LOCUS       NZ_CP117646             1590 bp    DNA     circular CON 25-MAR-2024
DEFINITION  Escherichia albertii strain BIA_17 plasmid pEA17_3, complete
            sequence.
ACCESSION   NZ_CP117646
VERSION     NZ_CP117646.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33094097
            Assembly: GCF_028622635.1
KEYWORDS    RefSeq.
SOURCE      Escherichia albertii
  ORGANISM  Escherichia albertii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1590)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Escherichia albertii as a potential enteropathogen in the light of
            epidemiological and genomic studies
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1590)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2023) Department of Microbiology, Medical
            University of Bialystok, 2C Mickiewicza Street, Bialystok, Podlasie
            15-222, Poland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. v1.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 536x
            Sequencing Technology :: Illumina Miseq/Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028622635.1-RS_2024_03_25
            Annotation Date                   :: 03/25/2024 01:44:48
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,106
            CDSs (total)                      :: 4,989
            Genes (coding)                    :: 4,626
            CDSs (with protein)               :: 4,626
            Genes (RNA)                       :: 117
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 363
            CDSs (without protein)            :: 363
            Pseudo Genes (ambiguous residues) :: 0 of 363
            Pseudo Genes (frameshifted)       :: 130 of 363
            Pseudo Genes (incomplete)         :: 242 of 363
            Pseudo Genes (internal stop)      :: 71 of 363
            Pseudo Genes (multiple problems)  :: 72 of 363
            Pseudo Genes (short protein)      :: 3 of 363
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP117646.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1590
                     /organism="Escherichia albertii"
                     /mol_type="genomic DNA"
                     /strain="BIA_17"
                     /host="Grus grus"
                     /db_xref="taxon:208962"
                     /plasmid="pEA17_3"
                     /geo_loc_name="Poland: North-East"
                     /collection_date="2015"
     gene            121..558
                     /locus_tag="PS043_RS25510"
                     /old_locus_tag="PS043_25510"
     CDS             121..558
                     /locus_tag="PS043_RS25510"
                     /old_locus_tag="PS043_25510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001194694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001557684.1"
                     /translation="MNTQNLIAEHREKHDRDNLGFTQVYPLGWKRLMALAKGNQGAFGL
                     YTFLAQHIDGACGAVVADQAFLADQFDVTTRTVRNWISYLEEQKAIVKIPVAGRVCAYA
                     LNPHEVWKGYDNNKPTAAFLTKTLVSKDGEIKRRIMAMFSN"
                     /name="hypothetical protein"
ORIGIN
        1 cgcatgatag gaaacacatg tgtttcctat catttctgaa agtaggaacg aaacaagtgt
       61 tgatatggaa aataaatttc ctaccatagg aataccaatt tccggttgat aggaatcgct
      121 atgaataccc agaatctaat cgcagaacat cgagaaaaac atgacagaga taacctcgga
      181 ttcactcaag tgtatccact aggatggaag cggctgatgg ctcttgccaa aggaaatcag
      241 ggcgcatttg gcttgtatac ttttttggca cagcatatcg atggtgcatg tggtgctgtt
      301 gtagcggatc aggcttttct ggctgatcag tttgatgtga ccactcgaac tgtacgcaat
      361 tggatctcgt acctagaaga gcagaaagcc atagttaaaa ttcccgttgc gggaagagtt
      421 tgcgcctatg ctcttaaccc acacgaggta tggaaaggct atgacaataa caagccaaca
      481 gctgcattct taacaaagac cttagtcagc aaagatgggg aaattaagcg ccggattatg
      541 gccatgtttt caaattgagc cagcggcagg cggacaatca gggctacgtg ttaacgtttt
      601 gaccatgatt gtctatcctg cattgctctt ttctcgacct caaattccct tgcatattga
      661 ataggaattg cactacaaga ttatttgagc gcgtttcttc acagtccctt gacccacatt
      721 gcccgtggtc ctcgaaacgc gctcatcctc cgtcttgttc cctgccacgg ttccggcagc
      781 gccttgagcg caaccggaaa ccgtctgggg agaaccccag acccccatcg ctgtaacacc
      841 gacgccctaa ccacctacca accaagtggc tgtccgttcc gtgcaaatgg gctttgcagg
      901 aggctggcgc ggttcctggc gacctgaaaa cccctaacta ggggtttcgg cgcgcctgac
      961 ctcctgaaac cctctgtaag cgtttttcgc gccttccatg ccctgatggg catttaaaac
     1021 ccgtttcgtg cgtctgagag cttctgagag cgtttgaggg gctatttggc gactcattcc
     1081 cgaaagaaca acagcggaat caccgacgac atgcgagagg tgacaccgct cgccgcagcc
     1141 ccagcgaccg aacgtagtga gcgagtgggc gaggaagcgg aagagaaccg aaagtcacat
     1201 tgagcacgta cgcacagatg ctgggtgtcg gggtgaagcc ctgaccagat aggcaattgt
     1261 gatagtgtcg cgggtgacag tattacattt gcacatcctg tcccgatttt tgaggcgttt
     1321 tagcggtgaa cggatggcaa aaccatgaac gttgagagcg taaaatctgg caaaaatcac
     1381 ggctagtaag gcttgcagag gagtaagcca gtatacactc cgctagcgct acgtgactgg
     1441 ttcagggctg cgccccgaaa ccccaaaaaa accaaaacca aacgatcgtg cattaggaaa
     1501 catagtgctc ttaagataac aattagcaga agatgtaagt tattgttttt atttgtagaa
     1561 atacagcgtg ataggaaaca catgtgtttc
//
