LOCUS       NZ_CP117666             2761 bp    DNA     circular CON 25-MAR-2024
DEFINITION  Escherichia albertii strain BIA_13 plasmid pEA13_7, complete
            sequence.
ACCESSION   NZ_CP117666
VERSION     NZ_CP117666.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33094093
            Assembly: GCF_028622395.1
KEYWORDS    RefSeq.
SOURCE      Escherichia albertii
  ORGANISM  Escherichia albertii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2761)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Escherichia albertii as a potential enteropathogen in the light of
            epidemiological and genomic studies
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2761)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2023) Department of Microbiology, Medical
            University of Bialystok, 2C Mickiewicza Street, Bialystok, Podlasie
            15-222, Poland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. v1.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 287x
            Sequencing Technology :: Illumina Miseq/Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028622395.1-RS_2024_03_25
            Annotation Date                   :: 03/25/2024 01:44:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,085
            CDSs (total)                      :: 4,959
            Genes (coding)                    :: 4,714
            CDSs (with protein)               :: 4,714
            Genes (RNA)                       :: 126
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 96
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 100 of 245
            Pseudo Genes (incomplete)         :: 174 of 245
            Pseudo Genes (internal stop)      :: 45 of 245
            Pseudo Genes (multiple problems)  :: 62 of 245
            Pseudo Genes (short protein)      :: 3 of 245
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP117666.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2761
                     /organism="Escherichia albertii"
                     /mol_type="genomic DNA"
                     /strain="BIA_13"
                     /host="Grus grus"
                     /db_xref="taxon:208962"
                     /plasmid="pEA13_7"
                     /geo_loc_name="Poland: North-East"
                     /collection_date="2015"
     gene            complement(235..1242)
                     /locus_tag="PS034_RS25350"
                     /old_locus_tag="PS034_25350"
     CDS             complement(235..1242)
                     /locus_tag="PS034_RS25350"
                     /old_locus_tag="PS034_25350"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_273784141.1"
                     /translation="MLLPPLNTPFCDWITVTYRSERPDLSYIARLFFEGLHASVHPLGG
                     VDSGWSAIGNRRMALTGAGSELTGIPITQFVILARFADKSYHLVFQISGLGLQLLRSEP
                     ELFRELMRELGSCPHRVTRLDVGMDLPVDGADYLADFKSRFPSGYVQFTRKRAALSWVL
                     SVRDDGRDTGTVYAAKGTRSRVKMRIYDKAYEVLQRRKLTIPPRTRVEFALETEFGASL
                     YDVLRPESLFWHLASPDILGKKPADVPAWFKRESFTPAPRERRYKSDKPPLHVMKSYVD
                     DTQLLDGLIEYVDRNIGSDGRMLLKNHIGRYIDQYDESRKILLSDKASTTDNAS"
                     /name="hypothetical protein"
     gene            complement(1462..1692)
                     /locus_tag="PS034_RS25355"
                     /old_locus_tag="PS034_25355"
     CDS             complement(1462..1692)
                     /locus_tag="PS034_RS25355"
                     /old_locus_tag="PS034_25355"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_273784140.1"
                     /translation="MTIHDRFIPEDVYQSFCQLRDSVDGFSAVARLIPDGESDVFDFAS
                     LGHLLRMVSDSLHGCLDVHWRSIADAEFVKR"
                     /name="hypothetical protein"
     gene            2257..2727
                     /locus_tag="PS034_RS25360"
                     /old_locus_tag="PS034_25360"
     CDS             2257..2727
                     /locus_tag="PS034_RS25360"
