LOCUS       NZ_CP117665             2784 bp    DNA     circular CON 25-MAR-2024
DEFINITION  Escherichia albertii strain BIA_13 plasmid pEA13_6, complete
            sequence.
ACCESSION   NZ_CP117665
VERSION     NZ_CP117665.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33094093
            Assembly: GCF_028622395.1
KEYWORDS    RefSeq.
SOURCE      Escherichia albertii
  ORGANISM  Escherichia albertii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2784)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Escherichia albertii as a potential enteropathogen in the light of
            epidemiological and genomic studies
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2784)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2023) Department of Microbiology, Medical
            University of Bialystok, 2C Mickiewicza Street, Bialystok, Podlasie
            15-222, Poland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. v1.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 287x
            Sequencing Technology :: Illumina Miseq/Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028622395.1-RS_2024_03_25
            Annotation Date                   :: 03/25/2024 01:44:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,085
            CDSs (total)                      :: 4,959
            Genes (coding)                    :: 4,714
            CDSs (with protein)               :: 4,714
            Genes (RNA)                       :: 126
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 96
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 245
            CDSs (without protein)            :: 245
            Pseudo Genes (ambiguous residues) :: 0 of 245
            Pseudo Genes (frameshifted)       :: 100 of 245
            Pseudo Genes (incomplete)         :: 174 of 245
            Pseudo Genes (internal stop)      :: 45 of 245
            Pseudo Genes (multiple problems)  :: 62 of 245
            Pseudo Genes (short protein)      :: 3 of 245
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP117665.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2784
                     /organism="Escherichia albertii"
                     /mol_type="genomic DNA"
                     /strain="BIA_13"
                     /host="Grus grus"
                     /db_xref="taxon:208962"
                     /plasmid="pEA13_6"
                     /geo_loc_name="Poland: North-East"
                     /collection_date="2015"
     gene            1..477
                     /locus_tag="PS034_RS25335"
                     /old_locus_tag="PS034_25335"
     CDS             1..477
                     /locus_tag="PS034_RS25335"
                     /old_locus_tag="PS034_25335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000469298.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_000469299.1"
                     /translation="MFIDSEKRLKQLSDEAKKSTEDLEEAKKNSRFTQVSPKGWERVRE
                     LLKDSQGISALKLYSFLAEHIDPTCGAVVADQQFLAEKLGVSRSTIIRWLNYLESKNAL
                     VRIPVAGKVCAYALDPHEVWKGYNTTKNHAAFVTKTLVNKDGDIQRRIMAMFSN"
                     /name="helix-turn-helix domain-containing protein"
     gene            646..1230
                     /locus_tag="PS034_RS25340"
                     /old_locus_tag="PS034_25340"
     CDS             646..1230
                     /locus_tag="PS034_RS25340"
                     /old_locus_tag="PS034_25340"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015059030.1"
                     /translation="MSKKNNVPMIQNNGNLQPFSMGNLPSIAKTFPMEIHTTILQQLNP
                     LEHISNAISRICYYKEQCKALELESLKIKEQASLMHLKIDTNFKKAMYELETRRKSNEL
                     KLIAAANDFKQISITKSDLIKEISKLVSSICSNDVSLESKKAMNDTLIIMKGMLSDQRS
                     ESYEKFKSLLSSIDSSYNDALLIEDHQDNYV"
                     /name="hypothetical protein"
     gene            1223..1804
                     /locus_tag="PS034_RS25345"
                     /old_locus_tag="PS034_25345"
     CDS             1223..1804
                     /locus_tag="PS034_RS25345"
                     /old_locus_tag="PS034_25345"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000481844.1"
                     /translation="MFNIILGVAAVGVGLYILNELDDRAGEEKKRWENQRESVCKSIEE
