LOCUS       NZ_CP117642             2760 bp    DNA     circular CON 25-MAR-2024
DEFINITION  Escherichia albertii strain BIA_18 plasmid pEA18_5, complete
            sequence.
ACCESSION   NZ_CP117642
VERSION     NZ_CP117642.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33094098
            Assembly: GCF_028622555.1
KEYWORDS    RefSeq.
SOURCE      Escherichia albertii
  ORGANISM  Escherichia albertii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2760)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Escherichia albertii as a potential enteropathogen in the light of
            epidemiological and genomic studies
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2760)
  AUTHORS   Leszczynska,K., Swiecicka,I., Daniluk,T., Lebensztejn,D.,
            Chmielewska,S., Leszczynska,D., Gawor,J. and Kliber,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2023) Department of Microbiology, Medical
            University of Bialystok, 2C Mickiewicza Street, Bialystok, Podlasie
            15-222, Poland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. v1.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 166x
            Sequencing Technology :: Illumina Miseq/Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028622555.1-RS_2024_03_25
            Annotation Date                   :: 03/25/2024 01:51:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,172
            CDSs (total)                      :: 5,045
            Genes (coding)                    :: 4,795
            CDSs (with protein)               :: 4,795
            Genes (RNA)                       :: 127
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 94
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 250
            CDSs (without protein)            :: 250
            Pseudo Genes (ambiguous residues) :: 0 of 250
            Pseudo Genes (frameshifted)       :: 97 of 250
            Pseudo Genes (incomplete)         :: 173 of 250
            Pseudo Genes (internal stop)      :: 41 of 250
            Pseudo Genes (multiple problems)  :: 51 of 250
            Pseudo Genes (short protein)      :: 3 of 250
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP117642.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2760
                     /organism="Escherichia albertii"
                     /mol_type="genomic DNA"
                     /strain="BIA_18"
                     /host="Grus grus"
                     /db_xref="taxon:208962"
                     /plasmid="pEA18_5"
                     /geo_loc_name="Poland: North-East"
                     /collection_date="2015"
     gene            join(2745..2760,1..992)
                     /locus_tag="PS040_RS25825"
                     /old_locus_tag="PS040_25825"
     CDS             join(2745..2760,1..992)
                     /locus_tag="PS040_RS25825"
                     /old_locus_tag="PS040_25825"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_273784141.1"
                     /translation="MLLPPLNTPFCDWITVTYRSERPDLSYIARLFFEGLHASVHPLGG
                     VDSGWSAIGNRRMALTGAGSELTGIPITQFVILARFADKSYHLVFQISGLGLQLLRSEP
                     ELFRELMRELGSCPHRVTRLDVGMDLPVDGADYLADFKSRFPSGYVQFTRKRAALSWVL
                     SVRDDGRDTGTVYAAKGTRSRVKMRIYDKAYEVLQRRKLTIPPRTRVEFALETEFGASL
                     YDVLRPESLFWHLASPDILGKKPADVPAWFKRESFTPAPRERRYKSDKPPLHVMKSYVD
                     DTQLLDGLIEYVDRNIGSDGRMLLKNHIGRYIDQYDESRKILLSDKASTTDNAS"
                     /name="hypothetical protein"
     gene            complement(1261..1731)
                     /locus_tag="PS040_RS25830"
                     /old_locus_tag="PS040_25830"
     CDS             complement(1261..1731)
                     /locus_tag="PS040_RS25830"
                     /old_locus_tag="PS040_25830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001556731.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_273784142.1"
                     /translation="MSSVVSSGETGQSQESKDNFNFVQLSRSYLKQLRNLARKSPVAHE
                     ILYYLVEHMGKTTNAVICSYATLCEITGVSRPTVGRAIKLLKDDNWIDTVKVGNANAYC
                     VNEKVFWQAGRNQRKYAIFSATVIASESEQDEGFQEKAKQKLNYIPIVESKH"
