LOCUS       NZ_CP117757             3223 bp    DNA     circular CON 25-MAR-2024
DEFINITION  Enterobacter hormaechei strain 2022CK-00700 plasmid unnamed7,
            complete sequence.
ACCESSION   NZ_CP117757
VERSION     NZ_CP117757.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32093416
            Assembly: GCF_028622735.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 3223)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2023) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease Submission Group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 99.0x
            Sequencing Technology :: Oxford Nanopore GridION; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028622735.1-RS_2024_03_25
            Annotation Date                   :: 03/25/2024 02:00:25
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,271
            CDSs (total)                      :: 5,156
            Genes (coding)                    :: 5,050
            CDSs (with protein)               :: 5,050
            Genes (RNA)                       :: 115
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 106
            CDSs (without protein)            :: 106
            Pseudo Genes (ambiguous residues) :: 0 of 106
            Pseudo Genes (frameshifted)       :: 22 of 106
            Pseudo Genes (incomplete)         :: 79 of 106
            Pseudo Genes (internal stop)      :: 15 of 106
            Pseudo Genes (multiple problems)  :: 9 of 106
            Pseudo Genes (short protein)      :: 1 of 106
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP117757.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="2022CK-00700"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:158836"
                     /plasmid="unnamed7"
                     /geo_loc_name="USA"
                     /collection_date="2022-11-04"
     gene            complement(join(2345..3223,1..615))
                     /locus_tag="PTC84_RS26325"
                     /old_locus_tag="PTC84_26325"
     CDS             complement(join(2345..3223,1..615))
                     /locus_tag="PTC84_RS26325"
                     /old_locus_tag="PTC84_26325"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_273961874.1"
                     /translation="MIVKFHPRGRGGGAGPVDYLLGKDRQRDGASVLQGKPEEVRELID
                     ASPYAKKYTSGVLSFAEQDLPPGQREKLMASFERVLMPGLDKDQYSVLWVEHRDKGRLE
                     LNFLIPNTELLTGKRLQPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRVLVSPSAL
                     PEAKQEAAQAITSGLLALASSGELKTRQDVTEALESAGFEVVRTTKSSISIADPDGGRN
                     IRLKGAIYEQSFNAGEGLRAEIESAAADYRRDAESRIQRAREVCQSGTERKREENQRRH
                     PRPRPEAVLSHEPAHERDAAHGQPDVADHRSGLRAADSVERGHSVVAGAADTRELYDHP
                     GAEEHAGHAVREEQRRTALDLRRAETPLREGEPGSGTVRRGLELDDTGGEIAHDGAGKT
                     VAERIRAATAGLLEKAGRVGERLRGMADDVWSYSTGERGAERARHGLEQAGAEFERAAA
                     PVVERLNAIETHRQQERAVQHQKALELERSQWQHHGPSL"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(605..928)
                     /locus_tag="PTC84_RS26330"
                     /old_locus_tag="PTC84_26330"
     CDS             complement(605..928)
                     /locus_tag="PTC84_RS26330"
                     /old_locus_tag="PTC84_26330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_273961875.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGED
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1567..1737
                     /locus_tag="PTC84_RS26335"
                     /old_locus_tag="PTC84_26335"
     CDS             1567..1737
                     /locus_tag="PTC84_RS26335"
                     /old_locus_tag="PTC84_26335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004193911.1"
                     /translation="MHEPPVQSDYHARSGNYQLESNPERHDKSPVAVAIGNWVHGAEIV
                     ENAYRVLEVKA"
                     /name="hypothetical protein"
     gene            complement(1946..2278)
                     /locus_tag="PTC84_RS26340"
                     /old_locus_tag="PTC84_26340"
     CDS             complement(1946..2278)
                     /locus_tag="PTC84_RS26340"
                     /old_locus_tag="PTC84_26340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_016807542.1"
                     /translation="MNTYIFLGGAIVAEVIGTIFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     ARG             complement(1947..2278)
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          complement(1025..1216)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.308"