                     /old_locus_tag="PS034_25360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001556731.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_273784142.1"
                     /translation="MSSVVSSGETGQSQESKDNFNFVQLSRSYLKQLRNLARKSPVAHE
                     ILYYLVEHMGKTTNAVICSYATLCEITGVSRPTVGRAIKLLKDDNWIDTVKVGNANAYC
                     VNEKVFWQAGRNQRKYAIFSATVIASESEQDEGFQEKAKQKLNYIPIVESKH"
                     /name="replication/maintenance protein RepL"
ORIGIN
        1 cacgccaccc ccgccccacg cgacagcgtg tgacgtgtat gtcgcggccg ggcgaggatg
       61 aatatagcct gagccttccc cgtgtatttt ttgtatggaa cagttcatat attaaaaaga
      121 tattatctgc gttttagaaa gcagggttaa taagcaacgc aaaaagaaaa tatataaaca
      181 gaagttattt cccgcgtggc gaatgtaatt aatacagagc acgcaggaaa taaattaact
      241 tgcgttatca gtggttgatg ctttatcaga aagtaatatt ttccgactct catcatactg
      301 gtcgatataa cggccaatat gatttttcag caacattcga ccgtcagaac cgatatttcg
      361 atcaacgtac tctatcagtc catcaagcag ctgcgtgtcg tcaacatacg atttcataac
      421 gtgaagtggg ggtttgtcgc tcttatatcg acgttcgcgg ggtgcgggtg taaaggattc
      481 gcgtttaaac caggccggaa catcagccgg tttcttgccc agaatgtcag gcgatgcaag
      541 atgccagaac aaagactcag ggcgaagaac atcatagagt gacgcgccaa actcagtctc
      601 gagcgcgaac tcaactcgcg tacgcggcgg aatggtaagt tttcgccgct gtaacacctc
      661 gtaagccttg tcatagatac gcatttttac acgagagcgc gtacctttag ccgcgtatac
      721 cgtacccgta tcacgaccat catcacggac cgacaaaacc cagctaaggg cggctctctt
      781 acgcgtaaac tgaacataac cagaagggaa acgacttttg aaatcagcaa gataatcagc
      841 cccgtccacg ggcaaatcca tgccaacgtc gagacgcgta acacggtgag gacaagaacc
      901 caactcacgc attaattccc ggaacagttc aggctctgag cgtagcaact gaagaccaag
      961 cccggagatc tgaaaaacga ggtgataact cttgtcagcg aaccgcgcga ggataacgaa
     1021 ctgagtgatc ggaatacctg taagttcaga acccgcacct gtaagagcca tgcggcgatt
     1081 gcctatagca gaccaaccag aatcaacacc accaagcgga tggaccgagg catgtaaacc
     1141 ttcaaagaac aaacgggcga tgtacgacag gtcaggacgc tcagaacgat acgtgacagt
     1201 gatccagtca cagaaaggag tgttgagagg aggtagcagc ataagcagag caccaaagcg
     1261 actgtgaatt gttttttcca aatttctatg gggggtgtta ctaaaacccc cccccgacag
     1321 agcaacattc aggtacagaa aaacccgctt agcagggcga tggcccactg cgtgaaccat
     1381 caccctcatc aagggtatct ttcctgagtg tcgtcaatca ctaaatcgga acccactggc
     1441 aggccagcgg ggccccacga tttagcgttt gacgaattca gcatcggcga tagaacgcca
     1501 gtgaacatca agacagccat gaagagagtc ggaaaccatc cgcagcaaat gaccaagaga
     1561 ggcaaaatca aagacatccg actcaccatc agggattaga cgggcgacgg cggaaaaacc
     1621 atcaacagaa tcacggagct ggcaaaaaga ttgataaaca tcctcaggaa tgaaacgatc
     1681 gtgaatagtc atatgaacct ctgtgttcaa gtcgtaaggt ttatgtgatt agaaaagccc
     1741 tgtagagcca gctacggggc ttttcgctat tagatcaccc aaacccacac ctttcaacgt
     1801 tttgctcgtc agagagcgtt ttagacccct tattttcgat ttttttacta cgttgttgtc
     1861 gtcagtcgtc acggcaggcg ctcccgtcct cgtccctgcg ggcgggtgcg gctggcgttc
     1921 ctccctcctc caaccactca ggacaaaaac cgataaccgg agatcaaaac gaccgagaga
     1981 ggagaaaccg ctcgccgcag acccagcgac cgaacgtagt gagcgagtgg tcgaggaagc
     2041 ggaaaggaga tggtgctaat ttgagcactt acgcaatgct attacagata tagaataggg
     2101 aaaatattaa gttattgttt tttaacaaca actaaggggg ggtagtctca tcagctatga
     2161 gactgggtag tctcatcagc tatgagactc tgagttgcaa cccaaatcat ttgatgatac
     2221 aacctaaatc aaacagtttc atgaggagag gtttttatga gttcggttgt atcaagtggt
     2281 gagactggcc agtctcaaga gagcaaagac aattttaact tcgtgcaact ctctaggagt
     2341 tacttaaaac aactaagaaa cttagcgagg aaaagccctg ttgcgcatga aattctctac
     2401 tacttagtgg agcacatggg caaaacaaca aacgcagtga tctgtagtta tgcaactctc
     2461 tgtgaaatta caggtgttag ccgcccaact gtagggaggg ctataaaatt acttaaagat
     2521 gacaattgga tagatacagt caaagtcggt aacgcgaacg catattgcgt gaatgaaaaa
     2581 gttttctggc aagcgggaag gaatcaaagg aaatatgcaa tattttcagc aactgttata
     2641 gcatcggaat cagaacaaga cgaaggcttc caagagaagg cgaaacaaaa gttaaattac
     2701 atacctatag tagaatcaaa acattgacgg gagagcgtgg cgtgaattat tcaggcccgg
     2761 a
//
