LOCUS       NZ_CP118987             2216 bp    DNA     circular CON 30-MAR-2024
DEFINITION  Staphylococcus equorum strain DSM 20674 plasmid unnamed5, complete
            sequence.
ACCESSION   NZ_CP118987
VERSION     NZ_CP118987.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33336506
            Assembly: GCF_029024965.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus equorum
  ORGANISM  Staphylococcus equorum
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2216)
  AUTHORS   Romano',A., Ivanovic,I., Segessemann,T., Vazquez Rojo,L., Dreier,M.,
            Sesso,L., Vaccani,M., Schuler,M., Frei,D., Frey,J.E., Ahrens,C.H.,
            Steiner,A. and Graber,H.U.
  TITLE     Elucidation of the Bovine Intramammary Bacteriome and Resistome from
            healthy cows of Swiss dairy farms in the Canton Tessin
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2216)
  AUTHORS   Romano',A., Ivanovic,I., Segessemann,T., Vazquez Rojo,L., Dreier,M.,
            Sesso,L., Vaccani,M., Schuler,M., Frei,D., Frey,J.E., Ahrens,C.H.,
            Steiner,A. and Graber,H.U.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-FEB-2023) Food Microbial Systems, Agroscope,
            Schwarzenburgstrasse 161, Liebefeld 3097, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 01-MAY-2021
            Assembly Method                   :: Flye v. v2.8.1-b1676
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 5351x
            Sequencing Technology :: Oxford Nanopore + Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029024965.1-RS_2024_03_30
            Annotation Date                   :: 03/30/2024 07:42:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,664
            CDSs (total)                      :: 2,578
            Genes (coding)                    :: 2,548
            CDSs (with protein)               :: 2,548
            Genes (RNA)                       :: 86
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 16 of 30
            Pseudo Genes (incomplete)         :: 11 of 30
            Pseudo Genes (internal stop)      :: 10 of 30
            Pseudo Genes (multiple problems)  :: 6 of 30
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP118987.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2216
                     /organism="Staphylococcus equorum"
                     /mol_type="genomic DNA"
                     /strain="DSM 20674"
                     /isolation_source="Skin of horse"
                     /host="Horse"
                     /culture_collection="DSM:20674"
                     /type_material="type strain of Staphylococcus equorum"
                     /db_xref="taxon:246432"
                     /plasmid="unnamed5"
                     /collection_date="1984"
     gene            complement(1..324)
                     /gene="qacG"
                     /locus_tag="PYW44_RS13330"
     ARG             complement(5..324)
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="quaternary ammonium compound efflux SMR
                     transporter QacG"
                     /tool="amrfinderplus"
                     /drug_class="QUATERNARY AMMONIUM"
                     /identity="100.0"
                     /coverage="100.0"
     gene            601..1605
                     /locus_tag="PYW44_RS13335"
     CDS             601..1605
                     /locus_tag="PYW44_RS13335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020368559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_078098897.1"