                     /coverage="89.0"
                     /evalue="3.38e-71"
     Typing          1196..1679
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.756"
                     /coverage="93.0"
                     /evalue="1.73e-132"
     Typing          complement(2..615)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.098"
                     /coverage="100.0"
                     /evalue="4.65e-130"
ORIGIN
        1 caccacctca aaacctgcgc tttccagcgc ctcagtgacg tcctgacgcg ttttcagctc
       61 cccggatgag gcaagggcaa gcaggccgct cgtaatcgcc tgggcggctt cctgcttcgc
      121 ttccggcagc gcggaaggcg agaccagcac ccgccggttc tccggcgcgt tcgggtcatg
      181 cagccccagc ctgccgttca ctatggtctg ccaggcatcg atgcgcggac ggtcggcgcg
      241 gtcgtaatac ggctgtagcc gcttgccggt cagaagctcc gtgttcggga tcaggaagtt
      301 cagctccagc cgccccttgt cccggtgctc aacccacagc acgctgtact ggtctttatc
      361 gagtccgggc atcagaaccc gctcaaaact cgccatcagc ttttcgcgct gcccgggcgg
      421 taaatcctgt tcggcaaagg acaggacgcc ggaggtgtac tttttggcgt agggcgaggc
      481 gtcgataagt tcccggactt cctccggctt cccctgcaga acgctggcgc cgtcgcgctg
      541 ccggtctttc cccagcaggt aatccaccgg accggcgccg cccccgcgcc cccggggatg
      601 aaacttaacg atcatcgtct tccccctttt ccagcaccgc gtgccgcagc cgctcgagtc
      661 cggcatcaat ggccatcagc gcggcgacaa tctgcacgcg gtcgtgtccg cttccaccac
      721 cggcgttaac ctggcgggca atctggttaa ggttgttccc catgccggca agctgacgaa
      781 gcagcgccgg cgagatcgac ggaagtttgc cggcgcgtgc gggcttctcg tccaggcacg
      841 tctgccgcat ccaggccgcg agttgcttac cctcgcagcg ctccagcaga cgccggtgct
      901 cgtcctcagt cacccacatg gtgagcattt tgctgcgttt gtctgccaat ccggcctcct
      961 gataacgccg ggacggacgg gaaatctttt cccggtcggc acggtgttgg acaagccgca
     1021 ggcgcggcag tggttttagc gggtttcggg gcgcagccct gaaccagtca cgtagcgcta
     1081 gcggagtgta tactggctaa acatgttatg acggagtggc aatttatgaa agtgcttcat
     1141 gtgacagggg aaaaatgcgg ctgccgggcg taagtgcaaa atgcaggtgg tgatgaaatg
     1201 acgcctcctc gctcactcgg tcgctacgct cctgccgtga gactgcggcg ggcgttacca
     1261 gctcacagat tacgggataa gcaaatgccg ctcgaagcag gaaaggccaa gaaaaggatg
     1321 cggagttgcc gtttttccat aggctccgcc cccctgacga gtatcacgaa aatgacgctc
     1381 aaatcagcgg tggcgaaacc cgatgcggct taaagatacc aggcgtttcc ccctggtggc
     1441 tccctcgtgc tcccccgcat tcctgccttt cggtttaccg gtgtcattcc gctgttatgg
     1501 ccgcggtttc tcattccacg cctgaaactc ggttccgggt aggcagttcg ctccaggatg
     1561 gactgtatgc acgaaccccc cgttcagtcc gactaccacg cccgttccgg taactatcaa
     1621 cttgagtcca acccggaaag acacgacaaa tcgccagtgg cggtagccat tggtaactgg
     1681 gttcacggag cagagattgt agagaatgcc tacagagttc ttgaagtgaa agcctgagtg
     1741 cggctacact gaaaggacag tttaggtatc tgcgctccgt gaaagccagt taccatcgga
     1801 acaaagagtt ggtagctctg aattccggca aacgaaccac cgttggtagc ggtggttttt
     1861 ttgtttacag ggaaaaagat tacgcgcaga aagaaaggat ctcaaggaaa tccttttgct
     1921 ttggccaata tgcttcggta aaaagttaat gcgcagaaga ttttgaaaaa atattaataa
     1981 ccaaaactcc aacgcaaata aggaacattc ctgcaattgc gggccaatca agtttttgac
     2041 cgctaaccaa ccaaccagct aggcttatta gtacaattcc cgcaccagac caaattgcgt
     2101 aagcaatacc ggtaggtata ttttccaatg tttgggaaag cagataaaag gcagcgcaat
     2161 aacttattgc agttcctaca gacggccaca ggcgtgtaaa tccttctgaa tatttcataa
     2221 agatggtgcc tatgacttca gccacaatag cccctcccag gaaaatatat gtattcataa
     2281 aaatacctca tgttgaaaaa tttaaatatc tttacataac aactaattaa tagaacccgg
     2341 cttatcatag cgaaggacca tgatgctgcc actgcgatcg ttccagctcc agcgctttct
     2401 ggtgctgcac cgcccgctcc tgctgccggt gagtttctat cgcgttcagc ctttcgacaa
     2461 ccggcgcagc tgctcgctca aactctgcac ctgcctgctc aagaccgtga cgcgctcgtt
     2521 cagcgccgcg ttctcccgtt gaataagacc agacatcgtc cgccattccg cgaaggcgtt
     2581 ctcccactcg tccagccttt tcgagtagtc ctgctgtagc tgctctaatg cgctcagcaa
     2641 ctgtttttcc agctccgtca tgtgctattt ccccgccagt atcatccagc tcgagtcctc
     2701 tccgaactgt cccgcttccg ggttcaccct cacgcagcgg cgtctctgct cgccgcaggt
     2761 cgagagctgt acgccgctgt tcctctctga cagcatggcc tgcgtgctct tctgctcccg
     2821 gatggtcgta tagttctcga gtatctgctg cccctgccac cacagaatgc ccgcgctcga
     2881 cgctatcagc agcgcggaga ccagaacgat ggtcagccac gtctggctga ccatgcgcag
     2941 catccctttc gtgcgctggc tcatggctga ggacagcttc cggtcgtggt cgaggatggc
     3001 ggcgctgatt ctcttctcgc tttcgctcag ttccgctctg acagacttct cgtgctcgct
     3061 gaatgcggct ttcagcatct cgccggtagt ctgctgctgc gctttcgatt tctgctctaa
     3121 gtccttcgcc agcgttaaaa gactgttcat agatggctcc cttcagtcgg atgtttcgcc
     3181 ccccgtccgg gtcggcaatg ctgatgctgc tttttgtggt gcg
//
