LOCUS       NZ_CP118404             1240 bp    DNA     circular CON 29-APR-2024
DEFINITION  Klebsiella pneumoniae strain 2020CK-00223 plasmid unnamed6, complete
            sequence.
ACCESSION   NZ_CP118404
VERSION     NZ_CP118404.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15907158
            Assembly: GCF_028872175.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1240)
  AUTHORS   Young,E.L., Hergert,J., Casey,R. and Oakeson,K.F.
  TITLE     2020CK-00223
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1240)
  AUTHORS   Young,E.L., Hergert,J., Casey,R. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-SEP-2022) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 20.0x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028872175.1-RS_2024_04_29
            Annotation Date                   :: 04/29/2024 05:49:26
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,523
            CDSs (total)                      :: 5,398
            Genes (coding)                    :: 5,226
            CDSs (with protein)               :: 5,226
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 172
            CDSs (without protein)            :: 172
            Pseudo Genes (ambiguous residues) :: 0 of 172
            Pseudo Genes (frameshifted)       :: 61 of 172
            Pseudo Genes (incomplete)         :: 105 of 172
            Pseudo Genes (internal stop)      :: 24 of 172
            Pseudo Genes (multiple problems)  :: 16 of 172
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP118404.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1240
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="2020CK-00223"
                     /isolation_source="Tissue"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed6"
                     /geo_loc_name="USA"
                     /collection_date="2020-06-03"
     gene            316..825
                     /locus_tag="PWK27_RS27585"
                     /old_locus_tag="PWK27_27585"
     CDS             316..825
                     /locus_tag="PWK27_RS27585"
                     /old_locus_tag="PWK27_27585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000634347.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_023206179.1"
                     /translation="MIVASEHQAKLRQKEIQEIDKKASKEHEEAKKNSNFTQTYPKGWQ
                     RIRELVRDKQGAAAIGLYSFFAEHIDPTCGAVVCDQQFLANQMGVSTRTIRRWLDYLEE
                     KGALVRIPVAGKVCAYALDPHEVWKGYNTSKDYSAFVTKTLVNKDGEIKRRIMAMFSGE
                     ESGQEQ"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 caaggttaaa cgggcatttt gatcgtcaag gtcaagccgc taacgcggtc gcctatggcg
       61 aaccctgacc ctcaaaatgc ccgaccggag ggagggagct accttgaact ttggtgttgt
      121 ctgttggttt tcatagaaga gaatagagat aaataataag ttattgattt ttatagtttt
      181 ggttttttct gataggacac agctggtgtc cgcacgtgag gacacagctg gtgtccgcat
      241 gtggctggac ataggacacc acaagtccta tgatgggaca aaaatgtcct atcaaaaaga
      301 caccgaggga taaagatgat cgtagcttca gaacaccaag caaagctaag gcagaaagaa
      361 atacaggaaa tcgacaagaa ggcatctaaa gagcacgagg aggcaaagaa gaacagtaac
      421 ttcactcaga catacccaaa gggctggcaa cgcattagag agcttgtgag ggacaaacag
      481 ggtgctgccg ctataggtct ttactcattt ttcgctgaac acatagatcc tacatgcggt
      541 gcagtggtct gcgatcagca gtttttagct aatcagatgg gtgtttctac tcgaacaatt
      601 cgtcgttggt tagattattt ggaggagaaa ggtgctttgg taagaatacc agttgctgga
      661 aaggtttgtg cttacgcttt agatcctcac gaagtctgga agggatataa cacatcaaaa
      721 gactactcag cctttgttac caagacatta gtgaacaagg atggagaaat aaaacgccgg
      781 ataatggcta tgttttccgg agaggagagc ggtcaagagc agtagcgaag cgactcttga
      841 cggctcggaa cgacccccac cctcagaaag ggggatggtt cgccacagcg agccatcccc
      901 ataataagcc gccctttaag cagtagatcc cataaataaa taaaacagca catcactttt
      961 gtaatgtgcg gcattccttt gggactaaaa gaagttagcc aggaatgtaa tacagaaact
     1021 ttaccgacaa ggaggtcatc atgatcacgt caacaatcat cacaatcatc ggcttaattg
     1081 ggagtctcat aacgatttac cgagagatat acccgaagga taagcactaa ttagccagta
     1141 tacactccgc tagcggagtg actggttcag ggcttcgccc cgaaacccct gaaaaccgtc
     1201 aatcatggtg atggctcact acgcgagcca tcaccagata
//
