LOCUS       NZ_CP117667             1589 bp    DNA     circular CON 25-MAR-2024
DEFINITION  Escherichia albertii strain BIA_13 plasmid pEA13_8, complete
            sequence.
ACCESSION   NZ_CP117667
VERSION     NZ_CP117667.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33094093
            Assembly: GCF_028622395.1
KEYWORDS    RefSeq.
SOURCE      Escherichia albertii
  ORGANISM  Escherichia albertii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1589)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Escherichia albertii as a potential enteropathogen in the light of
            epidemiological and genomic studies
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1589)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2023) Department of Microbiology, Medical
            University of Bialystok, 2C Mickiewicza Street, Bialystok, Podlasie
            15-222, Poland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. v1.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 287x
            Sequencing Technology :: Illumina Miseq/Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028622395.1-RS_2024_03_25
            Annotation Date                   :: 03/25/2024 01:44:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,085
            CDSs (total)                      :: 4,959
            Genes (coding)                    :: 4,714
            CDSs (with protein)               :: 4,714
            Genes (RNA)                       :: 126
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 96
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 100 of 245
            Pseudo Genes (incomplete)         :: 174 of 245
            Pseudo Genes (internal stop)      :: 45 of 245
            Pseudo Genes (multiple problems)  :: 62 of 245
            Pseudo Genes (short protein)      :: 3 of 245
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP117667.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1589
                     /organism="Escherichia albertii"
                     /mol_type="genomic DNA"
                     /strain="BIA_13"
                     /host="Grus grus"
                     /db_xref="taxon:208962"
                     /plasmid="pEA13_8"
                     /geo_loc_name="Poland: North-East"
                     /collection_date="2015"
     gene            718..1155
                     /locus_tag="PS034_RS25365"
                     /old_locus_tag="PS034_25365"
     CDS             718..1155
                     /locus_tag="PS034_RS25365"
                     /old_locus_tag="PS034_25365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001194694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001557684.1"
                     /translation="MNTQNLIAEHREKHDRDNLGFTQVYPLGWKRLMALAKGNQGAFGL
                     YTFLAQHIDGACGAVVADQAFLADQFDVTTRTVRNWISYLEEQKAIVKIPVAGRVCAYA
                     LNPHEVWKGYDNNKPTAAFLTKTLVSKDGEIKRRIMAMFSN"
                     /name="hypothetical protein"
     Typing          243..323
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="89.024"
                     /coverage="86.0"
                     /evalue="2.09e-19"
ORIGIN
        1 cttccatgcc ctaatggcat ttaaaacccg tttagtgcgt ctgagagctt ctgagagcgt
       61 ttgaggggct atttggcgac tcattcccga aagaacaaca gcggaatcac cgacgacatg
      121 cgagaggtga caccgctcgc cgcagcccca gcgaccgaac gtagtgagcg agtgggcgag
      181 gaagcggaag agaaccgaaa gtcacattga gcacgtacgc acagatgcta ggtgtcgggg
      241 tgaagccctg accagatagg caattgtgat agtgtcgcgg gtgacggtat tacatttgca
      301 catcctgtcc cgatttttga ggcgttttag cggtgaacgg atggcaaaac catgaacgtt
      361 gagagcgtga aatctggcaa aaatcacggc tagtaaggct tgcagaggag taagccagta
      421 tacactccgc tagcgctacg tgactggttc agggctgcgc cccgaaaccc caaaaaaacc
      481 aaaaccaaac gatcgtgcat taggaaacat agtgctctta agataacaat tagcagaaga
      541 tgtaagttat tgtttttatt tgtagaaata cagcgtgata ggaaacacat gtgtttccgc
      601 atgataggaa acacatgtgt ttcctatcat ttctgaaagt aggaacgaaa caagtgttga
      661 tatggaaaat aaatttccta tcataggaat accaatttcc ggttgatagg aatcgctatg
      721 aatacccaga atctaatcgc agaacatcga gaaaaacatg acagagataa cctcggattc
      781 actcaagtgt atccactagg atggaagcgg ctgatggctc ttgccaaagg aaatcagggc
      841 gcatttggct tgtatacttt tttggcacag catatcgatg gtgcgtgtgg tgctgttgta
      901 gcggatcagg cttttctggc tgatcagttt gatgtgacca ctcgaactgt acgcaattgg
      961 atctcgtacc tagaagagca gaaagccata gttaaaattc ccgttgcggg aagagtttgc
     1021 gcctatgctc ttaacccaca cgaggtatgg aaaggctatg acaataacaa gccaacagct
     1081 gcattcttaa caaagacctt agtcagcaaa gatggggaaa ttaagcgccg gattatggcc
     1141 atgttttcaa attgagccag cggcaggcgg acaatcaggg ctacgtgtta acgttttgac
     1201 catgattgtc tatcctgcat tgctcttttc tcgacctcaa attcccttgc atattgaata
     1261 ggaattgcac tacaagatta tttgagcgcg tttcttcaca gtcccttgac ccacattgcc
     1321 cgtggtcctc gaaacgcgct catcctccgt cttgttccct gccacggttc cggcagcgcc
     1381 ttgagcgcaa ccggaaaccg tctggggaga accccagacc cccatcgctg taacaccgac
     1441 gccctaacca cctaccaacc aagtggctgt ccgttccgtg caaatgggct ttgcaggagg
     1501 ctggcgcggt tcctggcgac ctgaaaaccc ctaactaggg gtttcggcgc gcctgacctc
     1561 ctgaaaccct ctgtaagcgt ttttcgcgc
//