                     /translation="MHSYTTRCIDENQDNETLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNVLEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQRVI
                     EEVVKEKPKARWLFLTLSTRNAIDGDHLEQSLKHMSKAFNKLKMYTKVKKNLIGFLRST
                     EVTVNKNDGSYNQHMHVLLCVESAYFKKQGQYIKQSEWVDLWQKALQVDYRPVANIKAI
                     KPNQKGDKDIQAAIKETSKYSVKSSDFLTDDDERNQEIVNDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDAEDGNLINTSDEDKTTDEEEKAHSITAIWNFEKQNYYLKDLKR"
                     /name="protein rep"
     Typing          602..1605
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.532"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tcaatggctt tctccaaata catttaagag cactacacct ataacaatta agccaataga
       61 aattatacta attaaattaa cattttcttt aaaaacgata actgagatta ttgttgttaa
      121 tactaatcct agacctgccc atgttgcata agttatattt aagggcaaaa attttattgt
      181 taaacttaaa aaataaaagc aaattccaaa cgaaagtagt gtacctaatg ttggccataa
      241 ctttgtgaaa ccctctgatg tttttaaaaa actagttccg attatttctg ttgcaattga
      301 gataaataaa tataaataat gcattaagct tctcctttaa tttctatttg atagcttata
      361 ttttaactta tattaagtga aagaaaaatt tttaagattt gtattttaaa acgagttgaa
      421 aacgagtttc ttcttgtctt gatactatat agaaataatt caaagatata aaaagtcgtt
      481 tgaattttga tattacagcg tttttagcta tttttaacgt ggaaaataaa atttgacata
      541 aaaaaactcc agtaataaga ttaaattgtc gagataaaat caaatactgg aggtttttat
      601 atgcattctt atactactag atgtatagac gaaaatcaag ataacgaaac attaaaagat
      661 atgacgaaaa gtgggaaaca acgcccatgg agagagaaga aaattgataa tgtaagttat
      721 gcagatatac tagaaatctt aaaaattaaa aaagctttta atgtaaaaca atgtggtaac
      781 gtcttagagt tcaagccaac tgatgaaggt tatttaaaat tacataagac atggttttgt
      841 aagtcaaaat tatgtccagt ttgtaattgg aggcgtgcta tgaaaaatag ttatcaagct
      901 caaagagtga ttgaagaagt ggtaaaagaa aagccgaaag cacgttggtt atttctcaca
      961 ttatcaacac gaaatgcaat agatggtgac catttagaac aaagtttaaa acatatgtct
     1021 aaggctttta ataaattaaa aatgtataca aaagttaaaa agaatttaat tggattttta
     1081 cgttcaaccg aagtaacggt taataaaaat gacggtagtt ataatcaaca tatgcatgtt
     1141 ttattatgtg ttgaaagtgc gtattttaaa aagcaaggtc agtatataaa acaaagtgag
     1201 tgggtcgatt tatggcaaaa agcattgcaa gttgattatc gaccagtcgc aaatatcaaa
     1261 gcgatcaaac cgaatcaaaa aggcgataaa gatattcaag cagctatcaa agagacttca
     1321 aaatactcgg ttaagtcatc tgatttttta actgatgatg atgaaagaaa tcaagaaatc
     1381 gtgaatgatt tggaaaaagg tttataccga aaacgtatgt tgagttatgg tggattgctt
     1441 aaacaaaaac ataaaatttt aaatttagac gatgccgaag atggcaattt gattaataca
     1501 agtgacgaag ataaaacaac agacgaagaa gaaaaagcac actcaattac ggcaatttgg
     1561 aattttgaaa aacaaaatta ttacttaaaa gatttgaaac gttagcttaa aagctagcgt
     1621 ttttttatgc ttttttgccc ctgcgggaac tatatcgttc aacctgtatg gttgaccagt
     1681 ttttatgcca atttttaaat ttgcatgtaa ctgggcagtg tctaaaaaat tagtcactgg
     1741 ttttgctcaa atttttgttt gtggaattag aatatattta tttggctcat atttgcgttt
     1801 taaaagcttg tgtaggtttt taggtataaa actatatgat ttacccttaa atctttaaaa
     1861 tgccccctta gaattcaaaa taaaggtatt taaaatttgg tatctttgaa aatttaaaaa
     1921 taaaaaatgc taagtgcaac aataaaaaag ttgtacttag caataacaca aataatagaa
     1981 aagctaatta atttaatttt tgagtactat atttttccta ctcaatttgc ttaattataa
     2041 cataattaaa gcatgcattt atgccgagaa aatttattga tgttgagaag aacccttaac
     2101 taaacttgca gacgaatgtc ggcatagcgt gagctattaa gccgatcatt cgacaagttt
     2161 tgggattgtt aagggttccg aggctcaacg tcaataaagc aattggaata aaataa
//
