LOCUS       NZ_CP117700             2620 bp    DNA     circular CON 25-MAR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar London strain L1 plasmid
            unnamed2, complete sequence.
ACCESSION   NZ_CP117700
VERSION     NZ_CP117700.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33062111
            Assembly: GCF_028623105.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar London
  ORGANISM  Salmonella enterica subsp. enterica serovar London
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2620)
  AUTHORS   Wen,H.
  TITLE     Bacteria can drill holes: Salmonella enterica serovar London
            infection of the leg and heel with colonization of the gut
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2620)
  AUTHORS   Wen,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) Department of Clinical Laboratory, The
            Affiliated Hospital of Chengde Medical University, nanyingzi street
            36, Chengde, Hebei 067000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Fyle v. V2.5; CANU v. V1.7.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 293.0x
            Sequencing Technology             :: PacBio Sequel; Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028623105.1-RS_2024_03_25
            Annotation Date                   :: 03/25/2024 01:44:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,625
            CDSs (total)                      :: 4,513
            Genes (coding)                    :: 4,386
            CDSs (with protein)               :: 4,386
            Genes (RNA)                       :: 112
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 127
            CDSs (without protein)            :: 127
            Pseudo Genes (ambiguous residues) :: 0 of 127
            Pseudo Genes (frameshifted)       :: 51 of 127
            Pseudo Genes (incomplete)         :: 90 of 127
            Pseudo Genes (internal stop)      :: 20 of 127
            Pseudo Genes (multiple problems)  :: 31 of 127
            Pseudo Genes (short protein)      :: 1 of 127
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP117700.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2620
                     /organism="Salmonella enterica subsp. enterica serovar
                     London"
                     /mol_type="genomic DNA"
                     /strain="L1"
                     /serovar="London"
                     /isolation_source="leg"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:149390"
                     /plasmid="unnamed2"
                     /geo_loc_name="China:Chengde"
                     /collection_date="2021-12-12"
     gene            1..498
                     /locus_tag="PRJ38_RS23105"
                     /old_locus_tag="PRJ38_23105"
     CDS             1..498
                     /locus_tag="PRJ38_RS23105"
                     /old_locus_tag="PRJ38_23105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019842774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_050953180.1"
                     /translation="MKKQILALALLSLPLIGMAKDSGYGNTEWGMTPNQVVAAQKGKAH
                     LIPPQKYKDQWGKVSIEDVNIGSGIYTVTFIFDASDKLVQTNVASKEKKNEGIANDQFN
                     LLNQLLTQKYGKPQFVSDEKATWKTDTTTIELNKMIISGIMAQTLVRYIPNKTVISDTS
                     NL"
                     /name="hypothetical protein"
     gene            2024..2611
                     /locus_tag="PRJ38_RS23110"
                     /old_locus_tag="PRJ38_23110"
     CDS             2024..2611
                     /locus_tag="PRJ38_RS23110"
                     /old_locus_tag="PRJ38_23110"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_050953182.1"
                     /translation="MIRKIFFAYAIVVAISGCTAMDKLAGMGVVSQQTSTFDNSTVIEV
