LOCUS       NZ_CP118194             2052 bp    DNA     circular CON 27-MAR-2024
DEFINITION  Klebsiella grimontii strain 2020CK-00211 plasmid unnamed5, complete
            sequence.
ACCESSION   NZ_CP118194
VERSION     NZ_CP118194.1
DBLINK      BioSample: SAMN15907146
            Assembly: GCF_028748965.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella grimontii
  ORGANISM  Klebsiella grimontii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2052)
  AUTHORS   Young,E.L., Hergert,J., Casey,R. and Oakeson,K.F.
  TITLE     2020CK-00211
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2052)
  AUTHORS   Young,E.L., Hergert,J., Casey,R. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-SEP-2022) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 20.0x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028748965.1-RS_2024_03_27
            Annotation Date                   :: 03/27/2024 02:05:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,171
            CDSs (total)                      :: 6,050
            Genes (coding)                    :: 5,863
            CDSs (with protein)               :: 5,863
            Genes (RNA)                       :: 121
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 187
            CDSs (without protein)            :: 187
            Pseudo Genes (ambiguous residues) :: 0 of 187
            Pseudo Genes (frameshifted)       :: 64 of 187
            Pseudo Genes (incomplete)         :: 132 of 187
            Pseudo Genes (internal stop)      :: 31 of 187
            Pseudo Genes (multiple problems)  :: 37 of 187
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP118194.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Klebsiella grimontii"
                     /mol_type="genomic DNA"
                     /strain="2020CK-00211"
                     /isolation_source="Tracheal Aspirate/Wash"
                     /host="Homo sapiens"
                     /db_xref="taxon:2058152"
                     /plasmid="unnamed5"
                     /geo_loc_name="USA"
                     /collection_date="2019-09-04"
     gene            join(1785..2052,1..8)
                     /locus_tag="PU992_RS30790"
                     /old_locus_tag="PU992_30790"
     CDS             join(1785..2052,1..8)
                     /locus_tag="PU992_RS30790"
                     /old_locus_tag="PU992_30790"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_085820589.1"
                     /translation="MPSKRPRTTLLLTDELMTAIRSLSDASGMTMSAIVVQFLEPSIPV
                     MKQLEQVVLEAKRGAAGNGRAIVGSILEGANKTLAELNREFGELDD"
                     /name="hypothetical protein"
     gene            1..1032
                     /locus_tag="PU992_RS30795"
                     /old_locus_tag="PU992_30795"
     CDS             1..1032
                     /locus_tag="PU992_RS30795"
                     /old_locus_tag="PU992_30795"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phage/plasmid replication protein, II/X family"
                     /protein_id="WP_274342539.1"
                     /translation="MIDWITAIVPCFHETPLDSGRITKINSSGELEWESLTAISVVGSH
                     DSSLRLKTHSVNDFGNGTHIYFDGNPVKFLQGHNLFGTDNLIPLLCCVLKKITSIPEFG
                     LNPTDFDVLSWEKGNFKLNRVDCTVMFDVGNTANALSWIRQAEMSATLSHRGRGQVTKG
                     STLYFGKSSRRSSVKFYAKGEEFQKHSHAAFLRLPALVDYANRGLRCEVVLRSLELNHR