                     HKRYIEQHVEYVQSMYDFHQLVDLHYSCMKVANEAYKLLNDAKKSMGAIYDAINKLKAH
                     RSKLFNDKKESDDYEKKKEIQAEINMIKEIIDGLYSELDLIKKDKEHFYQELKAFNLKT
                     SSIKYRIRDNTGYKGFDWYNRLQERTLLRR"
                     /name="hypothetical protein"
     Typing          2298..2388
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.398"
                     /coverage="99.0"
                     /evalue="3.45e-27"
     Typing          complement(2599..2707)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="1.95e-50"
     Typing          complement(1936..2186)
                     /name="Col(MG828)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.973"
                     /coverage="100.0"
                     /evalue="2.45e-83"
ORIGIN
        1 atgtttattg attcagaaaa acggctgaaa caactttcag atgaggcaaa gaaaagcacc
       61 gaggatctcg aagaagcaaa gaagaattca aggtttacac aggtatcccc aaaaggttgg
      121 gaacgcgttc gagagctgct gaaggatagc caaggcatat cagcactgaa gctgtactca
      181 tttttagcgg agcatatcga tcctacgtgt ggcgctgtcg ttgcggatca gcaattccta
      241 gctgaaaaac ttggagttag cagaagcaca attattcggt ggctcaatta cttagaatca
      301 aaaaatgcat tagttagaat ccccgttgct ggtaaggttt gtgcgtatgc cctcgatcca
      361 catgaagtct ggaagggata caacactacg aaaaaccatg cagcgtttgt cactaaaaca
      421 ctggtcaaca aagacggtga tattcagcgc cgaatcatgg ccatgttttc aaattgagcc
      481 agcggcaggc ggacaatcag gggctacgtg ttaacgtttt gaccatgatt gtctatcctg
      541 cattgctctt ttaccaccta gacagcacca tagcgataag ataaacatgc tcaaacgttt
      601 tatgtaacat tagaaaaatt cagttaatta aaaaaggttt tctaaatgag caaaaaaaat
      661 aacgtgccaa tgatacaaaa taatggaaat ctccaaccat ttagcatggg taatttacca
      721 tctattgcta aaacattccc aatggaaatc catacaacta tacttcaaca gcttaaccca
      781 ttggagcata tatccaatgc tataagtagg atttgttact ataaagaaca gtgtaaagca
      841 cttgagcttg agtcactaaa aataaaagaa caagccagtt tgatgcacct taaaatagat
      901 actaatttta aaaaggcaat gtatgagcta gaaacaagaa gaaagagtaa tgagttgaag
      961 ttgatagctg ctgcaaatga ttttaagcaa atatcaataa caaaatcaga cttaattaaa
     1021 gagatatcaa agcttgtttc aagcatatgt agcaatgacg tttcgttgga aagtaaaaag
     1081 gcgatgaacg atactcttat cattatgaaa ggcatgctca gtgatcaacg gtctgagtca
     1141 tatgaaaaat tcaaatcttt gttaagtagt attgattcta gttacaatga tgcgttgttg
     1201 atagaggatc atcaggataa ttatgtttaa tatcatactc ggagttgctg ctgtaggtgt
     1261 tggcttatat atcttgaacg agcttgatga tcgcgccgga gaagaaaaaa agcgatggga
     1321 aaatcaacga gaatcagtat gtaaaagcat tgaagaacat aagagatata tagaacaaca
     1381 tgtcgaatat gttcaatcaa tgtatgattt tcatcagtta gttgaccttc attattcatg
     1441 tatgaaagtg gcaaatgaag catataaact tcttaatgat gctaaaaaat caatgggcgc
     1501 tatttatgat gctatcaata aactcaaagc tcaccgctct aaattattta atgataaaaa
     1561 agaaagcgat gattatgaaa agaaaaaaga aatacaagca gaaataaaca tgatcaaaga
     1621 aatcatagat ggcctatact ctgaattaga tttaattaaa aaggataaag aacattttta
     1681 tcaggaatta aaagctttta acttaaaaac tagcagcatt aaatacagaa ttagagacaa
     1741 taccggatat aaaggctttg attggtataa tcggttacaa gaacgaactt tacttcgacg
     1801 ttagttttgc actgaaacta tatcagataa caatcctcca cggttccggc agcgccttga
     1861 gcgcaaccgg aaaccgtctg gggagaaccc cagaccccca tcgctgcaac atcgacggtc
     1921 tgcgaccacc tgccaaccga gtaactgcct gttccgtgcg aatgggcttt gcagggggct
     1981 ggcgcggttc ctggcgacct gaaagcccct ggttaggggt atcggcgcgc ctgacctcct
     2041 gagagcctct gtaacgcatt ttcgcgcctc ccatgccctg gcgggcattt aaaacccgtt
     2101 tcgtgcgtct gagagcgttt gaagggctat ctgacgactc atccccgaaa gaacaacgac
     2161 ggaatcaccg acaacatgcg agaggtggca ccgctcgccg cagccccagc gaccgaacgt
     2221 tagtgagcga gtgggcgagg aagcggaaga gaaccggtag ttagattgag cacgtacgca
     2281 ctgatgggtg tcggggcgca gccctgacca gatggcaaac ggaatatcgt cgtgggtgac
     2341 ggtattacat ttgcacatcc tgtcccgatt tctgaggcgt tttagccttc ataccccttt
     2401 tagtggtgaa cggacggcaa aaacatgatg gaactgttga acgtggagag cgcgaaatcg
     2461 gacaaaaatc acggctgacg aggcttgcag aggagtaagc cagtatacac tccgctatcg
     2521 ctacgtgact gggtcagggc tgcgccccga cacctccaaa gggtgttgcg ctcaacgcaa
     2581 cacccttgcc tagaatagat cttttacgcc gatttgtaag ttgttgtttt tttagtgtgt
     2641 tttttgttta cctgttgcat ccagggtgac acaacgttgt cgcatcctgg atgcgacaac
     2701 acgcaacaag gtgttgcaca gatgtatcat gatggcttag atttgaacca acgttagtgc
     2761 atgggatttt cagagggaaa aatc
//