                     /name="replication/maintenance protein RepL"
     gene            2296..2526
                     /locus_tag="PS040_RS25835"
                     /old_locus_tag="PS040_25835"
     CDS             2296..2526
                     /locus_tag="PS040_RS25835"
                     /old_locus_tag="PS040_25835"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_273784140.1"
                     /translation="MTIHDRFIPEDVYQSFCQLRDSVDGFSAVARLIPDGESDVFDFAS
                     LGHLLRMVSDSLHGCLDVHWRSIADAEFVKR"
                     /name="hypothetical protein"
ORIGIN
        1 tcaacactcc tttctgtgac tggatcactg tcacgtatcg ttctgagcgt cctgacctgt
       61 cgtacatcgc ccgtttgttc tttgaaggtt tacatgcctc ggtccatccg cttggtggtg
      121 ttgattctgg ttggtctgct ataggcaatc gccgcatggc tcttacaggt gcgggttctg
      181 aacttacagg tattccgatc actcagttcg ttatcctcgc gcggttcgct gacaagagtt
      241 atcacctcgt ttttcagatc tccgggcttg gtcttcagtt gctacgctca gagcctgaac
      301 tgttccggga attaatgcgt gagttgggtt cttgtcctca ccgtgttacg cgtctcgacg
      361 ttggcatgga tttgcccgtg gacggggctg attatcttgc tgatttcaaa agtcgtttcc
      421 cttctggtta tgttcagttt acgcgtaaga gagccgccct tagctgggtt ttgtcggtcc
      481 gtgatgatgg tcgtgatacg ggtacggtat acgcggctaa aggtacgcgc tctcgtgtaa
      541 aaatgcgtat ctatgacaag gcttacgagg tgttacagcg gcgaaaactt accattccgc
      601 cgcgtacgcg agttgagttc gcgctcgaga ctgagtttgg cgcgtcactc tatgatgttc
      661 ttcgccctga gtctttgttc tggcatcttg catcgcctga cattctgggc aagaaaccgg
      721 ctgatgttcc ggcctggttt aaacgcgaat cctttacacc cgcaccccgc gaacgtcgat
      781 ataagagcga caaaccccca cttcacgtta tgaaatcgta tgttgacgac acgcagctgc
      841 ttgatggact gatagagtac gttgatcgaa atatcggttc tgacggtcga atgttgctga
      901 aaaatcatat tggccgttat atcgaccagt atgatgagag tcggaaaata ttactttctg
      961 ataaagcatc aaccactgat aacgcaagtt aatttatttc ctgcgtgctc tgtattaatt
     1021 acattcgcca cgcgggaaat aacttctgtt tatatatttt ctttttgcgt tgcttattaa
     1081 ccctgctttc taaaacgcag ataatatctt tttaatatat gaactgttcc atacaaaaaa
     1141 tacacgggga aggctcaggc tatattcatc ctcgcccggc cgcgacatac acgtcacacg
     1201 ctgtcgcgtg gggcgggggt ggcgtgtccg ggcctgaata attcacgcca cgctctcccg
     1261 tcaatgtttt gattctacta taggtatgta atttaacttt tgtttcgcct tctcttggaa
     1321 gccttcgtct tgttctgatt ccgatgctat aacagttgct gaaaatattg catatttcct
     1381 ttgattcctt cccgcttgcc agaaaacttt ttcattcacg caatatgcgt tcgcgttacc
     1441 gactttgact gtatctatcc aattgtcatc tttaagtaat tttatagccc tccctacagt
     1501 tgggcggcta acacctgtaa tttcacagag agttgcataa ctacagatca ctgcgtttgt
     1561 tgttttgccc atgtgctcca ctaagtagta gagaatttca tgcgcaacag ggcttttcct
     1621 cgctaagttt cttagttgtt ttaagtaact cctagagagt tgcacgaagt taaaattgtc
     1681 tttgctctct tgagactggc cagtctcacc acttgataca accgaactca taaaaacctc
     1741 tcctcatgaa actgtttgat ttaggttgta tcatcaaatg atttgggttg caactcagag
     1801 tctcatagct gatgagacta cccagtctca tagctgatga gactaccccc ccttagttgt
     1861 tgttaaaaaa caataactta atattttccc tattctatat ctgtaatagc attgcgtaag
     1921 tgctcaaatt agcaccatct cctttccgct tcctcgacca ctcgctcact acgttcggtc
     1981 gctgggtctg cggcgagcgg tttctcctct ctcggtcgtt ttgatctccg gttatcggtt
     2041 tttgtcctga gtggttggag gagggaggaa cgccagccgc acccgcccgc agggacgagg
     2101 acgggagcgc ctgccgtgac gactgacgac aacaacgtag taaaaaaatc gaaaataagg
     2161 ggtctaaaac gctctctgac gagcaaaacg ttgaaaggtg tgggtttggg tgatctaata
     2221 gcgaaaagcc ccgtagctgg ctctacaggg cttttctaat cacataaacc ttacgacttg
     2281 aacacagagg ttcatatgac tattcacgat cgtttcattc ctgaggatgt ttatcaatct
     2341 ttttgccagc tccgtgattc tgttgatggt ttttccgccg tcgcccgtct aatccctgat
     2401 ggtgagtcgg atgtctttga ttttgcctct cttggtcatt tgctgcggat ggtttccgac
     2461 tctcttcatg gctgtcttga tgttcactgg cgttctatcg ccgatgctga attcgtcaaa
     2521 cgctaaatcg tggggccccg ctggcctgcc agtgggttcc gatttagtga ttgacgacac
     2581 tcaggaaaga tacccttgat gagggtgatg gttcacgcag tgggccatcg ccctgctaag
     2641 cgggtttttc tgtacctgaa tgttgctctg tcgggggggg ttttagtaac accccccata
     2701 gaaatttgga aaaaacaatt cacagtcgct ttggtgctct gcttatgctg ctacctcctc
//