                     GLSSGSAWDDLLPLQIVNDFIGRINMADITAITSEETENLPASLKAVYELWKMGHDIRA
                     MYPRRTFYRYRKGLMDALGIDIATVQYKQPDNVVPFIRIIEAKPMGVPDWAIGTDLYFD
                     GVI"
                     /name="phage/plasmid replication protein, II/X family"
     gene            1032..1361
                     /locus_tag="PU992_RS30800"
                     /old_locus_tag="PU992_30800"
     CDS             1032..1361
                     /locus_tag="PU992_RS30800"
                     /old_locus_tag="PU992_30800"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_143188793.1"
                     /translation="MSRYGDSARNVFEIYYETGLTLPLYLSRTTWSPTTLVVIKSIGGL
                     TSGKLSGMGRYPYFNEASVICDIYGPQPAFNVDCPGRGSYQWKLSPLRPSDFPSIDASR
                     SQIEI"
                     /name="hypothetical protein"
ORIGIN
        1 atgattgatt ggatcactgc tattgttcct tgtttccatg aaaccccctt agattctggg
       61 cgaatcacta aaatcaactc atccggtgag cttgaatggg agtctcttac cgctatttct
      121 gttgttggta gccatgattc atcattaaga cttaaaaccc attctgttaa tgactttggt
      181 aacgggactc atatttattt tgatgggaat ccagttaaat tccttcaagg ccataacctt
      241 tttggaacgg ataatttaat tccattgctt tgctgcgtat tgaagaaaat aacctctatt
      301 cctgagtttg gacttaatcc aactgatttt gatgttcttt cttgggaaaa ggggaatttc
      361 aagttaaacc gcgttgactg tactgttatg tttgatgttg gcaatactgc taacgcactg
      421 tcctggattc gtcaggccga gatgagtgcc actctttctc atcgtgggcg tggtcaggtc
      481 actaaaggat ctacgttata ctttggtaaa tcgtcgcgcc gtagctcagt gaaattctat
      541 gctaagggtg aggagttcca aaagcactct cacgcagctt tcttacggct tcctgcgctc
      601 gttgactacg ctaatcgtgg tttgcgttgt gaggttgttt tacgttcgct tgagcttaat
      661 catcgcggtc tttcctccgg ttctgcatgg gatgacttgc ttcctctgca aatagtaaat
      721 gattttatag gacgtattaa catggctgac attactgcta tcacttccga agaaaccgag
      781 aatttgccag cgtccctcaa ggctgtttat gagttatgga agatggggca tgacattaga
      841 gccatgtatc cgcgcaggac tttttatcgt tatcgtaaag gtcttatgga tgccttgggt
      901 attgatatcg ccactgtcca atataagcag cctgataatg tcgttccctt catacgcatc
      961 atagaggcta agcctatggg tgtacctgat tgggctattg gcactgattt gtattttgat
     1021 ggagttattt aatgtctaga tatggtgatt ctgctcgcaa tgtttttgag atttattatg
     1081 agacaggcct aactttgcct ctttatcttt ctcgtaccac ttggtctcct acaactttag
     1141 tcgtcattaa gtctattggt ggccttacct ctggcaagtt aagtggcatg ggtcgttatc
     1201 catactttaa tgaggcctct gttatttgtg atatttatgg ccctcagcct gcttttaacg
     1261 ttgattgccc gggtcgcggc tcttatcagt ggaagctaag ccctctgcgc ccttccgact
     1321 tcccctctat agacgcctcg cgctctcaga ttgaaatctg acagcgttcg ccgccgccga
     1381 ctcgtcaaat gctaaatcgg gggtcccttt agggttccga tttagtgttt gtacgacacc
     1441 ccgaataaat acacttcttg ctggtgtgtg ttacgtgcgc agcaggtgac acacacctgt
     1501 aagacgggtt ttaaggggtt ccgaccactg actaatccgc aacaccatga gtgacccccg
     1561 tttgaccacg ttgccgaatc gctgtgcagt gtctgtaata ctgcacattt gtgccaatct
     1621 ggcacactta ccctttaacg tgtctttgtt attcttttgt catacccctt cgcacacttt
     1681 gtgccaatct ggcccggctg cctgttgcca ccttcaaaac gatgtgtata ctactgtcat
     1741 accccacttc acactttgtc ttatatttaa gaaaggagtc cattttgcct tctaagcgcc
     1801 cgcgcaccac gcttcttctt actgatgagt tgatgactgc aatccgttct ctttctgatg
     1861 cgtctggtat gactatgtct gcaatcgttg ttcagtttct tgagccttct atcccggtca
     1921 tgaaacaact tgagcaggtt gttttagagg ccaaaagggg tgctgctggt aacggtcggg
     1981 ctattgttgg ttctattctt gagggtgcta ataaaaccct tgccgagctt aacagggaat
     2041 ttggagagtt ag
//
