LOCUS       NZ_CP119115             4971 bp    DNA     circular CON 05-MAY-2024
DEFINITION  Staphylococcus aureus strain GENOMIC22-002 plasmid pCFSAN126947_02,
            complete sequence.
ACCESSION   NZ_CP119115
VERSION     NZ_CP119115.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33425966
            Assembly: GCF_029094145.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 4971)
  AUTHORS   Hoffmann,M., Luo,Y., Sorensen,L.H., Pedersen,S.K. and
            Hendriksen,R.S.
  TITLE     Results of the 2020 Genomic Proficiency Test for the network of
            European Union Reference Laboratory for Antimicrobial Resistance
            assessing whole genome sequencing capacities
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4971)
  AUTHORS   Hoffmann,M., Luo,Y., Sorensen,L.H., Pedersen,S.K. and
            Hendriksen,R.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-FEB-2023) CFSAN, US FDA, 5001 Campus Drive, College
            Park, MD 20740, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Microbial Genome Analysis v. SMRT Link
            11.0.0.146107
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 700.0x
            Sequencing Technology             :: Pacbio Sequel IIe system
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029094145.1-RS_2024_05_05
            Annotation Date                   :: 05/05/2024 05:46:48
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,911
            CDSs (total)                      :: 2,829
            Genes (coding)                    :: 2,729
            CDSs (with protein)               :: 2,729
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 100
            CDSs (without protein)            :: 100
            Pseudo Genes (ambiguous residues) :: 0 of 100
            Pseudo Genes (frameshifted)       :: 50 of 100
            Pseudo Genes (incomplete)         :: 45 of 100
            Pseudo Genes (internal stop)      :: 26 of 100
            Pseudo Genes (multiple problems)  :: 18 of 100
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP119115.1.
            Bacteria and source DNA available from Sorensen, Lauge Holm,
            lahoso@food.dtu.dk.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4971
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="GENOMIC22-002"
                     /isolation_source="EQA test strain"
                     /db_xref="taxon:1280"
                     /plasmid="pCFSAN126947_02"
                     /geo_loc_name="Denmark"
                     /collection_date="2022"
                     /collected_by="DTU National Food Institute"
ORIGIN
        1 gtactttatt accttcttca tttttcatct tattatagtt tttttcacaa cttaccatca
       61 ctaattcttt accttttaaa aatccttcta catcaaaaat ttcaaagtta tctaatgctt
      121 ttaaacctgc catttatatc gctcctatac tattttttat ttttgttatt acatacttac
      181 tactgatcca aattaattta ctaattaatt taaatgtctc aactactaat ctgatacaaa
      241 atatcaatac atacttcata agctttatac ataacttgtt aatctttacc attatcttta
      301 ggctccaaag taagtgaagt ttttcttgga ttatcacttg aatcatcttg ttttctagcc
      361 aacatcaaat catgctcaat atcttctttt tctctaatta aatttatttt atttgaaagt
      421 atataacata tcatgtctaa tgttgctatt acatcatttt ctaattctga taatctattc
      481 aatttttcaa gtattgtcac gctttttact tcttccaatt gaatcacacc tttttttgaa
      541 tataactaac tgataaacct ctaatctgac taatgaaatt caaatgaaat tcacgttgtt
      601 ctaattcatg aatataatcc gaataatctt catcgaaata tttatcaaat aaaattaaaa
      661 atcgtttgtg attacttatc attttttgtt gctcttttaa catttcaaat aacatctcta
      721 aatttttatc ataattttta attggtagat taagattttt tgataaataa gatgaacaat
      781 tttctataat ttcaaattgt tttttcatta aaatgtcagt gtctttaaac gtattcgcta
      841 aataattttt aatttgatta tctgataatt gatacattag ctaacctcct ttttttaggt
      901 taattacatt atgaatcgat tcacatcggt gcgtaaatat ttttacatca atcgttatat
      961 gtgttaaaat actgttaaat caatatttaa taaaaaactt taaaattatt ttaatgtgat
     1021 tcatcggtgc attaatgatt ttattaaaaa cgaaaaatag gaggttttca aaatgacaga
     1081 attttattca ataaaagaag ttgctaattt atgtaataaa cacaaatcaa cagtacaaag
     1141 aaaattaact aaaaaggtat tagaagatat aaataatcaa atgttagcaa tttataaaaa
     1201 agcagaagga tataatggca aaacacaact tttctttaat gaatatgcag taaaatatat
     1261 tatgacttta tttgataaag aattagatta ttattcaatc gacgacatag atttatatga
     1321 actaagcaaa agatttaaca ataaagaaca taacaaaaat attaataata ttgatgacct
     1381 aattgattac attaataacg ataaaattag ctataaagat aaattagata aaataactaa
