LOCUS       NZ_CP117758             2496 bp    DNA     circular CON 25-MAR-2024
DEFINITION  Enterobacter hormaechei strain 2022CK-00700 plasmid unnamed8,
            complete sequence.
ACCESSION   NZ_CP117758
VERSION     NZ_CP117758.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32093416
            Assembly: GCF_028622735.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2496)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2023) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease Submission Group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 99.0x
            Sequencing Technology :: Oxford Nanopore GridION; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028622735.1-RS_2024_03_25
            Annotation Date                   :: 03/25/2024 02:00:25
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,271
            CDSs (total)                      :: 5,156
            Genes (coding)                    :: 5,050
            CDSs (with protein)               :: 5,050
            Genes (RNA)                       :: 115
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 106
            CDSs (without protein)            :: 106
            Pseudo Genes (ambiguous residues) :: 0 of 106
            Pseudo Genes (frameshifted)       :: 22 of 106
            Pseudo Genes (incomplete)         :: 79 of 106
            Pseudo Genes (internal stop)      :: 15 of 106
            Pseudo Genes (multiple problems)  :: 9 of 106
            Pseudo Genes (short protein)      :: 1 of 106
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP117758.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="2022CK-00700"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:158836"
                     /plasmid="unnamed8"
                     /geo_loc_name="USA"
                     /collection_date="2022-11-04"
     gene            135..320
                     /locus_tag="PTC84_RS26345"
                     /old_locus_tag="PTC84_26345"
     CDS             135..320
                     /locus_tag="PTC84_RS26345"
                     /old_locus_tag="PTC84_26345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032673404.1"
                     /translation="MTRQESAALNMAKFIRSQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEKDA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2038..2265
                     /locus_tag="PTC84_RS26350"
                     /old_locus_tag="PTC84_26350"
     CDS             2038..2265
                     /locus_tag="PTC84_RS26350"
                     /old_locus_tag="PTC84_26350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     Typing          complement(368..455)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="94.382"
                     /coverage="100.0"
                     /evalue="1.5000000000000001e-30"
     Typing          complement(944..1116)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="90.286"
                     /coverage="100.0"
                     /evalue="2.0600000000000002e-57"
     Typing          1041..1623
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="87.331"
                     /coverage="97.0"
                     /evalue="0.0"
ORIGIN
        1 aaaaaccaca acaaaccacc ccggaacccg tcagaaacgc gcctgttaaa ttttaacggc
       61 atgcatgact atgcaccaga atgacggcat gctcttttca cgcaaaaatc atcaccagac
      121 ggggaaaatc accagtgacc agacaggaat ccgccgccct caacatggcc aaatttatcc
      181 gctcacagac actcctcctc ctcgaacggc tcgaacagat ggatctggat gaggcagccg
      241 gctgctgtga gcatctgcac gatcaggctg aagcgcttta cgccatgctg aacgcacaga
      301 taggcgagaa agatgcgtga aaatcggtga acgggtgcgc aattcagtgc gcggccgtga
      361 ggcgatggcg gggtgtcggg gcgcagccct gaacggggta tttgtgatgc cgccgcgtgc
      421 gcggtattac aaatgcacat cctgtccggg agcggacacc gggaaacagc aaaaaaaacc
      481 gggcgacacg cccggaactc aatcaagtta gattactctc aatcttccat aacagcatca
      541 tggaacgacg accaccgtcc gtgacggccg cctggattga gtatggacaa aaattcagga
      601 aatgcttcag gaaatgctca ggacgaaacg taatgaatgc gaactgattc aagaaattcg
      661 agcatgaccg cccttgcggc cggttcggtt tcagacaaaa tctgccggta tgcatccagc
      721 atcatggctc cggcatcccc ttcggcacgc cggagctagc ccgaaacaac ggacacaagc
      781 aggtgtcgct catcatcatt aaaagtcatc agggctccgg aggaaaaacc aaacatggct
      841 tacctcctgt taacggcaac gcagaagaaa ggtttacagg gtagcgggca ggaatgaaaa
      901 aaatcgcagt cagaccagaa cggctgctta accggtacag gcgggttccg ggcgcagcgc
      961 cggaccagtc acgcagcgct agcggagtgt atactggctt aatatgttgg cacggatgcg
     1021 gatgtcagtt aagtgcttca tgtggcagga gaaaaaggcg gcatcggtgc gtcagcagaa
     1081 tatgtgatac aggagatatt ccgcttcctc gctcactgac tcgctgcgct cggtcgttcg
     1141 gctgcggcga gcggtacggg cttacgtaca gagcagaaat ttcctggaga atgccaggaa
     1201 ggttcttagc gaaaaaggca taaggccacg gcaaagccgt ttttccatag gctccgcccc
     1261 cctgacaagc atcacgaaat ctgacgctca aatcagtggt ggcgaaaccc gatgcggctt
     1321 aaagatacca ggcgtttccc cctggtggct ccctcgtgct cccccgcatt cctgcctttc
     1381 ggtttaccgg tgtcactccg ctgttatggc cgcggtttct cattccacgc ctgacactca
     1441 gttccgggaa ggcagttcgc tccaggatgg actgtatgca cgaacccccc gttcagtccg
     1501 accgctgcgc cttatccggt aactatcaac ttgagtccaa cccggaaaga cacgactaat
     1561 cgccattggc aacggccatt ggtaaacagg atgtgcgaga gatgtatcaa gagttcttga
     1621 agtggcggcc ttagtgaggc tacactgaaa ggacaaattt ggtgacatgt ctcgcacaag
     1681 actgttacca cggttagggg atctgccagg attacctaac cttcgaaaaa ccacctgcca
     1741 gggtggtttt ttcgtttaca gggcaagaga ttacgcgcga aaaaaaagga tctcaagaag
     1801 atcctttata aattagacat ccaacctcac aaagaggaat acttaaatca tcttggtata
     1861 tgtatctgct ggattacatc tcatataagc ctcctccccg cttgacacca cactttgacc
     1921 atagcacctc gcgcctaact cgatatacag cccaccatca agcctctttt cacataaaaa
     1981 ataacctata gttagatggt tagtgaccaa aactgatatg gataaaagga gctggctttg
     2041 aaaaagattt ttgtttcagt gttcgcagcg gcagttgcgc tttcagccct caccggctgc
     2101 acgcgcacaa gctatgccat acacaccaat gacggtcgca ctattgtcag cgacggcaaa
     2161 cctaaagaat cagactcagg cctgcttggc tatacagacg cgaatggtgt caaacagcag
     2221 atcaataaaa ccgacgttaa agaagtctcc gaaattccgc actgagcata ttctccgaaa
     2281 aaggccgcta atgtggcctt tttctttacc tgtggttctc cgccaaaatc ccagcaaatt
     2341 gcatcaccaa agctaaaagc tttcagggtt gtctaaaaag cacaagacat aagaggaagt
     2401 gcggtatttt ataatcaagc ccccaagaat ttaccataac atccgttgcc cgcaccgcct
     2461 cagacgcgct cagcgcgttt ctgacggaac catgac
//
