 gacgctttgt tgctgcgaat cactaaccag ataatccacg ttttgtgagt gggtttaggt
     1201 taaggcttca atagaacaat aatagcgtta agtgattagg gcaacctgtg attgctaaaa
     1261 tgatgaagtc ttcacatcat ttcggtgaag gcgatatgtg ttacaccacg tattgagaga
     1321 cctgcatgcc ctttacaggt gaacgggaac gggaatactt tttctcccgc gaatttgatt
     1381 tatgtggttg tgacattagt tatgagatag agccaccagt gtgatgaact cacactacaa
     1441 attcgttcag cactaaatca gaattcgatg caaatctcgg acgctggatc atcacagtga
     1501 atccttctat aacccggatt tgagagtcgc aaacccatat tagggcaaag aaagcctaat
     1561 gcccccgtgg tgggtacacc agaaaacggg gagcgaagcg accagcatca ggccgttcgt
     1621 atgctgcttc gattttgtgg gtgttgcgcc agaccttggc aatcacgctt caccgcaacc
     1681 gctgccttca ctctcacttt atcaggtacg ttattggtta acgtgagacc gggtagagcc
     1741 agcttctttc ccgagctggt caggttccca ccgcttgcct gtttatcctg ccggagtccg
     1801 gggcgtagac ctgagagtca aggtgcagat atgggtttaa tgtcgttgaa tggtattaag
     1861 ctggtagtga cattcctagc cagccctgct aggatttgat tgtgacgtct gatcctggca
     1921 ggtatctgca agaattagag tactcaagcc ccgtgattct gtcacggggc ttttgtacat
     1981 ctggagcaag aaaattcatg ctcctatccg aaaatcccta ccgctcgccg cagccgaacg
     2041 accgagcgac gcgagtcagt gagcgaggaa gcggcatttc tccggccttg cagaatgcac
     2101 gttcacgccg atgtttccag atcgtagcgt acccgtttca gcgcagtcag taatttttcg
     2161 tggtcaaaat tcaactcacc cgtttttgta tcaaccagtc ccgcgtcaat catcagacca
     2221 gccgccagaa acagtctgtg attgcgttcc ctgcggtttt tctgccctga aatccgcgcc
     2281 tgaaccgcct ttttctgtgc ggcatcccgt tcctgcaacg cgtttttttc agcggttgcc
     2341 agaacgtgga gcagtcgtct ttcagtctca ctgagcgaag cttcatcatc cagcagatcg
     2401 ataatctgcc gttgccgtgc cgttttttct cccagctttc tgatgaaggc tatgcgcttt
     2461 ttaagccatt cgacgttact gatccgcatc gtttaacttc cccatcccga tatttccgac
     2521 ggggaaagta tataacttgc ggtcagaagt cgcatgactt atctttactc ataattcttt
     2581 aaattagagt aaagcgcact tatatgtttc tccctgcggg cagaaacagt gcgccctgcc
     2641 gggggctgac acaacatggc aacgtatcat ctcagcgtga aatttggcgg caagggtaaa
     2701 gcccttgctc atgccagtta cattacgcgg gaagataagt tcagccagcg ccaggatctc
     2761 gagcacaccg aacacggcaa tatgccggaa tgggcgagag atgaacccgc ccatttctgg
     2821 caggctgcgg atgcgttcga acgtgccaac ggttcaacgt acagggaaat tgagatcgct
     2881 ctaccccgcg agctgaatga agcgcagcgg ctggcgcttg tccgggattt tgtgaagcag
     2941 gaaacgggcg acaaacatgc atggacgttt gcgatccaca atccgaaagc cagcattgac
     3001 ggcggcgaac agccgcacgc ccatatcatg atgagccagc gcgtcaatga cggtattgag
     3061 cgcagtcccg aacagtattt caggcgctat aacgccaaat ttccggcgcg tggcggcgcg
     3121 cgcaaggact cagggcataa tttaacccct acagaacaaa aacaggcact gaaagccctg
     3181 cgggagcgct gggagcgtac gcacaacgcg catatgaaac gatatggctt tgagcagggt
     3241 tttattgata gccggtcact gaaaacacag ggtatcgacc ggaaaccgga acagcatctc
     3301 ggttttgaag cagccggacg actggacgac agccagaggc aggatattaa agacagccgg
     3361 acgttttcag tcgtggatgt gcctgaacag gcgaaacata tcgaccacag cgaccgtagc
     3421 tggatgaatg ccagcggtat cgaggtaaac cggaaggaac tggtcagatc tctgacgcat
     3481 gatatctcgc agcagtacgg gcgggagatg gctgcacggg tcacaaaaca gggaaatgtt
     3541 gaaatagagc gcgtgaaatc
//