     1441 ccttaaaaat catatgaata aactaaaaga tgaaaatatt cgtcaaaaaa tagatttaga
     1501 tagataccaa caacaagtag accaaatgga aatacacatt cattatcaag atgaagaaat
     1561 aaaatattta cgtgatgaag ttttgaaaga aataaaaaaa cgatgaccca ttacttttta
     1621 aagaatggat catcgttctt atgatttttt atcattgttt tatggtcttt atttaattta
     1681 actctttctt tcatatcttt tttcattttt gaaactaatt catcaaatac atcttcacca
     1741 taagctacat aaaacatttt caaaaaagtc attgtaccgt ttttaaataa attctgatat
     1801 tttaaatcaa attcagtcgt attattagat tcatgaccgt ctacatgcgt tatttcgcta
     1861 ttattactat ctattatctg ctgataaaaa tcggcatact ctaaaattgg ataaccttta
     1921 tcatcatatg taataatttt aaagaattta aagaattgga taaacacacc atataataat
     1981 gataaaaatt cattattatc atcatcacaa tcaacaaaaa gctttgttat attatgagcg
     2041 tatgtgcttt ttaactctaa ttctaatctt gtccaattac tacaatttaa agctttaaat
     2101 gaatcaatcg tatttttaga gattgattct tcttttttat catacacacg taaaaacgaa
     2161 tcgcctgtac gactattcac ataaatagtt tgtattactc cactacttcc aagcgttcta
     2221 attttatcat tggttactac tctattacct ttgtttttaa ttaatatttc atcatatttt
     2281 atttgatttg ctagattact aactaataaa ttttcatcta taaaatcaat tgctatatct
     2341 aatcttgata atcttatatc aaatacagaa ctcaattttt ttaaaatatg atgaacgtta
     2401 atttcacatt gctttttaat tttatacgat tttaaatatt ctcttaacgc tcgagcttta
     2461 aattctatag aaacaccatt cgaaatattt tcagaattat acttataaaa tatttgtgac
     2521 ttttcaaagc cataataata aactgtatcg tagtttcgaa caccacgacc atattcaact
     2581 gcttgactat aaacttcttc aatttctaat aactgctcaa atacttcacg aacatgttca
     2641 gaatatgaaa caacatcatc gttcatatat gataataatt tcgaatttgg caatattgtt
     2701 aatgtgaatt ggtctacttt tacactaatc atcaaaaaac ctcctaaacc gttgaaaaac
     2761 gcttaataac ggggtttagt tgaggtcgtc taaacaaatt gagtggttaa cgataattct
     2821 ttgcccccct tattaaaagg aggggggcaa aaaagcgctc aagcttatgc gtctcgccaa
     2881 acctttttca aagttttggt tggtcgacgc aacgctttcg caaatgcccc caaactcttt
     2941 actcagttgg gaaacaattg tataattaac acatcaaaaa attaaatcac aactaaacca
     3001 cctgcaacgt aaacatcggc caaaatgttt ttacgttgct ttttttattt tagcacaatc
     3061 acaatcaatg ttaagcgtaa tatcaacgat aatctccgat ttattccaat tgcttttttg
     3121 tcgtcgattc tgcgcctttc aaactttcca aagtcgtacc accaggcaaa attcgccctg
     3181 gtgggccaac taggaatagt ttaaatgaaa ggctctcaac gacaaaaaat tttctcggca
     3241 taaattctca attatctcga ttttgcattt ctatcaaagt ttcaaggttc gaaagcgtta
     3301 aatcaaattt gaatgtcggc ataaataaaa aacctggttt attacgtgta tctgcttttg
     3361 taaaatacgc ctgacctggt ttcaatttca catcagatat atcttgcgca ctgaacatga
     3421 cttctctagt ttgtctatct gaattaccta aaaccatttt aaagcttaat tggtcacgta
     3481 tacctgtacc attaaacgaa ttagcgtttg cttgttgtaa actaatcatt aatgaaacac
     3541 ctgtactgcg acctttcatt gcaatattac ctaaagcact ataaaatcta tctcgtttct
     3601 ctttttttaa tcctgctaaa tcatttgtta atgctcctaa ctcatcaatt actaaacaaa
     3661 tattattcca acctgcattt ttgaaacctg cttcaatatc ttttttaaat cggtcatcat
     3721 tttttaaaat atcttgtctt tcaagcatta tattttcaac tttctcaacc aattcaaaaa
     3781 tttggtcaga ttctctagga ttttcatcgg ctacatgatc gacacctaaa actgtatcta
     3841 attttgttaa agcttgtttt ctatctataa caaataattc atgacccttt aatttcaaag
     3901 taaacattaa atgatacagt gaatacgatt taccagaacc agtttgacca cttactaaca
     3961 tatgtggcgt tttagctaaa ttaatgtgaa caccgttttt cataatcggt attatatgat
     4021 tttcggttga attaacaacg tccaaataat cttgcattgt ttcaaatata tattgattat
     4081 ctgctttcaa atcaagtatt tcagcaatga aatatttacc tgttatatca cgttgaaaag
     4141 tatcaaccac acgaccattc tctagtacaa cagtcatttc atctttaaat gattctaact
     4201 tatcgtttaa acctgctaaa ttcataattc tgatttcatt atcgctaata attttaattt
     4261 ttggcgtttt cgcatactga atttttttat cgtctaatga ttcaacaaca atatacatct
     4321 tatccattac taaagcttta tcaattcgat tctttaataa atgattttta aaagataaga
     4381 gaggattata attcttcata atccccccgt ccatcaaagc tattaatata acaaataagc
     4441 tataaatacc cagactcgcc aaaagtccaa atgttaattt atcaaaccag tgtccaatcg
     4501 gttcaaaggt aagattttca atatgctttg atatttcaaa catcaaaaat ttaaataact
     4561 gaacaaccaa aataatagcg atgaatatca gaaaaacata atacttcaag tgtcgtcgtc
     4621 gtgaccttaa agaaattgtt tttaactgat tcatttaatc acactcctat tgttgtggtt
     4681 gttttctttc taacttaact aaatcatctg caacgacaat caaattacta ccaaaatgca
     4741 ttgtttcact aggtttcaaa ccttttatca taactttttc gccaacgcta aaatcatcaa
     4801 atttttctgg ttctaattct ggtttatcaa taaacaaaat aaaactttta cggaaattaa
     4861 cacctttttg cttttttcgt tcttttgtgt tgaaatcaaa tacttcatat tcagcattat
     4921 ccttatcaat gttgatttca aattttaatc cacgtggact atttgggtct g
//
