LOCUS       NZ_CP117695             1888 bp    DNA     circular CON 25-MAR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar London strain S1 plasmid
            unnamed2, complete sequence.
ACCESSION   NZ_CP117695
VERSION     NZ_CP117695.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33062119
            Assembly: GCF_028623145.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar London
  ORGANISM  Salmonella enterica subsp. enterica serovar London
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1888)
  AUTHORS   Wen,H.
  TITLE     Bacteria can drill holes: Salmonella enterica serovar London
            infection of the leg and heel with colonization of the gut
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1888)
  AUTHORS   Wen,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) Department of Clinical Laboratory, The
            Affiliated Hospital of Chengde Medical University, nanyingzi street
            36, Chengde, Hebei 067000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Fyle v. V2.5; CANU v. V1.7.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 335.0x
            Sequencing Technology             :: PacBio Sequel; Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028623145.1-RS_2024_03_25
            Annotation Date                   :: 03/25/2024 01:24:06
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,635
            CDSs (total)                      :: 4,521
            Genes (coding)                    :: 4,392
            CDSs (with protein)               :: 4,392
            Genes (RNA)                       :: 114
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 129
            CDSs (without protein)            :: 129
            Pseudo Genes (ambiguous residues) :: 0 of 129
            Pseudo Genes (frameshifted)       :: 51 of 129
            Pseudo Genes (incomplete)         :: 92 of 129
            Pseudo Genes (internal stop)      :: 20 of 129
            Pseudo Genes (multiple problems)  :: 31 of 129
            Pseudo Genes (short protein)      :: 1 of 129
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP117695.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1888
                     /organism="Salmonella enterica subsp. enterica serovar
                     London"
                     /mol_type="genomic DNA"
                     /strain="S1"
                     /serovar="London"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:149390"
                     /plasmid="unnamed2"
                     /geo_loc_name="China:Chengde"
                     /collection_date="2021-12-12"
     gene            1..237
                     /locus_tag="PTQ18_RS23160"
                     /old_locus_tag="PTQ18_23160"
     CDS             1..237
                     /locus_tag="PTQ18_RS23160"
                     /old_locus_tag="PTQ18_23160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001676031.1"
                     /translation="MNRLTNLTPAEKKFLDDAIAAAERASGKKLNQPNRHIVLNRARAQ
                     IESQRYADRQRALREDERQQSEFAWSRPRAPRR"
                     /name="hypothetical protein"
     gene            complement(1079..1192)
                     /locus_tag="PTQ18_RS23205"
     CDS             complement(1079..1192)
                     /locus_tag="PTQ18_RS23205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001517211.1"
                     /translation="MHEPPVQSDCCACSGNYRLESNPERHAKAPLAAATGN"
                     /name="hypothetical protein"
     Typing          complement(1084..1567)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.277"
                     /coverage="80.0"
                     /evalue="0.0"
ORIGIN
        1 atgaacagac tgacaaacct gacacctgca gagaaaaaat ttcttgatga tgctattgcc
       61 gcagctgaga gagcgtcagg caaaaagcta aatcagccga accggcatat cgtcctgaac
      121 agagcgcgtg cgcagattga gtcgcagcgt tacgccgacc gccagcgtgc attacgtgag
      181 gatgagcggc agcagtccga gtttgcctgg tcacgtccgc gcgcgccgcg ccgctgattg
      241 cgccttttgg cggtttagtg gtgctgacac tccgaaatcg tctgccattc acccgcgtgc
      301 atagccatgc agtcgcgcag aaatcatcag gtgcgttttt cagggttatg gccagggaaa
      361 ggtgctggaa atggctaact cgttacagag tggcgctgag ggcctctcag gcggtgcggg
      421 caacggatgt tatggtaaat agagcgtttt ggtgactcgc ccgccacatc tttagctgtg
      481 atataatttt acagaaggat gaaagggcaa aaaaaaagaa tccgtaagga ttctttttct
      541 cgcctcagtc agcgactgcg aatcgctgac tgctacccga aaacatgtac cgaagctcac
      601 gttgtcgtta cttatcacaa agtaatttta cccctggggt gaatctacgt caattgagcc
      661 ggtattcctt tctatcaata tgaaggaata aacgtatggc cgaactgctt acggcgttta
      721 ttaaagcacc acttataagc caggtgctga ccatcattct gtgtctgatc tttgtagtac
      781 acagtctttt aaattgatgt accacccata aaaaaagcca cttatgtggc tttttttatg
      841 aatcgagaga taggtatctg ttgaatatca cagatgatct tcttgagatc cttttcgttg
      901 cgtcgtaatc tcttgctctg gaaacgaaaa aaaccgccca gcaaggcggt ttttcgaagg
      961 ttctcagagc agcaactctt tgaaccgcgg taactggctt aagaggagcg cagtaaccaa
     1021 atctgtcctt tcagtttagc cttaactggc acataacttc aagactaact cctctaaatc
     1081 agttaccagt ggctgctgcc agtggcgctt ttgcatgtct ttccgggttg gactcaagtc
     1141 gatagttacc ggaacaggcg cagcagtcgg actgaacggg gggttcgtgc atacagtcca
     1201 gcttggagcg aactgccttc ccggaactga gtgtcaggcg tggaatgaga gaccgcggcc
     1261 ataacagcgg aatgacaccg gtaaaccgaa aggcaggaac aggagagcgc acgagggagc
     1321 caccaggggg aaacgcctgg tatctttaag tcctgtcggg tttcgccacc actgatttga
     1381 gcgtcagatt tcgtgatgct tgtcaggggg gcggagccta tggaaaaacg gctttgccgc
     1441 ggccttatgg tttccctgtt aagtttcttc ctggcatcca ctaggaaatt tccgccccat
     1501 tagtaagcct gcaccgctcg ccgcagccga acgaccgagc ggagcgagtc agtgagcgag
     1561 gaagcggcat ttctccggca gtgcatcttc tgctgacgca tacgaatctc atttttcacc
     1621 tgctttatgt ggcagctatg cctgatgttt ctgcgatgtt acattttaag ccagtataca
     1681 ctccgctagc gctatgtgac tggttcaggg ctgcgccccg aaacccgcta aaaccactga
     1741 cgcgcctgcg gcttgcccaa cgtctcacgt caccggatta aaatccgctc ccgttcaccg
     1801 tttctggctg tctttcagca ccgccagcgc ttcatcggtt ctgctgtgtc tggcagactg
     1861 tgcggagtta ttctgacggg agaatgct
//