                     SPNSLYDPNSTWGTPLQLGAIWSSAYPDEAGLILSYNSNVSSGNAAYLGLTGIDINVDG
                     KISSYKAQQQTNLSSSSYNSVSKTIYTSSKNTIVIPYKLLESMVSAKNCRIRIHTSQGN
                     QDIDFSAQSIPGGKATAIVSIKEFLAKVERFK"
                     /name="hypothetical protein"
     Typing          1407..1914
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.447"
                     /coverage="99.0"
                     /evalue="1.29e-173"
ORIGIN
        1 atgaagaagc agattcttgc actcgctttg ctatcactgc cactgattgg catggcaaag
       61 gactctggtt atggcaatac cgaatggggt atgaccccaa atcaggtcgt tgcagcccag
      121 aaaggaaaag ctcatttaat cccccctcaa aagtataaag accaatgggg aaaagtgagc
      181 attgaagacg tgaatatagg tagtggaata tatacagtta cgtttatttt tgacgcatca
      241 gataaattag tccaaaccaa cgttgccagc aaagaaaaga aaaacgaggg aatagcgaac
      301 gaccaattta acttattaaa tcaattgctt acacaaaagt acggcaaacc acagtttgta
      361 agtgatgaaa aagcaacatg gaaaactgat actacaacaa ttgagctaaa taagatgatc
      421 atctccggaa ttatggctca aacactagtt cgctacattc ctaataagac cgtgatttct
      481 gacacgtcta acctgtaata attgtagcct cactgagtgt ctctctcctg cttctatatc
      541 tgaggtggga gatttaccat aacatctctt gcgtgcaccg ccgcagaggc cctcagcgcg
      601 tttctgccgc gtgcgggccg tttccggcac ctttcccagc accaacccct gaaaaacgcg
      661 cctgatgatt tctgcgcatc tgcatggcta tgcacgaaca tgcctggccg gaattttagc
      721 ggctaaaatc ctgcgaactg ctcaaaaggc tcgctgaacc ccatcgataa cggtgaacgg
      781 gtgcacagtt tactgtgcgg tcgtgaggcg ttgagcaacg agctttgcga ggcggtaggg
      841 gttctgagag ccagctgcag gctcaggaga aaacattctg ttttcggggc agataccgca
      901 aatgacgtca ttttgcggcg tctgccctat cctgcatcgc aacgtctaaa ggatgtgagc
      961 acaaacgcca gcactttgcg aatcctgccc tagatctcaa cagcagagaa atttcgtacg
     1021 cacgaaactc agcgtatcgg gcggcgcctg atgaaacatt ctggagtgtc ggcggtactc
     1081 caaaaacaca tcttgtcccg ctgatgttgt cactggcgca aagcggcggt aatgacaaga
     1141 catttcctgt ccgcatcaat acgtgcagaa aacgtaagtg gtgaaagatg atagtacgga
     1201 gcgacaggag cctaagcagc caccggagaa attacgcttc ctcggtcatt cgctcactgc
     1261 gttcggtcat gactctgcgg cgagcgttac gggatcaatc aaagggcgtg gaggtatgaa
     1321 gtgtgagaag agacttaagg gctgccggtt ttccataggc tccgcccccc tgacaagcat
     1381 cacgaaatct gacgctcaaa tcagcggtgg cgaaacccga caggactata aagatcccag
     1441 gcgtttcccc ctggtagctc cctcgtgcgc tctcctgttc ctgcctttcg gtttaccggt
     1501 gtcattccgc tgttatggcc gcgtttatct cattccacgc ctgacactca gttccgggta
     1561 ggcagttcgc tccaagctgg actgtatgca cgaacccccc gttcagtccg actgctgcgc
     1621 cttatccggt aactatcgtc ttgagtccaa cccggaaaga cacgacaaaa cgccactggc
     1681 agcagccact ggtaacaggt ttgtgcgaga gatgtgttca gagttcttga agtggcggcc
     1741 tgactgaggc tacactggaa ggacagattt ggtgacatgt ctcgcacaag actgttacca
     1801 cggttagaga atctgccagg attaactaac cttcgaaaaa ccacctgcca gggtggtttt
     1861 ttcgtttcgt ggtcaagaga ttacgactct cgcttaagga tctcaagaag atctgcccgc
     1921 atcctttcaa aatcctttta aaaaagaata tcgtgtgcaa aatggtttcg ggaatacgat
     1981 gttttttcag tctctgttaa aaagaaaaaa ataggataac gaaatgataa ggaagatttt
     2041 ttttgcttat gcgatcgtag tagcgatctc tggctgtaca gcaatggata aattggcggg
     2101 aatgggtgtt gtttctcagc aaacatcaac ctttgataac tcgactgtca tagaggtatc
     2161 tccaaattcg ctatacgatc ctaacagcac ttggggaaca ccacttcagt tgggcgcgat
     2221 atggtctagt gcctatccag atgaggctgg actaatcctt tcctacaact cgaatgtatc
     2281 tagcggaaat gccgcatact taggtttgac ggggattgat ataaatgttg atggtaaaat
     2341 atccagctat aaagcacagc aacaaactaa tctaagcagc agctcatata actccgtatc
     2401 caagacgatc tatacctcta gcaagaatac tatcgttatc ccatataaat tgctggagag
     2461 catggtatca gctaaaaact gccgcattcg catacacaca agccaaggaa atcaagacat
     2521 cgacttctca gcacaaagta tccccggagg taaagcgaca gcgatcgttt ccattaaaga
     2581 gttcctggcc aaagtcgaac gttttaaata aggaggcgtc
//
